def test_get_ontology(self):
ontology_source = ols.get_ols_ontology('efo')
self.assertIsInstance(ontology_source, OntologySource)
self.assertEqual(ontology_source.name, 'efo')
self.assertEqual(ontology_source.file,
'http://www.ebi.ac.uk/ols/api/ontologies/efo')
self.assertIsInstance(ontology_source.version, str)
self.assertEqual(ontology_source.description,
'Experimental Factor Ontology')
def test_search_for_term(self):
ontology_source = ols.get_ols_ontology('efo')
ontology_annotations = ols.search_ols('cell type', ontology_source)
self.assertIsInstance(ontology_annotations, list)
self.assertGreater(len(ontology_annotations), 0)
ontology_anotations = [oa for oa in ontology_annotations if
oa.term == 'cell type']
self.assertIsInstance(ontology_anotations[-1], OntologyAnnotation)
self.assertEqual(ontology_anotations[-1].term, 'cell type')
self.assertIn('http://www.ebi.ac.uk/efo/EFO_0000324',
[oa.term_accession for oa in ontology_anotations])
self.assertEqual(ontology_anotations[-1].term_source, ontology_source)