def test_get_schema_url(self):
# given
schema_template = MagicMock(name='schema_template')
ingest_api = MagicMock(name='ingest_api')
latest_url = 'https://schema.humancellatlas.org/type/biomaterial/5.0.0/donor_organism'
spec = {
'schema': {
'high_level_entity': 'type',
'domain_entity': 'biomaterial',
'module': 'donor_organism',
'url': latest_url
}
}
schema_template.lookup = MagicMock(name='lookup', return_value=spec)
template_manager = TemplateManager(schema_template, ingest_api)
template_manager.get_latest_schema_url = MagicMock(
return_value=latest_url)
# when:
url = template_manager.get_schema_url('cell_suspension')
# then:
self.assertEqual(
'https://schema.humancellatlas.org/type/biomaterial/5.0.0/donor_organism',
url)
def test_create_row_template_with_default_values(self, determine_strategy, build_raw):
# given:
schema_template = MagicMock('schema_template')
ingest_api = MagicMock(name='ingest_api')
# and:
schema_url = 'http://schema.sample.com/profile'
self._mock_schema_lookup(schema_template, schema_url=schema_url, main_category='profile',
object_type='profile_type')
# and:
build_raw.return_value = MagicMock('column_spec')
determine_strategy.return_value = FakeConversion('')
# and:
workbook = Workbook()
worksheet = workbook.create_sheet('profile')
worksheet['A4'] = 'profile.name'
# when:
template_manager = TemplateManager(schema_template, ingest_api)
template_manager.get_schema_url = MagicMock(return_value=schema_url)
row_template = template_manager.create_row_template(worksheet)
# then:
content_defaults = row_template.default_values
self.assertIsNotNone(content_defaults)
self.assertEqual(schema_url, content_defaults.get('describedBy'))
self.assertEqual('profile', content_defaults.get('schema_type'))
def test_create_row_template_with_default_values(self, determine_strategy):
# given:
schema_template = MagicMock('schema_template')
ingest_api = MagicMock(name='mock_ingest_api')
# and:
domain_entity = "profile/profile_type"
schema_url = "http://schema.sample.com/profile"
schema_template.get_tabs_config = MagicMock()
schema_template.lookup_metadata_schema_name_given_title = MagicMock(
return_value="profile_type")
schema_template.get_latest_schema = MagicMock(return_value=schema_url)
schema = {
"schema": {
"domain_entity": domain_entity,
"url": schema_url
}
}
property_schema = {
"description": "Property description",
"value_type": "string"
}
spec_map = {"profile_type": schema, "profile.name": property_schema}
schema_template.lookup_property_from_template = lambda key: spec_map.get(
key)
# and:
determine_strategy.return_value = FakeConversion('')
# and:
workbook = Workbook()
worksheet = workbook.create_sheet('profile')
worksheet['A4'] = 'profile.name'
ingest_worksheet = IngestWorksheet(worksheet)
# when:
template_manager = TemplateManager(schema_template, ingest_api)
template_manager.get_schema_url = MagicMock(return_value=schema_url)
row_template = template_manager.create_row_template(ingest_worksheet)
# then:
content_defaults = row_template.default_values
self.assertIsNotNone(content_defaults)
self.assertEqual(schema_url, content_defaults.get('describedBy'))
self.assertEqual('profile', content_defaults.get('schema_type'))