def make_cyjs_network(results, model, stmts):
path_stmts = get_path_stmts(results, model, stmts)
path_genes = get_path_genes(path_stmts)
path_uuids = [list(path.keys()) for path in path_stmts]
all_path_uuids = []
for p in path_uuids:
all_path_uuids += p
print(json.dumps(path_uuids, indent=1))
#filtered_stmts = ac.filter_gene_list(stmts, path_genes, 'one')
filtered_stmts = ac.filter_uuid_list(stmts, all_path_uuids)
ca = CyJSAssembler(filtered_stmts)
cm = ca.make_model()
ca.set_CCLE_context(['SKMEL28_SKIN'])
ca.save_json('output/korkut_model')
def make_cyjs_network(results, model, stmts):
path_stmts = get_path_stmts(results, model, stmts)
path_genes = get_path_genes(path_stmts)
# Get UUIDs to use as filter
path_uuids = [list(path.keys()) for path in path_stmts]
all_path_uuids = []
for p in path_uuids:
all_path_uuids += p
#filtered_stmts = ac.filter_gene_list(stmts, path_genes, 'one')
filtered_stmts = ac.filter_uuid_list(stmts, all_path_uuids)
ac.dump_statements(filtered_stmts, 'output/korkut_cyjs_model.pkl')
ca = CyJSAssembler(filtered_stmts)
cm = ca.make_model()
ca.set_CCLE_context(['SKMEL28_SKIN'])
ca.save_json('output/korkut_model')