def post(self):
"""Process text with EIDOS and return biology INDRA Statements.
Parameters
----------
text : str
The text to be processed.
webservice : Optional[str]
An Eidos reader web service URL to send the request to.
If None, the reading is assumed to be done with the Eidos JAR
rather than via a web service. Default: None
Returns
-------
statements : list[indra.statements.Statement.to_json()]
A list of extracted INDRA Statements.
"""
args = request.json
text = args.get('text')
webservice = args.get('webservice')
if not webservice:
abort(400, 'No web service address provided.')
ep = eidos.process_text_bio(text, webservice=webservice)
return _stmts_from_proc(ep)
def test_process_text_bio():
ep = eidos.process_text_bio('virus increases death')
assert ep is not None
assert len(ep.statements) == 1
stmt = ep.statements[0]
from indra.statements import Activation
assert isinstance(stmt, Activation)
def test_process_text_bio(mock_read):
mock_read.return_value = _read_eidos_sentence_json()
ep = eidos.process_text_bio('virus increases death')
assert ep is not None
assert len(ep.statements) == 1
stmt = ep.statements[0]
from indra.statements import Activation
assert isinstance(stmt, Activation)