def __init__(self, src, length_src=[], version=DEFAULT_GFF_VERSION): # call the superclass IntervalFile.__init__(self, src, length_src) # set our deep and shallow iterators # (self.file is determined automatically by the superclass from the src argument) self.iterator = _gff_iterator(self.file, version) self.interval_iterator = _gff_interval_iterator(self.file)
def __init__(self, src):
# call the superclass
IntervalFile.__init__(self, src, length_src)
# set our deep and shallow iterators
# (self.file is determined automatically by the superclass from the src argument)
self.iterator = _bed_iterator(self.file)
self.interval_iterator = _bed_interval_iterator(self.file)
def __init__(self, src):
# call the superclass
IntervalFile.__init__(self, src, length_src)
# set our deep and shallow iterators
# (self.file is determined automatically by the superclass from the src argument)
self.iterator = _bed_iterator(self.file)
self.interval_iterator = _bed_interval_iterator(self.file)
def __init__(self, src, length_src=[], version=DEFAULT_GFF_VERSION, build=DEFAULT_BUILD):
# call the superclass
IntervalFile.__init__(self, src, length_src)
# list to store version & build - this allows passing to and updating by iterator
self.data = [str(version), str(build)]
# set our deep and shallow iterators
# (self.file is determined automatically by the superclass from the src argument)
self.iterator = _gff_iterator(self.file, self.data)
self.interval_iterator = _gff_interval_iterator(self.file)
def __init__(self, src, length_src=[], version=DEFAULT_GFF_VERSION, build=DEFAULT_BUILD):
# call the superclass
IntervalFile.__init__(self, src, length_src)
# list to store version & build - this allows passing to and updating by iterator
self.data = [str(version), str(build)]
# set our deep and shallow iterators
# (self.file is determined automatically by the superclass from the src argument)
self.iterator = _gff_iterator(self.file, self.data)
self.interval_iterator = _gff_interval_iterator(self.file)
