def test_dcmread_get_dcmdir_qt(self):
dirpath = dcmr.get_dcmdir_qt()
#self.data3d, self.metadata = dcmr.dcm_read_from_dir(self.dcmdir)
reader = dcmr.DicomReader(dirpath)
self.data3d = reader.get_3Ddata()
self.metadata = reader.get_metaData()
def test_dcmread_get_dcmdir_qt(self):
dirpath = dcmr.get_dcmdir_qt()
#self.data3d, self.metadata = dcmr.dcm_read_from_dir(self.dcmdir)
reader = dcmr.DicomReader(dirpath)
self.data3d = reader.get_3Ddata()
self.metadata = reader.get_metaData()
dest='zoom', default='1',
help=help['zoom'])
parser.add_option('-d', '--debug', action='store_true',
dest='debug',
help=help['debug'])
(options, args) = parser.parse_args()
logger.setLevel(logging.WARNING)
ch = logging.StreamHandler()
logger.addHandler(ch)
if options.debug:
logger.setLevel(logging.DEBUG)
if options.dcmdir is None:
dcmdir = get_dcmdir_qt()
if dcmdir is None:
raise IOError('No DICOM directory!')
else:
dcmdir = options.dcmdir
dcr = DicomReader(os.path.abspath(dcmdir), gui=True)
data3d = dcr.get_3Ddata()
metadata = dcr.get_metaData()
zoom = eval(options.zoom)
if options.zoom != 1:
import scipy
import scipy.ndimage
# oom = float(options.zoom)
# mport pdb; pdb.set_trace()
parser.add_option('-d',
'--debug',
action='store_true',
dest='debug',
help=help['debug'])
(options, args) = parser.parse_args()
logger.setLevel(logging.WARNING)
ch = logging.StreamHandler()
logger.addHandler(ch)
if options.debug:
logger.setLevel(logging.DEBUG)
if options.dcmdir is None:
dcmdir = get_dcmdir_qt()
if dcmdir is None:
raise IOError('No DICOM directory!')
else:
dcmdir = options.dcmdir
dcr = DicomReader(os.path.abspath(dcmdir), gui=True)
data3d = dcr.get_3Ddata()
metadata = dcr.get_metaData()
zoom = eval(options.zoom)
if options.zoom != 1:
import scipy
import scipy.ndimage
# oom = float(options.zoom)
# mport pdb; pdb.set_trace()