def _get_target(self, target_arg):
target_str = str(target_arg)
target_str = self.decode_description('<ekb>' + target_str + '</ekb>')
tp = TripsProcessor(target_str)
terms = tp.tree.findall('TERM')
term_id = terms[0].attrib['id']
agent = tp._get_agent_by_id(term_id, None)
return agent
def process_xml(xml_string):
"""Return a TripsProcessor by processing a TRIPS EKB XML string.
Parameters
----------
xml_string : str
A TRIPS extraction knowledge base (EKB) string to be processed.
http://trips.ihmc.us/parser/api.html
Returns
-------
tp : TripsProcessor
A TripsProcessor containing the extracted INDRA Statements
in tp.statements.
"""
tp = TripsProcessor(xml_string)
if tp.tree is None:
return None
tp.get_activations_causal()
tp.get_activations_stimulate()
tp.get_complexes()
tp.get_modifications()
tp.get_active_forms()
tp.get_active_forms_state()
tp.get_activations()
tp.get_translocation()
tp.get_regulate_amounts()
tp.get_degradations()
tp.get_syntheses()
return tp
def process_xml(xml_string):
"""Return a TripsProcessor by processing a TRIPS EKB XML string.
Parameters
----------
xml_string : str
A TRIPS extraction knowledge base (EKB) string to be processed.
http://trips.ihmc.us/parser/api.html
Returns
-------
tp : TripsProcessor
A TripsProcessor containing the extracted INDRA Statements
in tp.statements.
"""
tp = TripsProcessor(xml_string)
if tp.tree is None:
return None
tp.get_activations_causal()
tp.get_activations_stimulate()
tp.get_complexes()
tp.get_modifications()
tp.get_active_forms()
tp.get_active_forms_state()
tp.get_activations()
tp.get_translocation()
tp.get_degradations()
tp.get_syntheses()
return tp
