def proc_wrapper(self, input_entry):
''' Wrapper for processing function using the image object
@param input_entry: [image_number, total_images, image_object]
@return: image object
'''
try:
if self.stage == 'import':
if self.init.params.cctbx.selection.select_only.flag_on:
img_object = input_entry[2]
img_object.import_int_file(self.init)
else:
img_object = img.SingleImage(input_entry, self.init)
img_object.import_image()
elif self.stage == 'process':
img_object = input_entry[2]
img_object.process()
elif self.stage == 'all':
if self.init.params.cctbx.selection.select_only.flag_on:
img_object = input_entry[2]
img_object.import_int_file(self.init)
else:
img_object = img.SingleImage(input_entry, self.init)
img_object.import_image()
img_object.process()
except Exception as e:
pass
return img_object
def run_one_image(image, init):
# Import image
single_image = img.SingleImage(image, init, verbose=True)
img_object = single_image.import_image()
# Exit if the image does not have diffraction
if img_object.fail == 'failed triage':
return img_object
# Process image
img_object.process(single_image=True)
return img_object
def run(self):
if self.input_type == 'image':
img_object = img.SingleImage(self.input_entry, self.init)
img_object.import_image()
elif self.input_type == 'object':
img_object = self.input_entry[2]
img_object.import_int_file(self.init)
else:
img_object = None
if self.init.params.image_conversion.convert_only:
return img_object
else:
img_object.process()
return img_object
def run(self):
if self.abort:
raise Exception('IOTA: Run aborted by user')
else:
if self.input_type == 'image':
img_object = img.SingleImage(self.input_entry, self.init)
img_object.import_image()
elif self.input_type == 'object':
img_object = self.input_entry[2]
img_object.import_int_file(self.init)
if self.init.params.image_conversion.convert_only:
return img_object
else:
img_object.process()
return img_object
def run(self):
img_object = None
if self.input_type == 'image':
img_object = img.SingleImage(self.input_entry, self.init)
img_object.import_image()
print 'DEBUG: Imported image'
elif self.input_type == 'object':
img_object = self.input_entry[2]
img_object.import_int_file(self.init)
if self.init.params.image_conversion.convert_only:
return img_object
else:
img_object.process()
#result_file = os.path.splitext(img_object.obj_file)[0] + '.fin'
#ep.dump(result_file, img_object)
return img_object