def test_create_authors_with_invalid_affiliation():
"""Test case when an affiliation has no valid id."""
text = "A. Einstein1, N. Bohr2\n" "\n" "ETH\n" "2 Københavns Universitet"
with pytest.raises(ValueError) as excinfo:
create_authors(text)
assert "Cannot identify type of affiliations" in str(excinfo.value)
def test_create_authors_author_blocks_by_affiliation():
text = ("K. Sachs, F. Schwennsen\n"
"DESY, D 22607 Hamburg, Germany\n"
"\n"
"A. Holtkamp, M. Moskovic\n"
"CERN, CH 1211 Geneva 23, Switzerland\n"
"\n"
"T. Schwander\n"
"SLAC, Stanford, USA\n")
with pytest.raises(ValueError) as excinfo:
create_authors(text)
assert "Authors grouped by affiliation? - Comming soon" in str(
excinfo.value)
def test_create_authors_with_missing_affid():
"""Test case when `create_authors` thinks every author should have an affid.
This might happen because someone is missing affid or has a number in
his/her name so it's tricking `create_authors`.
"""
text = "A. Einstein, N. Bohr2"
result = create_authors(text)
expected = [
{
"fullname": "A. Einstein",
"affiliations": [],
"ids": [],
"emails": []
},
{
"fullname": "N. Bohr",
"affiliations": [],
"ids": [],
"emails": []
},
]
warning = "Unresolved aff-ID or stray footnote symbol. Problematic author and aff-id: N. Bohr 2"
assert expected == result["authors"]
assert warning in result["warnings"]
def test_create_authors_when_aff_line_ends_in_number():
text = (
"T.M. Liss\n"
"1\n"
"L. Littenberg\n"
"2\n"
"\n"
"1.\n"
"Division of Science, City College of New York, 160 Convent Avenue, New York, NY 10031\n"
"2.\n"
"Physics Department, Brookhaven National Laboratory, Upton, NY 11973, USA"
)
expected = [
(
u"T.M. Liss",
[
u"Division of Science, City College of New York, 160 Convent Avenue, New York, NY 10031"
],
),
(
u"L. Littenberg",
[
u"Physics Department, Brookhaven National Laboratory, Upton, NY 11973, USA"
],
),
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_without_affiliations():
text = (
"K. Berkelman, D. Cords, R. Felst, E. Gadermann, G. Grindhammer, "
"H. Hultschig, P. Joos, W. Koch, U. Kötz, H. Krehbiel, D. Kreinick, "
"J. Ludwig, K.-H. Mess, K.C. Moffeit, A. Petersen, G. Poelz, "
"J. Ringel, K. Sauerberg, P. Schmüser, G. Vogel, B.H. Wiik, G. Wolf")
expected = [
(u"K. Berkelman", []),
(u"D. Cords", []),
(u"R. Felst", []),
(u"E. Gadermann", []),
(u"G. Grindhammer", []),
(u"H. Hultschig", []),
(u"P. Joos", []),
(u"W. Koch", []),
(u"U. Kötz", []),
(u"H. Krehbiel", []),
(u"D. Kreinick", []),
(u"J. Ludwig", []),
(u"K.-H. Mess", []),
(u"K.C. Moffeit", []),
(u"A. Petersen", []),
(u"G. Poelz", []),
(u"J. Ringel", []),
(u"K. Sauerberg", []),
(u"P. Schm\xfcser", []),
(u"G. Vogel", []),
(u"B.H. Wiik", []),
(u"G. Wolf", []),
]
result = create_authors(text)
assert expected == result["authors"]
assert "Found no affiliations (empty line needed)" in result["warnings"]
def test_create_authors_comma_wrong_position():
"""Test case when there is comma before affiliation id."""
text = (
"Y. Bao,\n"
"1\n"
"and A. Lambrecht,\n"
"1,\n"
"2\n"
"\n"
"1\n"
"Department of Physics, University of Florida, Gainesville, Florida 32611\n"
"2\n"
"Laboratoire Kastler-Brossel, CNRS, ENS, Universit ́e Pierre et Marie Curie case 74, Campus Jussieu, F-75252 Paris Cedex 05, France\n"
)
expected = [
(
u"Y. Bao",
[
u"Department of Physics, University of Florida, Gainesville, Florida 32611"
],
),
(
u"A. Lambrecht",
[
u"Department of Physics, University of Florida, Gainesville, Florida 32611",
u"Laboratoire Kastler-Brossel, CNRS, ENS, Universit \u0301e Pierre et Marie Curie case 74, Campus Jussieu, F-75252 Paris Cedex 05, France",
],
),
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_affiliation_with_numbers_and_letters():
text = (
"O. Buchmueller\n"
"1\n"
"K. Agashe\n"
"2\n"
"\n"
"1.\n"
"High Energy Physics Group, Blackett Laboratory, Imperial College, Prince Consort Road, London SW7 2AZ, UK\n"
"2.\n"
"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA\n"
)
expected = [
(
u"O. Buchmueller",
[
u"High Energy Physics Group, Blackett Laboratory, Imperial College, Prince Consort Road, London SW7 2AZ, UK"
],
),
(
u"K. Agashe",
[
u"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA"
],
),
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_with_many_affiliations():
text = ("F. Durães1,2,3,4\n"
"\n"
"1 CERN\n"
"2 Fermilab\n"
"3 Lund University\n"
"4 Instituto de Física, Universidade de São Paulo")
expected = [
{
"fullname":
"F. Dur\xe3es",
"affiliations": [
"CERN",
"Fermilab",
"Lund University",
"Instituto de F\xedsica, Universidade de S\xe3o Paulo",
],
"ids": [],
"emails": [],
},
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_no_commas_between_authors():
text = (
"C. Patrignani1 K. Agashe2 G. Aielli1,2\n"
"\n"
"1 Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy\n"
"2 University of Maryland, Department of Physics, College Park, MD 20742-4111, USA"
)
expected = [
(
u"C. Patrignani",
[
u"Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy"
],
),
(
u"K. Agashe",
[
u"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA"
],
),
(
u"G. Aielli",
[
u"Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy",
u"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA",
],
),
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_with_no_text():
text = None
expected = {}
result = create_authors(text)
assert expected == result
def test_create_authors_space_between_affids():
text = "Y.X. Ali1, 20, E I Andronov20\n" "\n" "1 CERN\n" "20 DESY"
expected = [(u"Y.X. Ali", [u"CERN", u"DESY"]),
(u"E I Andronov", [u"DESY"])]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_handles_spaces_at_the_end_of_an_author_or_affiliation(
):
text = "J. Smith1 \n" "\n" "1 University of somewhere "
expected = [(u"J. Smith", [u"University of somewhere"])]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_with_no_firstnames():
text = "Einstein, Bohr"
expected = [(u"Einstein", []), (u"Bohr", [])]
result = create_authors(text)
assert expected == result["authors"]
assert "Author without firstname: Einstein" in result["warnings"]
def test_create_authors_unused_affiliation():
text = "K. Sachs 1, F. Schwennsen 1\n" "\n" "1 DESY\n" "2 CERN\n"
expected = [(u"K. Sachs", ["DESY"]), (u"F. Schwennsen", ["DESY"])]
result = create_authors(text)
assert expected == result["authors"]
assert "Unused affiliation-IDs: ['2']" in result["warnings"]
def test_create_authors_ignores_space_between_authors_and_affiliations():
text = "F. Lastname1, F.M. Otherlastname1,2\n" "\n" "1 CERN\n" "2 Otheraffiliation"
expected = [
(u"F. Lastname", [u"CERN"]),
(u"F.M. Otherlastname", [u"CERN", u"Otheraffiliation"]),
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_note_symbols():
"""Test authors which have symbols like † and ∗"""
text = "Y.X. Aduszkiewicž†1, 20, E I Andronov20∗\n" "\n" "† CERN\n" "∗ DESY"
expected = [(u"Y.X. Aduszkiewic\u017e", [u"CERN"]),
(u"E I Andronov", [u"DESY"])]
warning = "CAUTION! Using symbols (# and stuff) as aff-IDs."
result = create_authors(text)
assert expected == result["authors"]
assert warning in result["warnings"]
def test_create_authors_note_footnotes():
"""Test authors which have some footnote symbols like † and ∗"""
text = "Y.X. Ali†1, 20, E I Andronov20∗\n" "\n" "1 CERN\n" "20 DESY"
expected = [(u"Y.X. Ali", [u"CERN", u"DESY"]),
(u"E I Andronov", [u"DESY"])]
warning = u"Unresolved aff-ID or stray footnote symbol. Problematic author and aff-id: Y.X. Ali †"
result = create_authors(text)
assert expected == result["authors"]
assert warning in result["warnings"]
def test_create_authors_with_affid_but_missing_affiliation():
"""Test case when some author has an affiliation id but no affiliation."""
text = "A. Einstein1, N. Bohr2\n" "\n" "2 Københavns Universitet"
result = create_authors(text)
expected = [(u"A. Einstein", []),
(u"N. Bohr", [u"K\xf8benhavns Universitet"])]
warning = "Unresolved aff-ID or stray footnote symbol. Problematic author and aff-id: A. Einstein 1"
assert expected == result["authors"]
assert warning in result["warnings"]
def test_create_authors_with_one_author_missing_affiliation():
"""Test case when some author doesn't have an affiliation."""
text = "A. Einstein, N. Bohr1,2\n" "\n" "1 ETH\n" "2 Københavns Universitet"
result = create_authors(text)
expected = [
(u"A. Einstein", []),
(u"N. Bohr", [u"ETH", u"K\xf8benhavns Universitet"]),
]
warning = "Author without affiliation-id. Problematic author: A. Einstein"
assert expected == result["authors"]
assert warning in result["warnings"]
def test_create_authors_no_commas_between_affids():
text = (
"C. Patrignani\n"
"1,\n"
"K. Agashe\n"
"2,\n"
"G. Aielli\n"
"1\n"
"2\n"
"\n"
"1.\n"
"Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy\n"
"2.\n"
"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA"
)
expected = [
{
"fullname":
"C. Patrignani",
"affiliations": [
"Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy"
],
"ids": [],
"emails": [],
},
{
"fullname":
"K. Agashe",
"affiliations": [
"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA"
],
"ids": [],
"emails": [],
},
{
"fullname":
"G. Aielli",
"affiliations": [
"Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy",
"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA",
],
"ids": [],
"emails": [],
},
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_handles_spaces_at_the_end_of_an_author_or_affiliation(
):
text = "J. Smith1 \n" "\n" "1 University of somewhere "
expected = [("J. Smith", ["University of somewhere"])]
expected = [
{
"fullname": "J. Smith",
"affiliations": ["University of somewhere"],
"ids": [],
"emails": [],
},
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_with_letters():
text = "J. Mills a L. di Caprio\n" "B. Smith bb\n" "\n" "a CERN\n" "bb Fermilab\n"
expected = [
(u"J. Mills", ["CERN"]),
(u"L. di Caprio", []),
(u"B. Smith", ["Fermilab"]),
]
warnings = [
'Is this part of a name or missing aff-id? "di" in a L. di Caprio',
"Author without affiliation-id. Problematic author: L. di Caprio",
]
result = create_authors(text)
assert expected == result["authors"]
assert all(warning in result["warnings"] for warning in warnings)
def test_create_authors_bad_author_lines():
text = ("A. Aduszkiewicz\n"
"1\n"
", Y.X. Ali\n"
"1,20\n"
", E I Andronov\n"
"20\n"
", Einstein\n"
"13,15\n"
"\n"
"1 CERN\n"
"20 DESY\n"
"13 ETH ZÜRICH\n"
"15 PRINCETON\n")
expected = [
{
"fullname": "A. Aduszkiewicz",
"affiliations": ["CERN"],
"ids": [],
"emails": [],
},
{
"fullname": "Y.X. Ali",
"affiliations": ["CERN", "DESY"],
"ids": [],
"emails": [],
},
{
"fullname": "E I Andronov",
"affiliations": ["DESY"],
"ids": [],
"emails": []
},
{
"fullname": "Einstein",
"affiliations": ["ETH Z\xdcRICH", "PRINCETON"],
"ids": [],
"emails": [],
},
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_with_affiliations():
text = ("F. Durães1, A.V. Giannini2, V.P. Gonçalves3,4 and F.S. Navarra2\n"
" \n"
"1 CERN\n"
"2 Fermilab\n"
"3 Lund University\n"
"4 Instituto de Física, Universidade de São Paulo")
expected = [
{
"fullname": "F. Dur\xe3es",
"affiliations": ["CERN"],
"ids": [],
"emails": []
},
{
"fullname": "A.V. Giannini",
"affiliations": ["Fermilab"],
"ids": [],
"emails": [],
},
{
"fullname":
"V.P. Gon\xe7alves",
"affiliations": [
"Lund University",
"Instituto de F\xedsica, Universidade de S\xe3o Paulo",
],
"ids": [],
"emails": [],
},
{
"fullname": "F.S. Navarra",
"affiliations": ["Fermilab"],
"ids": [],
"emails": [],
},
]
result = create_authors(text)
assert expected == result["authors"]
assert "warnings" not in result.keys()
def test_create_authors_with_many_affiliations():
text = ("F. Durães1,2,3,4\n"
"\n"
"1 CERN\n"
"2 Fermilab\n"
"3 Lund University\n"
"4 Instituto de Física, Universidade de São Paulo")
expected = [(
u"F. Dur\xe3es",
[
u"CERN",
u"Fermilab",
u"Lund University",
u"Instituto de F\xedsica, Universidade de S\xe3o Paulo",
],
)]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_ignores_space_between_authors_and_affiliations():
text = "F. Lastname1, F.M. Otherlastname1,2\n" "\n" "1 CERN\n" "2 Otheraffiliation"
expected = [
{
"fullname": "F. Lastname",
"affiliations": ["CERN"],
"ids": [],
"emails": []
},
{
"fullname": "F.M. Otherlastname",
"affiliations": ["CERN", "Otheraffiliation"],
"ids": [],
"emails": [],
},
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_no_empty_line():
text = ("K. Sachs1, M. Moskovic2\n"
"1 DESY, D 22607 Hamburg, Germany\n"
"2 CERN, CH 1211 Geneva 23, Switzerland\n")
expected = [
(u"K. Sachs", []),
(u"M. Moskovic", []),
(u"DESY", []),
(u"D", []),
(u"Hamburg", []),
(u"Germany", []),
(u"CERN", []),
(u"CH", []),
(u"Geneva", []),
(u"Switzerland", []),
]
result = create_authors(text)
assert expected == result["authors"]
assert "Found no affiliations (empty line needed)" in result["warnings"]
def test_create_authors_space_between_affids():
text = "Y.X. Ali1, 20, E I Andronov20\n" "\n" "1 CERN\n" "20 DESY"
expected = [("Y.X. Ali", ["CERN", "DESY"]), ("E I Andronov", ["DESY"])]
expected = [
{
"fullname": "Y.X. Ali",
"affiliations": ["CERN", "DESY"],
"ids": [],
"emails": [],
},
{
"fullname": "E I Andronov",
"affiliations": ["DESY"],
"ids": [],
"emails": []
},
]
result = create_authors(text)
assert expected == result["authors"]
def test_create_authors_with_no_firstnames():
text = "Einstein, Bohr"
expected = [
{
"fullname": "Einstein",
"affiliations": [],
"ids": [],
"emails": []
},
{
"fullname": "Bohr",
"affiliations": [],
"ids": [],
"emails": []
},
]
result = create_authors(text)
assert expected == result["authors"]
assert "Author without firstname: Einstein" in result["warnings"]
def test_create_authors_affids_with_dots():
text = (
"C. Patrignani\n"
"1,\n"
"K. Agashe\n"
"2,\n"
"G. Aielli\n"
"1,\n"
"2\n"
"\n"
"1.\n"
"Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy\n"
"2.\n"
"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA"
)
expected = [
(
u"C. Patrignani",
[
u"Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy"
],
),
(
u"K. Agashe",
[
u"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA"
],
),
(
u"G. Aielli",
[
u"Universita di Bologna and INFN, Dip. Scienze per la Qualita della Vita, I-47921, Rimini, Italy",
u"University of Maryland, Department of Physics, College Park, MD 20742-4111, USA",
],
),
]
result = create_authors(text)
assert expected == result["authors"]
