def __init__(self, verbose=False, visual_debug=False):
self.verbose = verbose
self.visual_debug = visual_debug
ipdb.launch_ipdb_on_exception()
# Control Stuff
self.researched_warpgate = False # Remove me later
# Managers and controllers
self.worker_controller = WorkerController(bot=self,
verbose=self.verbose)
self.army_controller = ArmyController(bot=self, verbose=self.verbose)
self.scouting_controller = ScoutingController(bot=self,
verbose=self.verbose)
self.upgrades_controller = UpgradesController(bot=self,
verbose=self.verbose)
self.robotics_facility_controller = RoboticsFacilitiyController(
bot=self,
verbose=self.verbose,
)
self.gateway_controller = GatewayController(
bot=self, verbose=self.verbose, auto_morph_to_warpgate=True)
self.building_controller = BuildingController(bot=self,
verbose=self.verbose)
self.event_manager = EventManager()
self.build_order_controller = BuildOrderController(
verbose=self.verbose, bot=self)
self.coordinator = Coordinator(bot=self,
verbose=self.verbose,
build_order='three_gate_blink_all_in')
self.order_queue = []
def callback():
import ipdb
with ipdb.launch_ipdb_on_exception():
code = request.args.get('code')
client = create_client()
r = client.request_access_token(code)
access_token, expires, uid = r.access_token, r.expires, r.uid
client.set_access_token(access_token, expires)
u = client.users.show.get(uid=uid)
user = User.query.filter_by(uid=uid).first()
if not user:
user = User(username=u.screen_name,
uid=u.id,
status_count=u.statuses_count,
friends_count=u.friends_count,
email='*****@*****.**',
followers_count=u.followers_count,
auth_token=access_token,
expired_time=expires,
image_url=u.avatar_large or u.profile_image_url)
db.session.add(user)
db.session.commit()
token = user.generate_confirmation_token()
user.confirm(token)
login_user(user)
return redirect(url_for('main.index'))
def normal_data_gen(self, X_train, y_train=None, test=False):
"""normal data generator for training
"""
while True:
if not test:
base_id = np.random.permutation(range(len(X_train)))
else:
base_id = list(range(len(X_train)))
for start in range(0, len(X_train), self.batch_size):
end = min(start + self.batch_size, len(X_train))
idx = base_id[start:end]
batch_df = X_train.iloc[idx]
x_batch = batch_df[self.train_cols]
if self.proc_per_gen:
with launch_ipdb_on_exception():
x_batch = self.proc_per_gen(x_batch)
if y_train is not None:
y_batch = y_train.iloc[idx]
if self.out_size:
y_batch = self.dup_y(y_batch)
if self.onehot_size:
y_batch = np.identity(self.onehot_size)[y_batch.values]
yield x_batch, y_batch
else:
yield x_batch
def build_cfg(instructions: List[Instruction], loader: Loader) -> CFG:
"""
Check that calls matches returns and that syscalls and non-jumps do not change the control flow.
"""
stack = [] # type: List[int]
builder = CfgBuilder(instructions)
for (i, instruction) in enumerate(instructions):
if i > 0:
previous = instructions[i - 1]
if (previous.iclass in BLOCK_TERMINATORS
or previous.ip + previous.size != instruction.ip):
builder.add_edge(previous, instruction)
if previous.iclass == InstructionClass.ptic_return:
if len(stack) != 0:
return_ip = stack.pop()
if return_ip != instruction.ip:
previous_loc = loader.find_location(instructions[i -
1].ip)
instruction_loc = loader.find_location(instruction.ip)
return_loc = loader.find_location(return_ip)
l.warning(
"unexpected call return {} from {} found: expected {}"
.format(instruction_loc, previous_loc, return_loc))
stack = []
if instruction.iclass == InstructionClass.ptic_call:
return_ip = instruction.ip + instruction.size
stack.append(return_ip)
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
return builder.cfg()
def balanced_data_gen(self, X_train, y_train, sample_size=None):
"""balanced data generator for training
"""
pos_idx = list(X_train[y_train == 1].index.values)
neg_idx = list(X_train[y_train == 0].index.values)
neg_size = int(sample_size * self.pos_neg_ratio)
print(len(pos_idx), len(neg_idx), neg_size)
while True:
pos_sample = random.sample(pos_idx, sample_size)
neg_sample = random.sample(neg_idx, neg_size)
sample_idx = np.concatenate([pos_sample, neg_sample])
base_df = X_train.loc[sample_idx].reset_index(drop=True)
base_y = y_train.loc[sample_idx].reset_index(drop=True)
base_id = np.random.permutation(len(base_df))
for start in range(0, len(base_df), self.batch_size):
end = min(start + self.batch_size, len(base_df))
batch_df_id = base_id[start:end]
batch_df = base_df.iloc[batch_df_id]
x_batch = batch_df[self.train_cols]
if self.proc_per_gen:
with launch_ipdb_on_exception():
x_batch = self.proc_per_gen(x_batch)
y_batch = base_y.iloc[batch_df_id]
if self.out_size:
y_batch = self.dup_y(y_batch)
if self.onehot_size:
y_batch = np.identity(self.onehot_size)[y_batch.values]
yield x_batch, y_batch
def dump_embedd_layer(res_dir, conf):
embedd_conf = conf[0]
emb_dict = dict()
model = embedded_mlp(conf)
for j in tqdm(range(5)):
fold_dict = dict()
model.load_weights(Path(res_dir) / f'fold{j}' / 'weights.hdf5')
for i, (c, _, m) in tqdm(enumerate(embedd_conf)):
train = feather.read_dataframe(
f'features/NN/train_nejumi_v2/{c}.ftr')
train_orig = feather.read_dataframe(f'features/X_train_nejumi.ftr',
columns=[c])
train = pd.concat([
train.rename({c: 'enc'}, axis=1),
train_orig.rename({c: 'orig'}, axis=1)
],
axis=1)
train = train.drop_duplicates()
import ipdb
with ipdb.launch_ipdb_on_exception():
inputs = model.get_layer(f'{c}').input
outputs = model.layers[i + 76].output
emb_out = Model(input=inputs, output=outputs)
emb = np.concatenate(emb_out.predict(train.enc.values), axis=0)
conv_dict = dict()
for i, v in enumerate(train.orig.values):
conv_dict[v] = emb[i]
fold_dict[c] = conv_dict
# fold_idx = np.load(res_dir / f'fold{j}tes_ind.npy')
emb_dict[f'fold_{j}'] = fold_dict
return emb_dict
def main():
parser = optparse.OptionParser(usage='Usage. %prog [options] directory_or_epub_file')
parser.add_option('--debug', action='store_true', dest='debug', default=False,
help='Debug mode')
parser.add_option('--no_images', action='store_false', dest='images', default=True,
help='Disable images.')
parser.add_option('--sword', action='store_true', dest='sword', default=False,
help='Generate sword module. osis2mod anx xml2gbs from libsword-tools are needed.')
parser.add_option('--osis', action='store_true', dest='osis', default=False,
help='Write OSIS files.')
parser.add_option('--no_nonadj', action='store_true', dest='no_nonadj', default=False,
help='Do not create empty comments (with only links) for non-adjacent verse ranges')
parser.add_option('--bible_work_id', dest='bible_work_id', default='None',
help='Bible work_id (verses are linked there). "None" -> no work_id specification')
options, args = parser.parse_args()
if len(args) == 1:
input_file = args[0]
if options.debug or True:
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
Convert(options, input_file).process_epub()
else:
Convert(options, input_file).process_epub(input_file)
else:
parser.print_help()
def __iter__(self):
co = self._gen_func()
with suppress(StopIteration):
val = None
while True: #?
value = co.send(val)
if isinstance(value, AnyCall):
for i, p in enumerate(value.calls):
p.on()
val = (yield)
for i, call in enumerate(value.calls):
if call.original is not val.func:
continue
enter = (val.ret is NotImplemented)
if enter == (call.type == 'enter'):
val.which = i
break
for p in value.calls:
p.off()
continue
p = value
# container, attr = co.send(val)
import ipdb
with ipdb.launch_ipdb_on_exception():
p.on()
val = (yield)
p.off()
def transform(args, argv):
"""
Usage: {0} transform <sourceconfig> FILE ...
{0} transform <sourceconfig> --directory=DIR
Options:
-d, --directory=DIR Transform all JSON files in DIR
Transform all given JSON files. Results will be printed to stdout.
"""
config = SourceConfig.objects.get(label=args['<sourceconfig>'])
transformer = config.get_transformer()
if args['FILE']:
files = args['FILE']
else:
files = [os.path.join(args['--directory'], x) for x in os.listdir(args['--directory']) if not x.startswith('.')]
for name in files:
with open(name) as fobj:
data = fobj.read()
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
print('Parsed raw data "{}" into'.format(name))
pprint(transformer.transform(data))
print('\n')
def handle_packet_in(self, concrete_pkt):
pyretic_pkt = self.concrete2pyretic(concrete_pkt)
if self.debug_packet_in:
debugger.set_trace()
if USE_IPDB:
with debugger.launch_ipdb_on_exception():
if self.mode == 'interpreted':
output = self.policy.eval(pyretic_pkt)
else:
(output,traversed) = self.policy.track_eval(pyretic_pkt)
self.reactive0(pyretic_pkt,output,traversed)
else:
try:
if self.mode == 'interpreted':
output = self.policy.eval(pyretic_pkt)
else:
(output,traversed) = self.policy.track_eval(pyretic_pkt)
self.reactive0(pyretic_pkt,output,traversed)
except :
type, value, tb = sys.exc_info()
traceback.print_exc()
debugger.post_mortem(tb)
if self.show_traces:
print "<<<<<<<<< RECV <<<<<<<<<<<<<<<<<<<<<<<<<<"
print util.repr_plus([pyretic_pkt], sep="\n\n")
print
print ">>>>>>>>> SEND >>>>>>>>>>>>>>>>>>>>>>>>>>"
print util.repr_plus(output, sep="\n\n")
print
map(self.send_packet,output)
def makeplot(self):
base_names = self.base_names.split(',')
datasets = []
for base_name in base_names:
inputs = self.input()[base_name]
v1 = inputs[self.v1].open(decode_times=False)
v2 = inputs[self.v2].open(decode_times=False)
ds = xr.merge([v1, v2])
ds = ds.sel(zt=slice(0.0, self.z_max))
ds = ds.isel(zt=slice(None, None, self.z_step))
ds.attrs['name'] = self.get_suptitle(base_name)
datasets.append(ds)
plot_fn = length_scales.cumulant.sections.plot
import ipdb
with ipdb.launch_ipdb_on_exception():
ax = plot_fn(
datasets=datasets,
var_names=[self.v1, self.v2],
)
return ax
def handle_packet_in(self, concrete_pkt):
pyretic_pkt = self.concrete2pyretic(concrete_pkt)
if self.debug_packet_in:
debugger.set_trace()
if USE_IPDB:
with debugger.launch_ipdb_on_exception():
if self.mode == 'interpreted':
output = self.policy.eval(pyretic_pkt)
else:
(output,eval_trace) = self.policy.track_eval(pyretic_pkt,dry=False)
self.reactive0(pyretic_pkt,output,eval_trace)
else:
try:
if self.mode == 'interpreted':
output = self.policy.eval(pyretic_pkt)
else:
(output,eval_trace) = self.policy.track_eval(pyretic_pkt,dry=False)
self.reactive0(pyretic_pkt,output,eval_trace)
except :
type, value, tb = sys.exc_info()
traceback.print_exc()
debugger.post_mortem(tb)
if self.show_traces or True:
self.trace("<<<<<<<<< RECV <<<<<<<<<<<<<<<<<<<<<<<<<<", timeStamped=True)
self.trace(util.repr_plus([pyretic_pkt], sep="\n\n"))
self.trace("")
self.trace(">>>>>>>>> SEND >>>>>>>>>>>>>>>>>>>>>>>>>>", timeStamped=True)
self.trace(util.repr_plus(output, sep="\n\n"))
self.trace("")
map(self.send_packet,output)
def handle_packet_in(self, concrete_pkt):
pyretic_pkt = self.concrete2pyretic(concrete_pkt)
if self.debug_packet_in:
debugger.set_trace()
if USE_IPDB:
with debugger.launch_ipdb_on_exception():
if self.mode == 'interpreted':
output = self.policy.eval(pyretic_pkt)
else:
(output, eval_trace) = self.policy.track_eval(pyretic_pkt,
dry=False)
self.reactive0(pyretic_pkt, output, eval_trace)
else:
try:
if self.mode == 'interpreted':
output = self.policy.eval(pyretic_pkt)
else:
(output, eval_trace) = self.policy.track_eval(pyretic_pkt,
dry=False)
self.reactive0(pyretic_pkt, output, eval_trace)
except:
type, value, tb = sys.exc_info()
traceback.print_exc()
debugger.post_mortem(tb)
if self.show_traces:
print "<<<<<<<<< RECV <<<<<<<<<<<<<<<<<<<<<<<<<<"
print util.repr_plus([pyretic_pkt], sep="\n\n")
print
print ">>>>>>>>> SEND >>>>>>>>>>>>>>>>>>>>>>>>>>"
print util.repr_plus(output, sep="\n\n")
print
map(self.send_packet, output)
def handle(self, *args, **options):
parsers_to_run = filter(options.__getitem__, parsers.keys())
if not parsers_to_run:
parsers_to_run = parsers.values()
else:
parsers_to_run = [parsers[x] for x in parsers_to_run]
tasks = []
for parser in parsers_to_run:
if options['ipdb']:
with launch_ipdb_on_exception():
if options["sync"]:
parser.scrape(sync=options["sync"], cache=options["cache"])
else:
tasks.append(parser.scrape(sync=options["sync"], cache=options["cache"]))
else:
if options["sync"]:
parser.scrape(sync=options["sync"], cache=options["cache"])
else:
tasks.append(parser.scrape(sync=options["sync"], cache=options["cache"]))
if not options["sync"]:
map(lambda x: x.get(), tasks)
def test_aegan(aegan, prefix):
import ipdb
with ipdb.launch_ipdb_on_exception():
aegan.load(prefix=prefix)
from GAN.utils.vis import vis_grid
vis_grid(inverse_transform(aegan.generator.random_generate(128)), (2, 20), 'random_generate.png')
paths = map(lambda x: x.strip(), open('protocol/cuhk01-all.txt').readlines())
from load import load_image
sample = transform( np.array([load_image(path, (64, 128)) for path in paths[:128]]) )
vis_grid(inverse_transform(sample), (2, 20), 'sample.png')
vis_grid(inverse_transform(aegan.autoencoder.autoencoder.predict(sample)), (2, 20), 'reconstruct.png')
import matplotlib
matplotlib.use('Agg')
import matplotlib.pyplot as plt
codes = aegan.autoencoder.encoder.predict(sample)
# codes = aegan.generator.sample(128)
# codes = aegan.autoencoder.encoder.predict(aegan.generator.random_generate(128))
for ind, code in enumerate(codes):
n, bins, patches = plt.hist(code, 50, normed=1, facecolor='green', alpha=0.75)
plt.savefig('test/{}.pdf'.format(ind))
plt.clf()
ipdb.set_trace()
def click_run(path, config, scenario, load_demand, solve_demand, load_supply, solve_supply, load_error, export_results, pickle_shapes, save_models, log_name, api_run, debug, clear_results):
if debug:
import ipdb
with ipdb.launch_ipdb_on_exception():
run(path, config, scenario, load_demand, solve_demand, load_supply, solve_supply, load_error, export_results, pickle_shapes, save_models, log_name, api_run, clear_results)
else:
run(path, config, scenario, load_demand, solve_demand, load_supply, solve_supply, load_error, export_results, pickle_shapes, save_models, log_name, api_run, clear_results)
def make_plot(self, da_emb):
import ipdb
with ipdb.launch_ipdb_on_exception():
return make_rgb_annotation_map_image(
da_emb=da_emb,
rgb_components=self.rgb_components,
)
def feature_aegan(aegan, modelname, protoname):
with ipdb.launch_ipdb_on_exception():
aegan.load(prefix=modelname)
x = transform(load_all(protoname, (npxw, npxh)))
code = aegan.autoencoder.encoder.predict(x)
ipdb.set_trace()
def main(argv: List[str] = sys.argv) -> Any:
args = parse_arguments(argv)
if args.debug:
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
return args.func(args)
return args.func(args)
def run(self):
try:
import ipdb
with ipdb.launch_ipdb_on_exception():
_main(self.args)
return 0
except ImportError:
_main(self.args)
def main():
parser = argparse.ArgumentParser()
parser = argparse.ArgumentParser(description="Bibliography database manipulation")
parser.add_argument("--debug", action="store_true")
parser.add_argument("--logging-level", "-L",
help="Logging level: CRITICAL, ERROR, WARNING, INFO, DEBUG",
metavar="LEVEL", type=str, default="WARNING")
parser.add_argument("--data-dir", help="Path to articles directory", type=str, default=None)
subparsers = parser.add_subparsers(title='Commands', dest='_commandName')
for cmdType in Registry.commands:
cmdType().args(subparsers)
argcomplete.autocomplete(parser)
args = parser.parse_args()
if args.debug:
msg.setup(level="DEBUG")
try:
from ipdb import launch_ipdb_on_exception
except ModuleNotFoundError:
from contextlib import contextmanager
def noop():
yield
launch_ipdb_on_exception = contextmanager(noop)
else:
msg.setup(level=args.logging_level)
ddir = Database.getDataDir(dataDir=args.data_dir)
if ddir:
RequestCache(os.path.join(ddir, ".cache.pkl"))
try:
if hasattr(args, "func"):
if args.debug:
with launch_ipdb_on_exception():
args.func(args)
else:
args.func(args)
else:
parser.print_usage()
except UserException as e:
msg.error("Error: %s", e)
sys.exit(1)
except AbortException:
msg.error("Aborted")
sys.exit(1)
except (WorkExistsException, RepositoryException) as e:
msg.error(str(e))
sys.exit(1)
except:
t,v,_ = sys.exc_info()
msg.critical("Unhandled exception: %s(%s)", t.__name__, v)
sys.exit(1)
def run_transformer(config, id, datum):
transformer = config.get_transformer()
with launch_ipdb_on_exception():
graph = transformer.transform(datum)
if args.get('--regulate'):
Regulator(source_config=config).regulate(graph)
print('Parsed raw data "{}" into'.format(id))
pprint(graph.to_jsonld(in_edges=False))
print('\n')
def result(self):
"""
IMPLEMENT ME
"""
with launch_ipdb_on_exception():
#print self.init, self.others
ret = self.min_ops(0, self.init)
#print self.reason[0, self.init]
return ret
def run_transformer(config, id, datum):
transformer = config.get_transformer()
with launch_ipdb_on_exception():
graph = transformer.transform(datum)
if args.get('--regulate'):
Regulator(source_config=config).regulate(graph)
print('Parsed raw data "{}" into'.format(id))
pprint(graph.to_jsonld(in_edges=False))
print('\n')
def result(self):
with launch_ipdb_on_exception():
if any('.' in row for row in self.grid):
status = "Game has not completed"
else:
status = "Draw"
for seq in self.rows + self.columns + self.diagonals:
if self.winner(seq):
return self.winner(seq) + " won"
return status
def transform(args, argv):
"""
Usage: {0} transform <sourceconfig> FILE ...
{0} transform <sourceconfig> --directory=DIR
{0} transform --ids <raw_data_ids>...
Options:
-d, --directory=DIR Transform all JSON files in DIR
-i, --ids Provide RawDatum IDs to transform
Transform all given JSON files. Results will be printed to stdout.
"""
from ipdb import launch_ipdb_on_exception
ids = args['<raw_data_ids>']
if ids:
qs = RawDatum.objects.filter(id__in=ids)
for raw in qs.iterator():
transformer = raw.suid.source_config.get_transformer()
with launch_ipdb_on_exception():
print('Parsed raw data "{}" into'.format(raw.id))
pprint(transformer.transform(raw.datum))
print('\n')
return
config = SourceConfig.objects.get(label=args['<sourceconfig>'])
transformer = config.get_transformer()
if args['FILE']:
files = args['FILE']
else:
files = [
os.path.join(args['--directory'], x)
for x in os.listdir(args['--directory']) if not x.startswith('.')
]
for name in files:
with open(name) as fobj:
data = fobj.read()
with launch_ipdb_on_exception():
print('Parsed raw data "{}" into'.format(name))
pprint(transformer.transform(data).to_jsonld(in_edges=False))
print('\n')
def main():
try:
filename = sys.argv[1]
except IndexError:
print(USAGE)
return
from can import BLFReader
with ipdb.launch_ipdb_on_exception():
reader = BLFReader(filename)
for frame in reader:
print(frame)
def handle(self, *args, **options):
parsers_to_run = filter(lambda x: options[x], parsers.keys())
if not parsers_to_run:
parsers_to_run = parsers.values()
else:
parsers_to_run = [parsers[x] for x in parsers_to_run]
if deputies in parsers_to_run:
if options['ipdb']:
with launch_ipdb_on_exception():
deputies.deputies_list()
else:
deputies.deputies_list()
for parser in parsers_to_run:
if options['ipdb']:
with launch_ipdb_on_exception():
parser.scrape()
else:
parser.scrape()
def handle(self, *args, **options):
# TODO Handle contributors, they're not a direct 1-to-1 they'll need some love
# it's either this or catch the exception and put them in the blacklistguid table
register_nonexistent_models_with_modm()
models = get_ordered_models()
# guids first, pls
models.insert(0, models.pop(models.index(Guid)))
if not options['nodelogs'] and not options['nodelogsguids']:
merge_duplicate_users()
# merged users get blank usernames, running it twice fixes it.
merge_duplicate_users()
for django_model in models:
if not options['nodelogs'] and not options[
'nodelogsguids'] and django_model is NodeLog:
continue
elif (options['nodelogs']
or options['nodelogsguids']) and django_model is not NodeLog:
continue
if issubclass(django_model, AbstractBaseContributor) \
or django_model is ApiOAuth2Scope \
or not hasattr(django_model, 'modm_model_path'):
continue
module_path, model_name = django_model.modm_model_path.rsplit(
'.', 1)
modm_module = importlib.import_module(module_path)
modm_model = getattr(modm_module, model_name)
modm_queryset = modm_model.find(django_model.modm_query)
with ipdb.launch_ipdb_on_exception():
if hasattr(django_model, 'primary_identifier_name') and \
not issubclass(django_model, GuidMixin) and \
django_model is not NotificationSubscription:
if not options['nodelogs']:
make_guids(django_model,
page_size=django_model.migration_page_size)
if not options['nodelogsguids']:
save_bare_models(
modm_queryset,
django_model,
page_size=django_model.migration_page_size)
modm_model._cache.clear()
modm_model._object_cache.clear()
print('Took out {} trashes'.format(gc.collect()))
# Handle system tags, they're on nodes, they need a special migration
if not options['nodelogs'] and not options['nodelogsguids']:
save_bare_system_tags()
def result(self):
"""
Use multi-commodity network flow to calculate a partial order
"""
with launch_ipdb_on_exception():
order = None
if self.sufficient_keys(self.init_keys, opened=set([])):
order = self.solve_plan()
if order is None:
return "IMPOSSIBLE"
return ' '.join(str(o + 1) for o in order)
def result(self):
"""
IMPLEMENT ME
"""
with launch_ipdb_on_exception():
n = 0
for pal in palindromes(int(math.sqrt(self.a) + .5),
int(math.sqrt(self.b))):
if self.a <= pal**2 <= self.b and is_palindrome(pal**2):
n += 1
return n
def interative_test_ipdb_embed():
"""
CommandLine:
xdoctest -m dev/interactive_embed_tests.py interative_test_ipdb_embed
Example:
>>> interative_test_ipdb_embed()
"""
import ipdb
with ipdb.launch_ipdb_on_exception():
raise Exception
def main():
args = parseArgs()
if args.pdb:
try:
import ipdb
with ipdb.launch_ipdb_on_exception():
_main(args)
return 0
except ImportError:
return _main(args)
else:
return _main(args)
def main():
args = parseArgs()
if args.pdb:
try:
import ipdb
with ipdb.launch_ipdb_on_exception():
_main(args)
return 0
except ImportError:
_main(args)
else:
_main(args)
def feature(aegan, filename):
import ipdb
with ipdb.launch_ipdb_on_exception():
aegan.load(prefix='./samples/reid_aegan/aegan/50')
paths = map(lambda x: x.strip(),
open('protocol/cuhk01-all.txt').readlines())
x = transform(np.array([load_image(path, (64, 128))
for path in paths]))
code = aegan.autoencoder.encoder.predict(x)
ipdb.set_trace()
def debug_func(self, *args, **kwargs):
if not self.on_error:
return runcall(self.func, *args, **kwargs)
try:
if has_ipdb:
with launch_ipdb_on_exception():
return self.func(*args, **kwargs)
else:
return self.func(*args, **kwargs)
except Exception as e:
traceback.print_exc(file=sys.stderr)
Pdb(stdin=sys.__stdin__, stdout=sys.__stdout__).set_trace()
def test_add_item(self):
global errors
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
driver = self.driver
driver.get(self.base_url + "/")
print("Attempting logon")
# login start
driver.find_element_by_id("header_sign_in").click()
driver.find_element_by_id("logonId").click()
driver.find_element_by_id("logonId").clear()
driver.find_element_by_id("logonId").send_keys(self.username)
driver.find_element_by_id("logonPassword_id").clear()
driver.find_element_by_id("logonPassword_id").send_keys(
self.password)
driver.find_element_by_id("deliveryZipCode").clear()
driver.find_element_by_id("deliveryZipCode").send_keys("92093")
print("Submit")
driver.find_element_by_css_selector(
"#LogonFormBD input[type=submit]").click()
# login done
num_items = len(self.order)
# ordering start
for i, (itemNo, qty, name) in enumerate(self.order):
line = " ({:3}/{:<3}) {:2} of #{:<8} - {}".format(
i + 1, num_items, qty, itemNo, name)
print(line)
started = time.time()
driver.get(self.base_url + "/OrderByItemsDisplayViewBD")
#driver.find_element_by_id("headerOrderByItem").click()
itemNumber = driver.find_element_by_css_selector(
"input[name=itemNumber]")
itemNumber.clear()
itemNumber.send_keys(itemNo)
itemQuantity = driver.find_element_by_css_selector(
"input[name=itemQuantity]")
itemQuantity.clear()
itemQuantity.send_keys(qty)
driver.find_element_by_id("obiAddToCartFtr").click()
if self.is_element_present(By.CSS_SELECTOR, 'div.text-error'):
sys.stderr.write("#### Error adding {} {}\n".format(
qty, itemNo))
reason = self.driver.find_elements(
by=By.CSS_SELECTOR, value='div.text-error')[0].text
errors.append((line, reason))
print(" Took {:4}".format(time.time() - started))
def run(debug, ipdb, testfile, testname, skel, sources, symlinks):
if debug:
logging.basicConfig(level=logging.DEBUG)
log = logging.getLogger('nixtest')
log.debug("Called with: %r", locals())
if not testname:
testname = os.path.basename(testfile)
# XXX: hack to work around too long shebang line when run via nix-build
if os.getcwd().startswith('/tmp/'):
tempdir = os.getcwd()
else:
tempdir = tempfile.mkdtemp(prefix="nix-test-run.")
workdir = os.path.join(tempdir, 'workdir')
# Setup working directory for test
if skel:
shutil.copytree(skel, workdir)
else:
os.mkdir(workdir)
os.chmod(workdir, 0755)
# Change to working directory
with local.cwd(workdir):
for name, source in map(lambda x: x.split(':'), sources):
shutil.copytree(source, name)
make_umasked_writable(name)
# Create symlinks, among others for "profile"
for name, target in map(lambda x: x.split(':'), symlinks):
os.symlink(target, name)
# Setup profile as test environment using environment
# variables.
#
# `from plumbum.cmd import X` will produce commands local to
# that environment.
#
# probably we should rescue some variables
local.env.clear()
with local.env(**envvars("profile")):
log = log.getChild(testname)
testglobs = maketestglobs(local=local, log=log)
if ipdb:
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
log.info("ipdb running tests in: %s" % workdir)
execfile(testfile, testglobs)
else:
log.info("Running tests in: %s" % workdir)
execfile(testfile, testglobs)
def run(self):
ds = self.input().open()
cumulants = self._parse_cumulant_arg()
cumulants_s = ["C({},{})".format(c[0], c[1]) for c in cumulants]
plot_fn = length_scales.cumulant.vertical_profile.plot.plot
import ipdb
with ipdb.launch_ipdb_on_exception():
plot_fn(data=ds, cumulants=cumulants_s, plot_type=self.plot_type)
plt.savefig(self.output().path, bbox_inches='tight')
def click_run(path, config, scenario, load_demand, solve_demand, load_supply,
solve_supply, load_error, export_results, pickle_shapes,
save_models, log_name, api_run, debug, clear_results):
if debug:
import ipdb
with ipdb.launch_ipdb_on_exception():
run(path, config, scenario, load_demand, solve_demand, load_supply,
solve_supply, load_error, export_results, pickle_shapes,
save_models, log_name, api_run, clear_results)
else:
run(path, config, scenario, load_demand, solve_demand, load_supply,
solve_supply, load_error, export_results, pickle_shapes,
save_models, log_name, api_run, clear_results)
def run(self):
if options.pdb:
import ipdb
with ipdb.launch_ipdb_on_exception():
self._run()
elif options.doProfiling:
cProfile.runctx("self._run()",
globals=globals(),
locals=locals(),
filename=os.path.join(options.temporaryDirectory,
"profile-%s.out" % (self.name)))
else:
self._run()
def _raven_state_cb(self, msg):
if not self.is_recording:
return
if self.robot_frame is None:
self.robot_frame = msg.header.frame_id
with launch_ipdb_on_exception():
for arm in self.arms:
self.robot_msgs = self.robot_msgs+1
arm_msg = [arm_ for arm_ in msg.arms if arm_.name == arm][0]
pose = tfx.pose(arm_msg.tool.pose, header=msg.header)
self.robot_poses[arm].append((pose.stamp.seconds,pose.array))
joints = tuple(j.position for j in arm_msg.joints)
self.robot_joints[arm].append((pose.stamp.seconds,joints))
def run(self, test_classes):
self.start_application()
self.error_count = 0
try:
with app.test_request_context():
if self.fail_method == 'ipdb':
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
self._run(test_classes)
else:
self._run(test_classes)
except Exception:
traceback.print_exc()
raise SystemExit(2)
finally:
self.cleanup_browsers()
self.stop_application()
def start(self):
self._parseArgs()
self._setupLogging()
self.validateArgs()
if self.args.debug:
try:
import ipdb
except ImportError:
print "--debug requires module 'ipdb'"
return -1
with ipdb.launch_ipdb_on_exception():
self.run()
elif self.args.profile:
l = locals()
cProfile.runctx("_rv=self.run()", globals(), l, "profile.out")
pstats.Stats("profile.out").sort_stats("time").print_stats(20)
return l["_rv"]
else:
return self.run()
def _handle_PacketIn(self, event):
packet = event.parsed
if packet.type == ethernet.LLDP_TYPE:
self.handle_lldp(packet,event)
return
elif packet.type == 0x86dd: # IGNORE IPV6
return
if self.show_traces:
self.packetno += 1
print "-------- POX/OF RECV %d ---------------" % self.packetno
print event.connection
print event.ofp
print "port\t%s" % event.port
print "data\t%s" % packetlib.ethernet(event.data)
print "dpid\t%s" % event.dpid
print
recv_packet = self.packet_from_pox(event.dpid, event.ofp.in_port, event.data)
if self.debug_packet_in == "1":
ipdb.set_trace()
with ipdb.launch_ipdb_on_exception():
output = self.policy.eval(self.network, recv_packet)
if self.debug_packet_in == "drop" and not output:
ipdb.set_trace()
output = self.policy.eval(self.network, recv_packet) # So we can step through it
if self.show_traces:
print "<<<<<<<<< RECV <<<<<<<<<<<<<<<<<<<<<<<<<<"
print util.repr_plus([recv_packet], sep="\n\n")
print
print ">>>>>>>>> SEND >>>>>>>>>>>>>>>>>>>>>>>>>>"
print util.repr_plus(output.elements(), sep="\n\n")
print
for pkt in output.elements():
self.send_packet(pkt)
def handle(self, *args, **options):
# Setup the log level for root logger
loglevel = self.verbosity_loglevel.get(options["verbosity"])
logging.getLogger().setLevel(loglevel)
# from debugsqlshell
if options["debugsql"]:
from datetime import datetime
from django.db.backends import util
from debug_toolbar.utils import ms_from_timedelta, sqlparse
class PrintQueryWrapper(util.CursorDebugWrapper):
def execute(self, sql, params=()):
starttime = datetime.now()
try:
return self.cursor.execute(sql, params)
finally:
try:
raw_sql = self.db.ops.last_executed_query(self.cursor, sql, params)
execution_time = datetime.now() - starttime
print sqlparse.format(raw_sql, reindent=True),
print " [%.2fms]" % (ms_from_timedelta(execution_time),)
print
except UnicodeEncodeError:
print "UnicodeEncodeError"
util.CursorDebugWrapper = PrintQueryWrapper
# When debugging, launch ipdb on exception
if DEBUG_MIGRATIONS:
# Exception launches ipdb https://github.com/Psycojoker/ipdb#use
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
self._run_migrations(options["debugsql"], *args)
else:
# Just run the migrations
self._run_migrations(options["debugsql"], *args)
def spider(self):
import ipdb
url = None
with ipdb.launch_ipdb_on_exception():
try:
url = furl(redis.spop(FETCH_SET))
while url:
url = self.preprocess_url(url)
if not url or not str(url) or redis.sismember(SEEN_SET, str(url)):
# Already have this request stored (or don't want it)
log.debug('skipping: %s', url)
url = furl(redis.spop(FETCH_SET))
continue
response = self.request(url)
self.url_write(url, response)
redis.sadd(SEEN_SET, str(url))
try:
urls = set([str(x) for x in self.extract_links(response) if str(x)])
urls = [x for x in urls if not redis.sismember(SEEN_SET, x)]
if len(urls):
redis.sadd(FETCH_SET, *urls)
with open(self.filename_for(url, ext='urls'), 'w') as fh:
fh.write("\n".join(urls) + "\n")
except Exception as e:
log.error("Failed to parse URLs from %s: %s" % (url, e))
url = furl(redis.spop(FETCH_SET))
url = None
finally:
if url:
redis.sadd(FETCH_SET, str(url))
self.url_delete(url)
#!/usr/bin/env python
# -*- coding: utf-8 -*-
# Run the app
from ipdb import launch_ipdb_on_exception
from packagesample import start
with launch_ipdb_on_exception():
start.main()
def main(argv):
progname = 'bedup' if is_in_path('bedup') else 'python3 -m bedup'
io_enc = codecs.lookup(locale.getpreferredencoding()).name
if io_enc == 'ascii':
print(
'bedup will abort because Python was configured to use ASCII '
'for console I/O.\nSee https://git.io/vnzk6 which '
'explains how to use a UTF-8 locale.', file=sys.stderr)
return 1
parser = argparse.ArgumentParser(prog=progname)
parser.add_argument(
'--debug', action='store_true', help=argparse.SUPPRESS)
commands = parser.add_subparsers(dest='command', metavar='command')
sp_scan_vol = commands.add_parser(
'scan', help='Scan', description="""
Scans volumes to keep track of potentially duplicated files.""")
sp_scan_vol.set_defaults(action=vol_cmd)
scan_flags(sp_scan_vol)
# In Python 3.2+ we can add aliases here.
# Hidden aliases doesn't seem supported though.
sp_dedup_vol = commands.add_parser(
'dedup', help='Scan and deduplicate', description="""
Runs scan, then deduplicates identical files.""")
sp_dedup_vol.set_defaults(action=vol_cmd)
scan_flags(sp_dedup_vol)
sp_dedup_vol.add_argument(
'--defrag', action='store_true',
help='Defragment files that are going to be deduplicated')
# An alias so as not to break btrfs-time-machine.
# help='' is unset, which should make it (mostly) invisible.
sp_dedup_vol_compat = commands.add_parser(
'dedup-vol', description="""
A deprecated alias for the 'dedup' command.""")
sp_dedup_vol_compat.set_defaults(action=vol_cmd)
scan_flags(sp_dedup_vol_compat)
sp_reset_vol = commands.add_parser(
'reset', help='Reset tracking metadata', description="""
Reset tracking data for the listed volumes. Mostly useful for testing.""")
sp_reset_vol.set_defaults(action=vol_cmd)
vol_flags(sp_reset_vol)
sp_show_vols = commands.add_parser(
'show', help='Show metadata overview', description="""
Shows filesystems and volumes with their tracking status.""")
sp_show_vols.set_defaults(action=cmd_show_vols)
sp_show_vols.add_argument('fsuuid_or_device', nargs='?')
sp_show_vols.add_argument(
'--show-deleted', dest='show_deleted', action='store_true',
help='Show volumes that have been deleted')
sql_flags(sp_show_vols)
sp_find_new = commands.add_parser(
'find-new', help='List changed files', description="""
lists changes to volume since generation
This is a reimplementation of btrfs find-new,
modified to include directories as well.""")
sp_find_new.set_defaults(action=cmd_find_new)
sp_find_new.add_argument(
'-0|--zero-terminated', dest='zero_terminated', action='store_true',
help='Use a NUL character as the line separator')
sp_find_new.add_argument(
'--terse', dest='terse', action='store_true', help='Print names only')
sp_find_new.add_argument('volume', help='Volume to search')
sp_find_new.add_argument(
'generation', type=int, nargs='?', default=0,
help='Only show items modified at generation or a newer transaction')
sp_forget_fs = commands.add_parser(
'forget-fs', help='Wipe all metadata', description="""
Wipe all metadata for the listed filesystems.
Useful if the filesystems don't exist anymore.""")
sp_forget_fs.set_defaults(action=cmd_forget_fs)
sp_forget_fs.add_argument('uuid', nargs='+', help='Btrfs filesystem uuids')
sql_flags(sp_forget_fs)
sp_dedup_files = commands.add_parser(
'dedup-files', help='Deduplicate listed', description="""
Freezes listed files, checks them for being identical,
and projects the extents of the first file onto the other files.
The effects are visible with filefrag -v (apt:e2fsprogs),
which displays the extent map of files.
""".strip())
sp_dedup_files.set_defaults(action=cmd_dedup_files)
sp_dedup_files.add_argument('source', metavar='SRC', help='Source file')
sp_dedup_files.add_argument(
'dests', metavar='DEST', nargs='+', help='Dest files')
# Don't forget to also set new options in the dedup-vol test in vol_cmd
sp_dedup_files.add_argument(
'--defrag', action='store_true',
help='Defragment the source file first')
sp_generation = commands.add_parser(
'generation', help='Display volume generation', description="""
Display the btrfs generation of VOLUME.""")
sp_generation.set_defaults(action=cmd_generation)
sp_generation.add_argument('volume', help='Btrfs volume')
sp_generation.add_argument(
'--flush', action='store_true', dest='flush',
help='Flush outstanding data using syncfs before lookup')
sp_size_lookup = commands.add_parser(
'size-lookup', help='Look up inodes by size', description="""
List tracked inodes with a given size.""")
sp_size_lookup.set_defaults(action=cmd_size_lookup)
sp_size_lookup.add_argument('size', type=int)
sp_size_lookup.add_argument(
'-0|--zero-terminated', dest='zero_terminated', action='store_true',
help='Use a NUL character as the line separator')
sql_flags(sp_size_lookup)
sp_shell = commands.add_parser(
'shell', description="""
Run an interactive shell (useful for prototyping).""")
sp_shell.set_defaults(action=cmd_shell)
sql_flags(sp_shell)
sp_fake_updates = commands.add_parser(
'fake-updates', description="""
Fake inode updates from the latest dedup events (useful for benchmarking).""")
sp_fake_updates.set_defaults(action=cmd_fake_updates)
sp_fake_updates.add_argument('max_events', type=int)
sql_flags(sp_fake_updates)
# Give help when no subcommand is given
if not argv[1:]:
parser.print_help()
return
args = parser.parse_args(argv[1:])
if args.debug:
try:
from ipdb import launch_ipdb_on_exception
except ImportError:
sys.stderr.write(
'Please install bedup[interactive] for this feature\n')
return 1
with launch_ipdb_on_exception():
# Handle all warnings as errors.
# Overrides the default filter that ignores deprecations
# and prints the rest.
warnings.simplefilter('error')
warnings.filterwarnings('ignore', module='IPython\..*')
warnings.filterwarnings('ignore', module='alembic\..*')
return args.action(args)
else:
try:
return args.action(args)
except IOError as err:
if err.errno == errno.EPERM:
sys.stderr.write(
"You need to run this command as root.\n")
return 1
raise
def main(debug=False):
configure_logging()
args = None # to have args variable in except block when parse_args fails
try:
# Note: We parse the args here once to check whether to show bears or
# not.
args = default_arg_parser().parse_args()
if args.debug:
req_ipdb = PipRequirement('ipdb')
if not req_ipdb.is_installed():
logging.error('--debug flag requires ipdb. '
'You can install it with:\n%s',
' '.join(req_ipdb.install_command()))
sys.exit(13)
if debug or args.debug:
args.log_level = 'DEBUG'
# Defer imports so if e.g. --help is called they won't be run
from coalib.coala_modes import (
mode_format, mode_json, mode_non_interactive, mode_normal)
from coalib.output.ConsoleInteraction import (
show_bears, show_language_bears_capabilities)
console_printer = ConsolePrinter(print_colored=not args.no_color)
configure_logging(not args.no_color)
if args.show_bears:
from coalib.settings.ConfigurationGathering import get_all_bears
kwargs = {}
if args.bears:
kwargs['bear_globs'] = args.bears
filtered_bears = get_all_bears(**kwargs)
if args.filter_by_language:
logging.warning(
"'--filter-by-language ...' is deprecated. "
"Use '--filter-by language ...' instead.")
if args.filter_by is None:
args.filter_by = []
args.filter_by.append(['language'] + args.filter_by_language)
if args.filter_by:
# Each iteration of the following loop applies
# filters one by one provided as arguments
try:
args.filter_by = filter_vector_to_dict(args.filter_by)
filtered_bears = apply_filters(
args.filter_by, filtered_bears)
except (InvalidFilterException, NotImplementedError) as ex:
# If filter is not available or is unusable
console_printer.print(ex)
return 2
local_bears, global_bears = filtered_bears
show_bears(local_bears,
global_bears,
args.show_description or args.show_details,
args.show_details,
console_printer,
args)
return 0
elif args.show_capabilities:
from coalib.collecting.Collectors import (
filter_capabilities_by_languages)
local_bears, _ = apply_filter('language', args.show_capabilities)
capabilities = filter_capabilities_by_languages(
local_bears, args.show_capabilities)
show_language_bears_capabilities(capabilities, console_printer)
return 0
if args.json:
return mode_json(args, debug=debug)
except BaseException as exception: # pylint: disable=broad-except
if not isinstance(exception, SystemExit):
if args and args.debug:
import ipdb
with ipdb.launch_ipdb_on_exception():
raise
if debug:
raise
return get_exitcode(exception)
if args.format:
return mode_format(args, debug=debug)
if args.non_interactive:
return mode_non_interactive(console_printer, args, debug=debug)
return mode_normal(console_printer, None, args, debug=debug)
def main(self):
# This looks scary but it's not. Python uses reference
# counting and has a secondary, optional garbage collector for
# collecting garbage cycles. Unfortunately when a cyclic GC
# happens when a thread is calling cPickle.dumps, the
# interpreter crashes sometimes. See Bug 19704. Since we
# don't leak garbage cycles, disabling the cyclic GC is
# essentially harmless.
gc.disable()
random.seed(42)
if options.pdb or options.pdbAtStartup:
print("Process ID: %d" % os.getpid(), file=sys.stderr)
try:
import ipdb
except ImportError:
die("Debugging options require 'ipdb' package installed.")
if not options.threaded:
die("Debugging only works with -T (threaded) mode")
if options.pdbAtStartup:
ipdb.set_trace()
logging.info("ConsensusCore version: %s" %
(consensusCoreVersion() or "ConsensusCore unavailable"))
logging.info("ConsensusCore2 version: %s" %
(consensusCore2Version() or "ConsensusCore2 unavailable"))
logging.info("Starting.")
atexit.register(self._cleanup)
if options.doProfiling:
self._makeTemporaryDirectory()
with AlignmentSet(options.inputFilename) as peekFile:
if options.algorithm == "arrow" and peekFile.isCmpH5:
die("Arrow does not support CmpH5 files")
if not peekFile.isCmpH5 and not peekFile.hasPbi:
die("Genomic Consensus only works with cmp.h5 files and BAM "
"files with accompanying .pbi files")
logging.info("Peeking at file %s" % options.inputFilename)
logging.info("Input data: numAlnHits=%d" % len(peekFile))
resolveOptions(peekFile)
self._loadReference(peekFile)
self._checkFileCompatibility(peekFile)
self._algorithm = self._algorithmByName(options.algorithm, peekFile)
self._configureAlgorithm(options, peekFile)
options.disableHdf5ChunkCache = True
#options.disableHdf5ChunkCache = self._shouldDisableChunkCache(peekFile)
#if options.disableHdf5ChunkCache:
# logging.info("Will disable HDF5 chunk cache (large number of datasets)")
self._launchSlaves()
self._readAlignmentInput()
monitoringThread = threading.Thread(target=monitorSlaves, args=(self,))
monitoringThread.start()
try:
if options.doProfiling:
cProfile.runctx("self._mainLoop()",
globals=globals(),
locals=locals(),
filename=os.path.join(options.temporaryDirectory,
"profile-main.out"))
elif options.pdb:
with ipdb.launch_ipdb_on_exception():
self._mainLoop()
else:
self._mainLoop()
except BaseException as exc:
msg = 'options={}'.format(pprint.pformat(vars(options)))
logging.exception(msg)
self.abortWork(repr(exc))
monitoringThread.join()
if self._aborting:
logging.error("Aborting")
return -1
else:
logging.info("Finished.")
if options.doProfiling:
self._printProfiles()
# close h5 file.
self._inAlnFile.close()
return 0
def run(self, test_list=None, shared_data=None):
global _current_test_case
if not self.configured:
raise Exception("TestRunner was not configured before run() was called")
if test_list:
for test_name in test_list:
ok = False
for test_case in self.test_cases:
if test_case.__class__.__name__ == test_name:
ok = True
break
if not ok:
sys.stderr.write("The test case '%s' does not exist\n" % test_name)
self._shutdown()
return 1
sys.stderr.write("Only testing the following cases: %s\n" % ', '.join(test_list))
# Big try block to make sure we shut down the server if anything goes
# wrong.
failed = 0
browser = None
try:
# Do some stuff
browser = Remote(
self.selenium_server_url.encode('ascii'),
desired_capabilities = {
'browserName': self.selenium_browser,
},
)
browser.set_window_size(1024, 650)
if shared_data is None:
shared_data = dict()
for test_case in self.test_cases:
if test_list:
# Only run the named tests, plus those on the "critical path"
skip = True
if test_case.critical_path:
skip = False
elif test_list:
for test_name in test_list:
if test_name == test_case.__class__.__name__:
skip = False
if skip:
continue
test_case.browser = browser
test_case.selenium_browser = self.selenium_browser
test_case.test_runner = self
if self.selenium_browser == 'firefox':
test_case.slowdown = .5
test_case.shared = shared_data
test_case.banner()
_current_test_case = test_case
if self.wait_after_exception:
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
test_case.run()
else:
test_case.run()
test_case.done()
_current_test_case = None
failed += test_case.failed
except KeyboardInterrupt:
print "interrupt"
failed += 1
except:
failed += 1
traceback.print_exc()
if browser:
browser.quit()
self._shutdown()
return failed
def handle(self, *args, **options):
for exercice in Exercice.objects.all():
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
exercice.check_answers({})
for exercice in Exercice.objects.filter(testable_online=True):
with launch_ipdb_on_exception():
for number, (question, answers) in enumerate(exercice.get_questions().items()):
if answers["type"] == "text":
for answer in answers["answers"]:
assert exercice.check_answers({
str(number): answer
})["answers"][number]["correct"] == True
assert exercice.check_answers({
str(number): "this is not a valid answer"
})["answers"][number]["correct"] == False
elif answers["type"] == "checkbox":
number_of_checkboxs = len(answers["answers"])
true_false = (True, False)
# generate all number of possibilies matrice
bin_matrix = [(a, b, c, d, e, f, g) for a in true_false
for b in true_false
for c in true_false
for d in true_false
for e in true_false
for f in true_false
for g in true_false]
# reduce the number of possibilies to the number of checkbox
bin_matrix = [x[:number_of_checkboxs] for x in bin_matrix[:number_of_checkboxs]]
correct_answer = [str(n) for n, j in enumerate(answers["answers"].values()) if j]
for line in bin_matrix:
assert exercice.check_answers({
str(number): [str(n) for n, j in enumerate(line) if j]
})["answers"][number]["correct"] == (line == correct_answer)
# obviously broken answer
exercice.check_answers({
str(number): map(str, range(1500))
})
elif answers["type"] == "radio":
for radio_number, i in enumerate(answers["answers"].values()):
assert exercice.check_answers({
str(number): radio_number
})["answers"][number]["correct"] == i
assert exercice.check_answers({
str(number): "9999999"
})["answers"][number]["correct"] == False
elif answers["type"] == "graph":
pass
elif answers["type"] == "math-simple":
pass
elif answers["type"] == "math-advanced":
pass
else:
raise Exception("Exercice %s answers type is wrong: %s" % (exercice, answers.get("type")))
from ipdb import set_trace; set_trace()
class WritableFieldPatch(PatchSuite):
class Meta:
parent = rest_fields.WritableField #TODO tuple? if many places to patch
from_native = patch()
@patch(wrapper_type=wrappers.Hook, pass_event=True, event_class=FieldFromNativeEvent)
def field_from_native(self, data, files, field_name, into,
return_value, event):
event.published_context = ('log_prefix',)
event.__dict__.update({
'log_prefix': '-> ',
'field_value': into.get(field_name),
'field_name': field_name,
})
if __name__ == '__main__':
def do():
from rest_framework.test import APIClient
cl = APIClient()
cl.login(username='******', password='******')
resp = cl.post('/snippets/', {'title': 'titlu', 'code': 'codu'})
print (resp.data)
import ipdb
with ipdb.launch_ipdb_on_exception():
with (SerializerPatch() + WritableFieldPatch()):
do()
def inner(*args, **kwargs):
import ipdb
with ipdb.launch_ipdb_on_exception():
return func(*args, **kwargs)
def run_coala(console_printer=None,
log_printer=None,
print_results=do_nothing,
acquire_settings=fail_acquire_settings,
print_section_beginning=do_nothing,
nothing_done=do_nothing,
autoapply=True,
force_show_patch=False,
arg_parser=None,
arg_list=None,
args=None,
debug=False,
cache=None):
"""
This is a main method that should be usable for almost all purposes and
reduces executing coala to one function call.
:param console_printer: Object to print messages on the console.
:param log_printer: A LogPrinter object to use for logging.
:param print_results: A callback that takes a LogPrinter, a
section, a list of results to be printed,
the file dict and the mutable file diff
dict.
:param acquire_settings: The method to use for requesting settings.
It will get a parameter which is a
dictionary with the settings name as key
and a list containing a description in [0]
and the names of the bears who need this
setting in all following indexes.
:param print_section_beginning: A callback that will be called with a
section name string whenever analysis of a
new section is started.
:param nothing_done: A callback that will be called with only a
log printer that shall indicate that
nothing was done.
:param autoapply: Set this to false to not autoapply any
actions. If you set this to `False`,
`force_show_patch` will be ignored.
:param force_show_patch: If set to True, a patch will be always
shown. (Using ApplyPatchAction.)
:param arg_parser: Instance of ArgParser that is used to parse
non-setting arguments.
:param arg_list: The CLI argument list.
:param args: Alternative pre-parsed CLI arguments.
:param debug: Run in debug mode, bypassing
multiprocessing, and not catching any
exceptions.
:param cache: Instance of a FileCache instance.
:return: A dictionary containing a list of results
for all analyzed sections as key.
"""
all_actions_possible = provide_all_actions()
apply_single = None
if getattr(args, 'single_action', None) is not None:
while True:
for i, action in enumerate(all_actions_possible, 1):
console_printer.print(format_lines('{}'.format(
action), symbol='['))
line = format_lines(STR_ENTER_LETTER, symbol='[')
choice = input(line)
if choice.isalpha():
choice = choice.upper()
choice = '(' + choice + ')'
if choice == '(N)':
apply_single = 'Do (N)othing'
break
for i, action in enumerate(all_actions_possible, 1):
if choice in action:
apply_single = action
break
if apply_single:
break
console_printer.print(format_lines(
'Please enter a valid letter.',
symbol='['))
args.apply_patch = False
exitcode = 0
sections = {}
results = {}
file_dicts = {}
try:
yielded_results = yielded_unfixed_results = False
did_nothing = True
sections, local_bears, global_bears, targets = gather_configuration(
acquire_settings,
arg_parser=arg_parser,
arg_list=arg_list,
args=args)
logging.debug('Platform {} -- Python {}, coalib {}'
.format(platform.system(), platform.python_version(),
VERSION))
settings_hash = get_settings_hash(sections, targets)
flush_cache = bool(sections['cli'].get('flush_cache', False) or
settings_changed(None, settings_hash))
if cache is None and not sections['cli'].get('disable_caching', False):
cache = FileDictFileCache(None, os.getcwd(), flush_cache)
if targets:
sections = OrderedDict(
(section_name, sections[section_name])
for section_name in targets)
# Collect all the filters and try to filter sections
filters = collect_filters(args, arg_list, arg_parser)
if len(filters) > 0:
all_sections = list(sections.values())
try:
filtered = apply_filters(filters, sections=all_sections)
sections = OrderedDict(
(sect.name.lower(), sect) for sect in filtered)
except (InvalidFilterException, NotImplementedError) as ex:
console_printer.print(ex)
for section_name, section in sections.items():
if not section.is_enabled(targets):
continue
if not autoapply:
section['default_actions'] = ''
elif force_show_patch:
section['default_actions'] = '*: ShowPatchAction'
section['show_result_on_top'] = 'yeah'
print_section_beginning(section)
section_result = execute_section(
section=section,
global_bear_list=global_bears[section_name],
local_bear_list=local_bears[section_name],
print_results=print_results,
cache=cache,
log_printer=None,
console_printer=console_printer,
debug=debug or args and args.debug,
apply_single=(apply_single
if apply_single is not None else
False))
yielded, yielded_unfixed, results[section_name] = (
simplify_section_result(section_result))
yielded_results = yielded_results or yielded
yielded_unfixed_results = (
yielded_unfixed_results or yielded_unfixed)
did_nothing = False
file_dicts[section_name] = section_result[3]
update_settings_db(None, settings_hash)
if cache:
cache.write()
if CounterHandler.get_num_calls_for_level('ERROR') > 0:
exitcode = 1
elif did_nothing:
nothing_done(None)
exitcode = 2
elif yielded_unfixed_results:
exitcode = 1
elif yielded_results:
exitcode = 5
except BaseException as exception: # pylint: disable=broad-except
if not isinstance(exception, SystemExit):
if args and args.debug or (
sections and sections.get('cli', {}).get('debug', False)
):
import ipdb
with ipdb.launch_ipdb_on_exception():
raise
if debug:
raise
exitcode = exitcode or get_exitcode(exception)
return results, exitcode, file_dicts
def main(self):
# This looks scary but it's not. Python uses reference
# counting and has a secondary, optional garbage collector for
# collecting garbage cycles. Unfortunately when a cyclic GC
# happens when a thread is calling cPickle.dumps, the
# interpreter crashes sometimes. See Bug 19704. Since we
# don't leak garbage cycles, disabling the cyclic GC is
# essentially harmless.
gc.disable()
parseOptions()
self._algorithm = self._algorithmByName(options.algorithm)
self._setupLogging()
random.seed(42)
logging.info("h5py version: %s" % h5py.version.version)
logging.info("hdf5 version: %s" % h5py.version.hdf5_version)
logging.info("ConsensusCore version: %s" %
(consensusCoreVersion() or "ConsensusCore unavailable"))
logging.info("Starting.")
atexit.register(self._cleanup)
if options.doProfiling:
self._makeTemporaryDirectory()
with AlignmentSet(options.inputFilename) as peekFile:
if not peekFile.isCmpH5 and not peekFile.hasPbi:
logging.warn("'fancyChunking' not yet available for BAM "
"files without accompanying .pbi files, "
"disabling")
options.fancyChunking = False
logging.info("Peeking at file %s" % options.inputFilename)
logging.info("Input data: numAlnHits=%d" % len(peekFile))
resolveOptions(peekFile)
self._loadReference(peekFile)
self._checkFileCompatibility(peekFile)
self._configureAlgorithm(options, peekFile)
options.disableHdf5ChunkCache = True
#options.disableHdf5ChunkCache = self._shouldDisableChunkCache(peekFile)
#if options.disableHdf5ChunkCache:
# logging.info("Will disable HDF5 chunk cache (large number of datasets)")
#logging.debug("After peek, # hdf5 objects open: %d" % h5py.h5f.get_obj_count())
if options.dumpEvidence:
self._setupEvidenceDumpDirectory(options.evidenceDirectory)
self._launchSlaves()
self._readCmpH5Input()
monitoringThread = threading.Thread(target=monitorSlaves, args=(self,))
monitoringThread.start()
try:
if options.doProfiling:
cProfile.runctx("self._mainLoop()",
globals=globals(),
locals=locals(),
filename=os.path.join(options.temporaryDirectory,
"profile-main.out"))
elif options.doDebugging:
if not options.threaded:
die("Debugging only works with -T (threaded) mode")
logging.info("PID: %d", os.getpid())
import ipdb
with ipdb.launch_ipdb_on_exception():
self._mainLoop()
else:
self._mainLoop()
except:
why = traceback.format_exc()
self.abortWork(why)
monitoringThread.join()
if self._aborting:
logging.error("Aborting")
return -1
else:
logging.info("Finished.")
if options.doProfiling:
self._printProfiles()
# close h5 file.
self._inCmpH5.close()
return 0
def help_on_exceptions(logger, func, *args, **kw):
"""Present exceptions in the form of a request to file an issue
Calls func (typically a "main" function), and returns the return code.
If an exception occurs, then a) if an error is logged to `logger`,
we just return with 127, or b) otherwise, dump the stack trace and
then return 127.
If the 'DEBUG' environment variable is set then the exception is
raised anyway.
"""
debug = os.environ.get('DEBUG', '')
if '--ipdb' in sys.argv:
from ipdb import launch_ipdb_on_exception
with launch_ipdb_on_exception():
return func(*args, **kw)
try:
return func(*args, **kw)
except KeyboardInterrupt:
if debug:
raise
else:
logger.info('Interrupted')
return 127
except SystemExit:
raise
except ValidationError as e:
if debug:
raise
else:
logger.error(str(e))
return 127
except IOError as e:
if debug:
raise
else:
logger.error(str(e))
return 127
except RemoteFetchError as e:
if debug:
raise
else:
logger.error("You may wish to check your Internet connection or the remote server")
return 127
except:
if debug:
raise
else:
if not logger.error_occurred:
logger.error("Uncaught exception:")
for line in traceback.format_exc().splitlines():
logger.info(line)
text = """\
This exception has not been translated to a human-friendly error
message, please file an issue at
https://github.com/hashdist/hashdist/issues pasting this
stack trace.
"""
text = textwrap.fill(textwrap.dedent(text), width=78)
logger.info('')
for line in text.splitlines():
logger.info(line)
return 127