def for_single_image(cls,
info,
params,
action_code="spotfinding",
verbose=False,
*args,
**kwargs):
from iota.components.iota_image import ImageImporter
from iota.components.iota_processing import IOTAImageProcessor
# Initialize processing parameters
cls.info = info
cls.params = params
cls.action_code = action_code
cls.verbose = verbose
cls.importer = ImageImporter(info=cls.info, write_output=False)
cls.integrator = IOTAImageProcessor(
iparams=cls.params,
write_pickle=False,
write_logs=False,
last_stage=action_code,
)
return cls(*args, **kwargs)
def __init__(
self,
parent,
data_list=None,
term_file=None,
proc_params=None,
backend="dials",
n_proc=0,
run_indexing=False,
run_integration=False,
):
Thread.__init__(self)
self.parent = parent
self.data_list = data_list
self.term_file = term_file
self.terminated = False
self.backend = backend
self.run_indexing = run_indexing
self.run_integration = run_integration
if n_proc > 0:
self.n_proc = n_proc
else:
self.n_proc = multiprocessing.cpu_count() - 2
if self.backend == "dials":
# Modify default DIALS parameters
# These parameters will be set no matter what
proc_params.output.experiments_filename = None
proc_params.output.indexed_filename = None
proc_params.output.strong_filename = None
proc_params.output.refined_experiments_filename = None
proc_params.output.integrated_filename = None
proc_params.output.integrated_experiments_filename = None
proc_params.output.profile_filename = None
proc_params.output.integration_pickle = None
from iota.components.iota_processing import IOTAImageProcessor
self.processor = IOTAImageProcessor(phil=proc_params)