def runCoregGeom(self):
'''compute geometric offset
'''
catalog = isceobj.Catalog.createCatalog(self._insar.procDoc.name)
self.updateParamemetersFromUser()
masterTrack = self._insar.loadTrack(master=True)
slaveTrack = self._insar.loadTrack(master=False)
demFile = os.path.abspath(self._insar.dem)
wbdFile = os.path.abspath(self._insar.wbd)
###############################################################################
for i, frameNumber in enumerate(self._insar.masterFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
os.chdir(frameDir)
for j, swathNumber in enumerate(
range(self._insar.startingSwath, self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
os.chdir(swathDir)
print('processing frame {}, swath {}'.format(
frameNumber, swathNumber))
masterSwath = masterTrack.frames[i].swaths[j]
slaveSwath = slaveTrack.frames[i].swaths[j]
##################################################
# compute geometric offsets
##################################################
#set up track parameters just for computing offsets
#ALL track parameters are listed here
#master
#masterTrack.passDirection =
#masterTrack.pointingDirection =
#masterTrack.operationMode =
#masterTrack.radarWavelength =
masterTrack.numberOfSamples = masterSwath.numberOfSamples
masterTrack.numberOfLines = masterSwath.numberOfLines
masterTrack.startingRange = masterSwath.startingRange
#masterTrack.rangeSamplingRate =
masterTrack.rangePixelSize = masterSwath.rangePixelSize
masterTrack.sensingStart = masterSwath.sensingStart
#masterTrack.prf =
#masterTrack.azimuthPixelSize =
masterTrack.azimuthLineInterval = masterSwath.azimuthLineInterval
#masterTrack.dopplerVsPixel =
#masterTrack.frames =
#masterTrack.orbit =
#slave
slaveTrack.numberOfSamples = slaveSwath.numberOfSamples
slaveTrack.numberOfLines = slaveSwath.numberOfLines
slaveTrack.startingRange = slaveSwath.startingRange
slaveTrack.rangePixelSize = slaveSwath.rangePixelSize
slaveTrack.sensingStart = slaveSwath.sensingStart
slaveTrack.azimuthLineInterval = slaveSwath.azimuthLineInterval
if self.useGPU and self._insar.hasGPU():
topoGPU(masterTrack, 1, 1, demFile, self._insar.latitude,
self._insar.longitude, self._insar.height,
self._insar.los)
geo2RdrGPU(slaveTrack, 1, 1, self._insar.latitude,
self._insar.longitude, self._insar.height,
self._insar.rangeOffset, self._insar.azimuthOffset)
else:
topoCPU(masterTrack, 1, 1, demFile, self._insar.latitude,
self._insar.longitude, self._insar.height,
self._insar.los)
geo2RdrCPU(slaveTrack, 1, 1, self._insar.latitude,
self._insar.longitude, self._insar.height,
self._insar.rangeOffset, self._insar.azimuthOffset)
waterBodyRadar(self._insar.latitude, self._insar.longitude,
wbdFile, self._insar.wbdOut)
#clear up, leaving only range/azimuth offsets
os.remove(self._insar.latitude)
os.remove(self._insar.latitude + '.vrt')
os.remove(self._insar.latitude + '.xml')
os.remove(self._insar.longitude)
os.remove(self._insar.longitude + '.vrt')
os.remove(self._insar.longitude + '.xml')
os.remove(self._insar.height)
os.remove(self._insar.height + '.vrt')
os.remove(self._insar.height + '.xml')
os.remove(self._insar.los)
os.remove(self._insar.los + '.vrt')
os.remove(self._insar.los + '.xml')
##################################################
# resample bursts
##################################################
slaveBurstResampledDir = self._insar.slaveBurstPrefix + '_1_coreg_geom'
#interferogramDir = self._insar.masterBurstPrefix + '-' + self._insar.slaveBurstPrefix + '_coreg_geom'
interferogramDir = 'burst_interf_1_coreg_geom'
interferogramPrefix = self._insar.masterBurstPrefix + '-' + self._insar.slaveBurstPrefix
resampleBursts(masterSwath,
slaveSwath,
self._insar.masterBurstPrefix,
self._insar.slaveBurstPrefix,
slaveBurstResampledDir,
interferogramDir,
self._insar.masterBurstPrefix,
self._insar.slaveBurstPrefix,
self._insar.slaveBurstPrefix,
interferogramPrefix,
self._insar.rangeOffset,
self._insar.azimuthOffset,
rangeOffsetResidual=0,
azimuthOffsetResidual=0)
##################################################
# mosaic burst amplitudes and interferograms
##################################################
os.chdir(slaveBurstResampledDir)
mosaicBurstAmplitude(masterSwath,
self._insar.slaveBurstPrefix,
self._insar.slaveMagnitude,
numberOfLooksThreshold=4)
os.chdir('../')
#the interferogram is not good enough, do not mosaic
mosaic = False
if mosaic:
os.chdir(interferogramDir)
mosaicBurstInterferogram(masterSwath,
interferogramPrefix,
self._insar.interferogram,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir('../')
os.chdir('../')
###############################################################################
catalog.printToLog(logger, "runCoregGeom")
self._insar.procDoc.addAllFromCatalog(catalog)
def runCoregCc(self):
'''coregister bursts by cross correlation
'''
catalog = isceobj.Catalog.createCatalog(self._insar.procDoc.name)
self.updateParamemetersFromUser()
masterTrack = self._insar.loadTrack(master=True)
slaveTrack = self._insar.loadTrack(master=False)
#demFile = os.path.abspath(self._insar.dem)
#wbdFile = os.path.abspath(self._insar.wbd)
###############################################################################
self._insar.rangeResidualOffsetCc = [
[] for i in range(len(masterTrack.frames))
]
self._insar.azimuthResidualOffsetCc = [
[] for i in range(len(masterTrack.frames))
]
for i, frameNumber in enumerate(self._insar.masterFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
os.chdir(frameDir)
for j, swathNumber in enumerate(
range(self._insar.startingSwath, self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
os.chdir(swathDir)
print('processing frame {}, swath {}'.format(
frameNumber, swathNumber))
masterSwath = masterTrack.frames[i].swaths[j]
slaveSwath = slaveTrack.frames[i].swaths[j]
##################################################
# estimate cross-correlation offsets
##################################################
#compute number of offsets to use
wbdImg = isceobj.createImage()
wbdImg.load(self._insar.wbdOut + '.xml')
width = wbdImg.width
length = wbdImg.length
#initial number of offsets to use
numberOfOffsets = 800
#compute land ratio to further determine the number of offsets to use
if self.useWbdForNumberOffsets:
wbd = np.memmap(self._insar.wbdOut,
dtype='byte',
mode='r',
shape=(length, width))
landRatio = np.sum(wbd == 0) / length / width
del wbd
if (landRatio <= 0.00125):
print(
'\n\nWARNING: land area too small for estimating offsets between master and slave magnitudes at frame {}, swath {}'
.format(frameNumber, swathNumber))
print('set offsets to zero\n\n')
self._insar.rangeResidualOffsetCc[i].append(0.0)
self._insar.azimuthResidualOffsetCc[i].append(0.0)
catalog.addItem(
'warning message',
'land area too small for estimating offsets between master and slave magnitudes at frame {}, swath {}'
.format(frameNumber, swathNumber), 'runCoregCc')
continue
#total number of offsets to use
numberOfOffsets /= landRatio
#allocate number of offsets in range/azimuth according to image width/length
#number of offsets to use in range/azimuth
numberOfOffsetsRange = int(
np.sqrt(numberOfOffsets * width / length))
numberOfOffsetsAzimuth = int(
length / width * np.sqrt(numberOfOffsets * width / length))
#this should be better?
numberOfOffsetsRange = int(np.sqrt(numberOfOffsets))
numberOfOffsetsAzimuth = int(np.sqrt(numberOfOffsets))
if numberOfOffsetsRange > int(width / 2):
numberOfOffsetsRange = int(width / 2)
if numberOfOffsetsAzimuth > int(length / 2):
numberOfOffsetsAzimuth = int(length / 2)
if numberOfOffsetsRange < 10:
numberOfOffsetsRange = 10
if numberOfOffsetsAzimuth < 10:
numberOfOffsetsAzimuth = 10
#user's settings
if self.numberRangeOffsets != None:
numberOfOffsetsRange = self.numberRangeOffsets[i][j]
if self.numberAzimuthOffsets != None:
numberOfOffsetsAzimuth = self.numberAzimuthOffsets[i][j]
catalog.addItem(
'number of range offsets at frame {}, swath {}'.format(
frameNumber, swathNumber),
'{}'.format(numberOfOffsetsRange), 'runCoregCc')
catalog.addItem(
'number of azimuth offsets at frame {}, swath {}'.format(
frameNumber, swathNumber),
'{}'.format(numberOfOffsetsAzimuth), 'runCoregCc')
#need to cp to current directory to make it (gdal) work
if not os.path.isfile(self._insar.masterMagnitude):
os.symlink(
os.path.join(self._insar.masterBurstPrefix,
self._insar.masterMagnitude),
self._insar.masterMagnitude)
#shutil.copy2() can overwrite
shutil.copy2(
os.path.join(self._insar.masterBurstPrefix,
self._insar.masterMagnitude + '.vrt'),
self._insar.masterMagnitude + '.vrt')
shutil.copy2(
os.path.join(self._insar.masterBurstPrefix,
self._insar.masterMagnitude + '.xml'),
self._insar.masterMagnitude + '.xml')
if not os.path.isfile(self._insar.slaveMagnitude):
os.symlink(
os.path.join(
self._insar.slaveBurstPrefix + '_1_coreg_geom',
self._insar.slaveMagnitude),
self._insar.slaveMagnitude)
#shutil.copy2() can overwrite
shutil.copy2(
os.path.join(self._insar.slaveBurstPrefix + '_1_coreg_geom',
self._insar.slaveMagnitude + '.vrt'),
self._insar.slaveMagnitude + '.vrt')
shutil.copy2(
os.path.join(self._insar.slaveBurstPrefix + '_1_coreg_geom',
self._insar.slaveMagnitude + '.xml'),
self._insar.slaveMagnitude + '.xml')
#matching
ampcor = Ampcor(name='insarapp_slcs_ampcor')
ampcor.configure()
mMag = isceobj.createImage()
mMag.load(self._insar.masterMagnitude + '.xml')
mMag.setAccessMode('read')
mMag.createImage()
sMag = isceobj.createImage()
sMag.load(self._insar.slaveMagnitude + '.xml')
sMag.setAccessMode('read')
sMag.createImage()
ampcor.setImageDataType1('real')
ampcor.setImageDataType2('real')
ampcor.setMasterSlcImage(mMag)
ampcor.setSlaveSlcImage(sMag)
#MATCH REGION
rgoff = 0
azoff = 0
#it seems that we cannot use 0, haven't look into the problem
if rgoff == 0:
rgoff = 1
if azoff == 0:
azoff = 1
firstSample = 1
if rgoff < 0:
firstSample = int(35 - rgoff)
firstLine = 1
if azoff < 0:
firstLine = int(35 - azoff)
ampcor.setAcrossGrossOffset(rgoff)
ampcor.setDownGrossOffset(azoff)
ampcor.setFirstSampleAcross(firstSample)
ampcor.setLastSampleAcross(mMag.width)
ampcor.setNumberLocationAcross(numberOfOffsetsRange)
ampcor.setFirstSampleDown(firstLine)
ampcor.setLastSampleDown(mMag.length)
ampcor.setNumberLocationDown(numberOfOffsetsAzimuth)
#MATCH PARAMETERS
ampcor.setWindowSizeWidth(64)
ampcor.setWindowSizeHeight(64)
#note this is the half width/length of search area, so number of resulting correlation samples: 8*2+1
ampcor.setSearchWindowSizeWidth(8)
ampcor.setSearchWindowSizeHeight(8)
#REST OF THE STUFF
ampcor.setAcrossLooks(1)
ampcor.setDownLooks(1)
ampcor.setOversamplingFactor(64)
ampcor.setZoomWindowSize(16)
#1. The following not set
#Matching Scale for Sample/Line Directions (-) = 1. 1.
#should add the following in Ampcor.py?
#if not set, in this case, Ampcor.py'value is also 1. 1.
#ampcor.setScaleFactorX(1.)
#ampcor.setScaleFactorY(1.)
#MATCH THRESHOLDS AND DEBUG DATA
#2. The following not set
#in roi_pac the value is set to 0 1
#in isce the value is set to 0.001 1000.0
#SNR and Covariance Thresholds (-) = {s1} {s2}
#should add the following in Ampcor?
#THIS SHOULD BE THE ONLY THING THAT IS DIFFERENT FROM THAT OF ROI_PAC
#ampcor.setThresholdSNR(0)
#ampcor.setThresholdCov(1)
ampcor.setDebugFlag(False)
ampcor.setDisplayFlag(False)
#in summary, only two things not set which are indicated by 'The following not set' above.
#run ampcor
ampcor.ampcor()
offsets = ampcor.getOffsetField()
refinedOffsets = cullOffsetsRoipac(offsets, numThreshold=50)
#finalize image, and re-create it
#otherwise the file pointer is still at the end of the image
mMag.finalizeImage()
sMag.finalizeImage()
#clear up
os.remove(self._insar.masterMagnitude)
os.remove(self._insar.masterMagnitude + '.vrt')
os.remove(self._insar.masterMagnitude + '.xml')
os.remove(self._insar.slaveMagnitude)
os.remove(self._insar.slaveMagnitude + '.vrt')
os.remove(self._insar.slaveMagnitude + '.xml')
#compute average offsets to use in resampling
if refinedOffsets == None:
rangeOffset = 0
azimuthOffset = 0
self._insar.rangeResidualOffsetCc[i].append(rangeOffset)
self._insar.azimuthResidualOffsetCc[i].append(azimuthOffset)
print(
'\n\nWARNING: too few offsets left in matching master and slave magnitudes at frame {}, swath {}'
.format(frameNumber, swathNumber))
print('set offsets to zero\n\n')
catalog.addItem(
'warning message',
'too few offsets left in matching master and slave magnitudes at frame {}, swath {}'
.format(frameNumber, swathNumber), 'runCoregCc')
else:
rangeOffset, azimuthOffset = meanOffset(refinedOffsets)
#for range offset, need to compute from a polynomial
#see components/isceobj/Location/Offset.py and components/isceobj/Util/Library/python/Poly2D.py for definations
(azimuthPoly,
rangePoly) = refinedOffsets.getFitPolynomials(rangeOrder=2,
azimuthOrder=2)
#make a deep copy, otherwise it also changes original coefficient list of rangePoly, which affects following rangePoly(*, *) computation
polyCoeff = copy.deepcopy(rangePoly.getCoeffs())
rgIndex = (np.arange(width) - rangePoly.getMeanRange()
) / rangePoly.getNormRange()
azIndex = (np.arange(length) - rangePoly.getMeanAzimuth()
) / rangePoly.getNormAzimuth()
rangeOffset = polyCoeff[0][0] + polyCoeff[0][1]*rgIndex[None,:] + polyCoeff[0][2]*rgIndex[None,:]**2 + \
(polyCoeff[1][0] + polyCoeff[1][1]*rgIndex[None,:]) * azIndex[:, None] + \
polyCoeff[2][0] * azIndex[:, None]**2
polyCoeff.append([
rangePoly.getMeanRange(),
rangePoly.getNormRange(),
rangePoly.getMeanAzimuth(),
rangePoly.getNormAzimuth()
])
self._insar.rangeResidualOffsetCc[i].append(polyCoeff)
self._insar.azimuthResidualOffsetCc[i].append(azimuthOffset)
catalog.addItem(
'range residual offset at {} {} at frame {}, swath {}'.
format(0, 0, frameNumber, swathNumber),
'{}'.format(rangePoly(0, 0)), 'runCoregCc')
catalog.addItem(
'range residual offset at {} {} at frame {}, swath {}'.
format(0, width - 1, frameNumber, swathNumber),
'{}'.format(rangePoly(0, width - 1)), 'runCoregCc')
catalog.addItem(
'range residual offset at {} {} at frame {}, swath {}'.
format(length - 1, 0, frameNumber, swathNumber),
'{}'.format(rangePoly(length - 1, 0)), 'runCoregCc')
catalog.addItem(
'range residual offset at {} {} at frame {}, swath {}'.
format(length - 1, width - 1, frameNumber, swathNumber),
'{}'.format(rangePoly(length - 1,
width - 1)), 'runCoregCc')
catalog.addItem(
'azimuth residual offset at frame {}, swath {}'.format(
frameNumber, swathNumber), '{}'.format(azimuthOffset),
'runCoregCc')
DEBUG = False
if DEBUG:
print('+++++++++++++++++++++++++++++')
print(rangeOffset[0, 0], rangePoly(0, 0))
print(rangeOffset[0, width - 1], rangePoly(0, width - 1))
print(rangeOffset[length - 1, 0], rangePoly(length - 1, 0))
print(rangeOffset[length - 1, width - 1],
rangePoly(length - 1, width - 1))
print(
rangeOffset[int((length - 1) / 2),
int((width - 1) / 2)],
rangePoly(int((length - 1) / 2), int((width - 1) / 2)))
print('+++++++++++++++++++++++++++++')
##################################################
# resample bursts
##################################################
slaveBurstResampledDir = self._insar.slaveBurstPrefix + '_2_coreg_cc'
#interferogramDir = self._insar.masterBurstPrefix + '-' + self._insar.slaveBurstPrefix + '_coreg_geom'
interferogramDir = 'burst_interf_2_coreg_cc'
interferogramPrefix = self._insar.masterBurstPrefix + '-' + self._insar.slaveBurstPrefix
resampleBursts(masterSwath,
slaveSwath,
self._insar.masterBurstPrefix,
self._insar.slaveBurstPrefix,
slaveBurstResampledDir,
interferogramDir,
self._insar.masterBurstPrefix,
self._insar.slaveBurstPrefix,
self._insar.slaveBurstPrefix,
interferogramPrefix,
self._insar.rangeOffset,
self._insar.azimuthOffset,
rangeOffsetResidual=rangeOffset,
azimuthOffsetResidual=azimuthOffset)
##################################################
# mosaic burst amplitudes and interferograms
##################################################
os.chdir(slaveBurstResampledDir)
mosaicBurstAmplitude(masterSwath,
self._insar.slaveBurstPrefix,
self._insar.slaveMagnitude,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir(interferogramDir)
mosaicBurstInterferogram(masterSwath,
interferogramPrefix,
self._insar.interferogram,
numberOfLooksThreshold=4)
os.chdir('../')
##################################################
# final amplitude and interferogram
##################################################
amp = np.zeros(
(masterSwath.numberOfLines, 2 * masterSwath.numberOfSamples),
dtype=np.float32)
amp[0:, 1:masterSwath.numberOfSamples*2:2] = np.fromfile(os.path.join(slaveBurstResampledDir, self._insar.slaveMagnitude), \
dtype=np.float32).reshape(masterSwath.numberOfLines, masterSwath.numberOfSamples)
amp[0:, 0:masterSwath.numberOfSamples*2:2] = np.fromfile(os.path.join(self._insar.masterBurstPrefix, self._insar.masterMagnitude), \
dtype=np.float32).reshape(masterSwath.numberOfLines, masterSwath.numberOfSamples)
amp.astype(np.float32).tofile(self._insar.amplitude)
create_xml(self._insar.amplitude, masterSwath.numberOfSamples,
masterSwath.numberOfLines, 'amp')
os.rename(
os.path.join(interferogramDir, self._insar.interferogram),
self._insar.interferogram)
os.rename(
os.path.join(interferogramDir,
self._insar.interferogram + '.vrt'),
self._insar.interferogram + '.vrt')
os.rename(
os.path.join(interferogramDir,
self._insar.interferogram + '.xml'),
self._insar.interferogram + '.xml')
os.chdir('../')
os.chdir('../')
###############################################################################
catalog.printToLog(logger, "runCoregCc")
self._insar.procDoc.addAllFromCatalog(catalog)
def runIonSubband(self):
'''create subband interferograms
'''
catalog = isceobj.Catalog.createCatalog(self._insar.procDoc.name)
self.updateParamemetersFromUser()
if not self.doIon:
catalog.printToLog(logger, "runIonSubband")
self._insar.procDoc.addAllFromCatalog(catalog)
return
referenceTrack = self._insar.loadTrack(reference=True)
secondaryTrack = self._insar.loadTrack(reference=False)
#using 1/3, 1/3, 1/3 band split
radarWavelength = referenceTrack.radarWavelength
rangeBandwidth = referenceTrack.frames[0].swaths[0].rangeBandwidth
rangeSamplingRate = referenceTrack.frames[0].swaths[0].rangeSamplingRate
radarWavelengthLower = SPEED_OF_LIGHT / (SPEED_OF_LIGHT / radarWavelength -
rangeBandwidth / 3.0)
radarWavelengthUpper = SPEED_OF_LIGHT / (SPEED_OF_LIGHT / radarWavelength +
rangeBandwidth / 3.0)
subbandRadarWavelength = [radarWavelengthLower, radarWavelengthUpper]
subbandBandWidth = [
rangeBandwidth / 3.0 / rangeSamplingRate,
rangeBandwidth / 3.0 / rangeSamplingRate
]
subbandFrequencyCenter = [
-rangeBandwidth / 3.0 / rangeSamplingRate,
rangeBandwidth / 3.0 / rangeSamplingRate
]
subbandPrefix = ['lower', 'upper']
'''
ionDir = {
ionDir['swathMosaic'] : 'mosaic',
ionDir['insar'] : 'insar',
ionDir['ion'] : 'ion',
ionDir['subband'] : ['lower', 'upper'],
ionDir['ionCal'] : 'ion_cal'
}
'''
#define upper level directory names
ionDir = defineIonDir()
self._insar.subbandRadarWavelength = subbandRadarWavelength
############################################################
# STEP 1. create directories
############################################################
#create and enter 'ion' directory
#after finishing each step, we are in this directory
os.makedirs(ionDir['ion'], exist_ok=True)
os.chdir(ionDir['ion'])
#create insar processing directories
for k in range(2):
subbandDir = ionDir['subband'][k]
for i, frameNumber in enumerate(self._insar.referenceFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
for j, swathNumber in enumerate(
range(self._insar.startingSwath,
self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
fullDir = os.path.join(subbandDir, frameDir, swathDir)
os.makedirs(fullDir, exist_ok=True)
#create ionospheric phase directory
os.makedirs(ionDir['ionCal'])
############################################################
# STEP 2. create subband interferograms
############################################################
import shutil
import numpy as np
from contrib.alos2proc.alos2proc import rg_filter
from isceobj.Alos2Proc.Alos2ProcPublic import resampleBursts
from isceobj.Alos2Proc.Alos2ProcPublic import mosaicBurstAmplitude
from isceobj.Alos2Proc.Alos2ProcPublic import mosaicBurstInterferogram
from isceobj.Alos2Proc.Alos2ProcPublic import create_xml
for i, frameNumber in enumerate(self._insar.referenceFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
for j, swathNumber in enumerate(
range(self._insar.startingSwath, self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
#filter reference and secondary images
for burstPrefix, swath in zip([
self._insar.referenceBurstPrefix,
self._insar.secondaryBurstPrefix
], [
referenceTrack.frames[i].swaths[j],
secondaryTrack.frames[i].swaths[j]
]):
slcDir = os.path.join('../', frameDir, swathDir, burstPrefix)
slcLowerDir = os.path.join(ionDir['subband'][0], frameDir,
swathDir, burstPrefix)
slcUpperDir = os.path.join(ionDir['subband'][1], frameDir,
swathDir, burstPrefix)
os.makedirs(slcLowerDir, exist_ok=True)
os.makedirs(slcUpperDir, exist_ok=True)
for k in range(swath.numberOfBursts):
print('processing burst: %02d' % (k + 1))
slc = os.path.join(slcDir,
burstPrefix + '_%02d.slc' % (k + 1))
slcLower = os.path.join(
slcLowerDir, burstPrefix + '_%02d.slc' % (k + 1))
slcUpper = os.path.join(
slcUpperDir, burstPrefix + '_%02d.slc' % (k + 1))
rg_filter(slc, 2, [slcLower, slcUpper], subbandBandWidth,
subbandFrequencyCenter, 257, 2048, 0.1, 0, 0.0)
#resample
for l in range(2):
os.chdir(os.path.join(ionDir['subband'][l], frameDir,
swathDir))
#recreate xml file to remove the file path
#can also use fixImageXml.py?
for burstPrefix, swath in zip([
self._insar.referenceBurstPrefix,
self._insar.secondaryBurstPrefix
], [
referenceTrack.frames[i].swaths[j],
secondaryTrack.frames[i].swaths[j]
]):
os.chdir(burstPrefix)
for k in range(swath.numberOfBursts):
slc = burstPrefix + '_%02d.slc' % (k + 1)
img = isceobj.createSlcImage()
img.load(slc + '.xml')
img.setFilename(slc)
img.extraFilename = slc + '.vrt'
img.setAccessMode('READ')
img.renderHdr()
os.chdir('../')
#############################################
#1. form interferogram
#############################################
referenceSwath = referenceTrack.frames[i].swaths[j]
secondarySwath = secondaryTrack.frames[i].swaths[j]
#set up resampling parameters
width = referenceSwath.numberOfSamples
length = referenceSwath.numberOfLines
polyCoeff = self._insar.rangeResidualOffsetCc[i][j]
rgIndex = (np.arange(width) -
polyCoeff[-1][0]) / polyCoeff[-1][1]
azIndex = (np.arange(length) -
polyCoeff[-1][2]) / polyCoeff[-1][3]
rangeOffset = polyCoeff[0][0] + polyCoeff[0][1]*rgIndex[None,:] + polyCoeff[0][2]*rgIndex[None,:]**2 + \
(polyCoeff[1][0] + polyCoeff[1][1]*rgIndex[None,:]) * azIndex[:, None] + \
polyCoeff[2][0] * azIndex[:, None]**2
azimuthOffset = self._insar.azimuthResidualOffsetCc[i][j]
secondaryBurstResampledDir = self._insar.secondaryBurstPrefix + '_2_coreg_cc'
interferogramDir = 'burst_interf_2_coreg_cc'
interferogramPrefix = self._insar.referenceBurstPrefix + '-' + self._insar.secondaryBurstPrefix
resampleBursts(
referenceSwath,
secondarySwath,
self._insar.referenceBurstPrefix,
self._insar.secondaryBurstPrefix,
secondaryBurstResampledDir,
interferogramDir,
self._insar.referenceBurstPrefix,
self._insar.secondaryBurstPrefix,
self._insar.secondaryBurstPrefix,
interferogramPrefix,
os.path.join(
'../../../../{}/{}'.format(frameDir, swathDir),
self._insar.rangeOffset),
os.path.join(
'../../../../{}/{}'.format(frameDir, swathDir),
self._insar.azimuthOffset),
rangeOffsetResidual=rangeOffset,
azimuthOffsetResidual=azimuthOffset)
os.chdir(self._insar.referenceBurstPrefix)
mosaicBurstAmplitude(referenceSwath,
self._insar.referenceBurstPrefix,
self._insar.referenceMagnitude,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir(secondaryBurstResampledDir)
mosaicBurstAmplitude(referenceSwath,
self._insar.secondaryBurstPrefix,
self._insar.secondaryMagnitude,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir(interferogramDir)
mosaicBurstInterferogram(referenceSwath,
interferogramPrefix,
self._insar.interferogram,
numberOfLooksThreshold=4)
os.chdir('../')
amp = np.zeros((referenceSwath.numberOfLines,
2 * referenceSwath.numberOfSamples),
dtype=np.float32)
amp[0:, 1:referenceSwath.numberOfSamples*2:2] = np.fromfile(os.path.join(secondaryBurstResampledDir, self._insar.secondaryMagnitude), \
dtype=np.float32).reshape(referenceSwath.numberOfLines, referenceSwath.numberOfSamples)
amp[0:, 0:referenceSwath.numberOfSamples*2:2] = np.fromfile(os.path.join(self._insar.referenceBurstPrefix, self._insar.referenceMagnitude), \
dtype=np.float32).reshape(referenceSwath.numberOfLines, referenceSwath.numberOfSamples)
amp.astype(np.float32).tofile(self._insar.amplitude)
create_xml(self._insar.amplitude,
referenceSwath.numberOfSamples,
referenceSwath.numberOfLines, 'amp')
os.rename(
os.path.join(interferogramDir, self._insar.interferogram),
self._insar.interferogram)
os.rename(
os.path.join(interferogramDir,
self._insar.interferogram + '.vrt'),
self._insar.interferogram + '.vrt')
os.rename(
os.path.join(interferogramDir,
self._insar.interferogram + '.xml'),
self._insar.interferogram + '.xml')
#############################################
#2. delete subband slcs
#############################################
shutil.rmtree(self._insar.referenceBurstPrefix)
shutil.rmtree(self._insar.secondaryBurstPrefix)
shutil.rmtree(secondaryBurstResampledDir)
shutil.rmtree(interferogramDir)
os.chdir('../../../')
############################################################
# STEP 3. mosaic swaths
############################################################
from isceobj.Alos2Proc.runSwathMosaic import swathMosaic
from isceobj.Alos2Proc.Alos2ProcPublic import create_xml
for k in range(2):
os.chdir(ionDir['subband'][k])
for i, frameNumber in enumerate(self._insar.referenceFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
os.chdir(frameDir)
mosaicDir = 'mosaic'
os.makedirs(mosaicDir, exist_ok=True)
os.chdir(mosaicDir)
if self._insar.endingSwath - self._insar.startingSwath + 1 == 1:
import shutil
swathDir = 's{}'.format(
referenceTrack.frames[i].swaths[0].swathNumber)
# if not os.path.isfile(self._insar.interferogram):
# os.symlink(os.path.join('../', swathDir, self._insar.interferogram), self._insar.interferogram)
# shutil.copy2(os.path.join('../', swathDir, self._insar.interferogram+'.vrt'), self._insar.interferogram+'.vrt')
# shutil.copy2(os.path.join('../', swathDir, self._insar.interferogram+'.xml'), self._insar.interferogram+'.xml')
# if not os.path.isfile(self._insar.amplitude):
# os.symlink(os.path.join('../', swathDir, self._insar.amplitude), self._insar.amplitude)
# shutil.copy2(os.path.join('../', swathDir, self._insar.amplitude+'.vrt'), self._insar.amplitude+'.vrt')
# shutil.copy2(os.path.join('../', swathDir, self._insar.amplitude+'.xml'), self._insar.amplitude+'.xml')
os.rename(
os.path.join('../', swathDir, self._insar.interferogram),
self._insar.interferogram)
os.rename(
os.path.join('../', swathDir,
self._insar.interferogram + '.vrt'),
self._insar.interferogram + '.vrt')
os.rename(
os.path.join('../', swathDir,
self._insar.interferogram + '.xml'),
self._insar.interferogram + '.xml')
os.rename(os.path.join('../', swathDir, self._insar.amplitude),
self._insar.amplitude)
os.rename(
os.path.join('../', swathDir,
self._insar.amplitude + '.vrt'),
self._insar.amplitude + '.vrt')
os.rename(
os.path.join('../', swathDir,
self._insar.amplitude + '.xml'),
self._insar.amplitude + '.xml')
os.chdir('../')
os.chdir('../')
continue
#choose offsets
numberOfFrames = len(referenceTrack.frames)
numberOfSwaths = len(referenceTrack.frames[i].swaths)
if self.swathOffsetMatching:
#no need to do this as the API support 2-d list
#rangeOffsets = (np.array(self._insar.swathRangeOffsetMatchingReference)).reshape(numberOfFrames, numberOfSwaths)
#azimuthOffsets = (np.array(self._insar.swathAzimuthOffsetMatchingReference)).reshape(numberOfFrames, numberOfSwaths)
rangeOffsets = self._insar.swathRangeOffsetMatchingReference
azimuthOffsets = self._insar.swathAzimuthOffsetMatchingReference
else:
#rangeOffsets = (np.array(self._insar.swathRangeOffsetGeometricalReference)).reshape(numberOfFrames, numberOfSwaths)
#azimuthOffsets = (np.array(self._insar.swathAzimuthOffsetGeometricalReference)).reshape(numberOfFrames, numberOfSwaths)
rangeOffsets = self._insar.swathRangeOffsetGeometricalReference
azimuthOffsets = self._insar.swathAzimuthOffsetGeometricalReference
rangeOffsets = rangeOffsets[i]
azimuthOffsets = azimuthOffsets[i]
#list of input files
inputInterferograms = []
inputAmplitudes = []
phaseDiff = [None]
for j, swathNumber in enumerate(
range(self._insar.startingSwath,
self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
inputInterferograms.append(
os.path.join('../', swathDir, self._insar.interferogram))
inputAmplitudes.append(
os.path.join('../', swathDir, self._insar.amplitude))
#compute phase needed to be compensated using startingRange
if j >= 1:
#phaseDiffSwath1 = -4.0 * np.pi * (referenceTrack.frames[i].swaths[j-1].startingRange - secondaryTrack.frames[i].swaths[j-1].startingRange)/subbandRadarWavelength[k]
#phaseDiffSwath2 = -4.0 * np.pi * (referenceTrack.frames[i].swaths[j].startingRange - secondaryTrack.frames[i].swaths[j].startingRange)/subbandRadarWavelength[k]
phaseDiffSwath1 = +4.0 * np.pi * referenceTrack.frames[i].swaths[j-1].startingRange * (1.0/radarWavelength - 1.0/subbandRadarWavelength[k]) \
-4.0 * np.pi * secondaryTrack.frames[i].swaths[j-1].startingRange * (1.0/radarWavelength - 1.0/subbandRadarWavelength[k])
phaseDiffSwath2 = +4.0 * np.pi * referenceTrack.frames[i].swaths[j].startingRange * (1.0/radarWavelength - 1.0/subbandRadarWavelength[k]) \
-4.0 * np.pi * secondaryTrack.frames[i].swaths[j].startingRange * (1.0/radarWavelength - 1.0/subbandRadarWavelength[k])
if referenceTrack.frames[i].swaths[j-1].startingRange - secondaryTrack.frames[i].swaths[j-1].startingRange == \
referenceTrack.frames[i].swaths[j].startingRange - secondaryTrack.frames[i].swaths[j].startingRange:
#phaseDiff.append(phaseDiffSwath2 - phaseDiffSwath1)
#if reference and secondary versions are all before or after version 2.025 (starting range error < 0.5 m),
#it should be OK to do the above.
#see results in neom where it meets the above requirement, but there is still phase diff
#to be less risky, we do not input values here
phaseDiff.append(None)
else:
phaseDiff.append(None)
#note that frame parameters are updated after mosaicking
#mosaic amplitudes
swathMosaic(referenceTrack.frames[i],
inputAmplitudes,
self._insar.amplitude,
rangeOffsets,
azimuthOffsets,
self._insar.numberRangeLooks1,
self._insar.numberAzimuthLooks1,
resamplingMethod=0)
#mosaic interferograms
#These are for ALOS-2, may need to change for ALOS-4!
phaseDiffFixed = [
0.0, 0.4754024578084084, 0.9509913179406437,
1.4261648478671614, 2.179664007520499, 2.6766909968024932,
3.130810857
]
snapThreshold = 0.2
#the above preparetions only applies to 'self._insar.modeCombination == 21'
#looks like it also works for 31 (scansarNominalModes-stripmapModes)
if self._insar.modeCombination != 21:
phaseDiff = None
phaseDiffFixed = None
snapThreshold = None
(phaseDiffEst, phaseDiffUsed,
phaseDiffSource) = swathMosaic(referenceTrack.frames[i],
inputInterferograms,
self._insar.interferogram,
rangeOffsets,
azimuthOffsets,
self._insar.numberRangeLooks1,
self._insar.numberAzimuthLooks1,
updateFrame=False,
phaseCompensation=True,
phaseDiff=phaseDiff,
phaseDiffFixed=phaseDiffFixed,
snapThreshold=snapThreshold,
pcRangeLooks=1,
pcAzimuthLooks=3,
filt=False,
resamplingMethod=1)
#the first item is meaningless for all the following list, so only record the following items
if phaseDiff == None:
phaseDiff = [
None for iii in range(self._insar.startingSwath,
self._insar.endingSwath + 1)
]
catalog.addItem(
'{} subswath phase difference input'.format(
ionDir['subband'][k]), phaseDiff[1:], 'runIonSubband')
catalog.addItem(
'{} subswath phase difference estimated'.format(
ionDir['subband'][k]), phaseDiffEst[1:], 'runIonSubband')
catalog.addItem(
'{} subswath phase difference used'.format(
ionDir['subband'][k]), phaseDiffUsed[1:], 'runIonSubband')
catalog.addItem(
'{} subswath phase difference used source'.format(
ionDir['subband'][k]), phaseDiffSource[1:],
'runIonSubband')
#check if there is value around 3.130810857, which may not be stable
phaseDiffUnstableExist = False
for xxx in phaseDiffUsed:
if abs(abs(xxx) - 3.130810857) < 0.2:
phaseDiffUnstableExist = True
catalog.addItem(
'{} subswath phase difference unstable exists'.format(
ionDir['subband'][k]), phaseDiffUnstableExist,
'runIonSubband')
create_xml(self._insar.amplitude,
referenceTrack.frames[i].numberOfSamples,
referenceTrack.frames[i].numberOfLines, 'amp')
create_xml(self._insar.interferogram,
referenceTrack.frames[i].numberOfSamples,
referenceTrack.frames[i].numberOfLines, 'int')
os.chdir('../')
os.chdir('../')
os.chdir('../')
############################################################
# STEP 4. mosaic frames
############################################################
from isceobj.Alos2Proc.runFrameMosaic import frameMosaic
from isceobj.Alos2Proc.Alos2ProcPublic import create_xml
for k in range(2):
os.chdir(ionDir['subband'][k])
mosaicDir = 'insar'
os.makedirs(mosaicDir, exist_ok=True)
os.chdir(mosaicDir)
numberOfFrames = len(referenceTrack.frames)
if numberOfFrames == 1:
import shutil
frameDir = os.path.join('f1_{}/mosaic'.format(
self._insar.referenceFrames[0]))
# if not os.path.isfile(self._insar.interferogram):
# os.symlink(os.path.join('../', frameDir, self._insar.interferogram), self._insar.interferogram)
# #shutil.copy2() can overwrite
# shutil.copy2(os.path.join('../', frameDir, self._insar.interferogram+'.vrt'), self._insar.interferogram+'.vrt')
# shutil.copy2(os.path.join('../', frameDir, self._insar.interferogram+'.xml'), self._insar.interferogram+'.xml')
# if not os.path.isfile(self._insar.amplitude):
# os.symlink(os.path.join('../', frameDir, self._insar.amplitude), self._insar.amplitude)
# shutil.copy2(os.path.join('../', frameDir, self._insar.amplitude+'.vrt'), self._insar.amplitude+'.vrt')
# shutil.copy2(os.path.join('../', frameDir, self._insar.amplitude+'.xml'), self._insar.amplitude+'.xml')
os.rename(os.path.join('../', frameDir, self._insar.interferogram),
self._insar.interferogram)
os.rename(
os.path.join('../', frameDir,
self._insar.interferogram + '.vrt'),
self._insar.interferogram + '.vrt')
os.rename(
os.path.join('../', frameDir,
self._insar.interferogram + '.xml'),
self._insar.interferogram + '.xml')
os.rename(os.path.join('../', frameDir, self._insar.amplitude),
self._insar.amplitude)
os.rename(
os.path.join('../', frameDir, self._insar.amplitude + '.vrt'),
self._insar.amplitude + '.vrt')
os.rename(
os.path.join('../', frameDir, self._insar.amplitude + '.xml'),
self._insar.amplitude + '.xml')
else:
#choose offsets
if self.frameOffsetMatching:
rangeOffsets = self._insar.frameRangeOffsetMatchingReference
azimuthOffsets = self._insar.frameAzimuthOffsetMatchingReference
else:
rangeOffsets = self._insar.frameRangeOffsetGeometricalReference
azimuthOffsets = self._insar.frameAzimuthOffsetGeometricalReference
#list of input files
inputInterferograms = []
inputAmplitudes = []
for i, frameNumber in enumerate(self._insar.referenceFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
inputInterferograms.append(
os.path.join('../', frameDir, 'mosaic',
self._insar.interferogram))
inputAmplitudes.append(
os.path.join('../', frameDir, 'mosaic',
self._insar.amplitude))
#note that track parameters are updated after mosaicking
#mosaic amplitudes
frameMosaic(referenceTrack,
inputAmplitudes,
self._insar.amplitude,
rangeOffsets,
azimuthOffsets,
self._insar.numberRangeLooks1,
self._insar.numberAzimuthLooks1,
updateTrack=False,
phaseCompensation=False,
resamplingMethod=0)
#mosaic interferograms
frameMosaic(referenceTrack,
inputInterferograms,
self._insar.interferogram,
rangeOffsets,
azimuthOffsets,
self._insar.numberRangeLooks1,
self._insar.numberAzimuthLooks1,
updateTrack=False,
phaseCompensation=True,
resamplingMethod=1)
create_xml(self._insar.amplitude, referenceTrack.numberOfSamples,
referenceTrack.numberOfLines, 'amp')
create_xml(self._insar.interferogram,
referenceTrack.numberOfSamples,
referenceTrack.numberOfLines, 'int')
os.chdir('../')
os.chdir('../')
############################################################
# STEP 5. clear frame processing files
############################################################
import shutil
from isceobj.Alos2Proc.Alos2ProcPublic import runCmd
for k in range(2):
os.chdir(ionDir['subband'][k])
for i, frameNumber in enumerate(self._insar.referenceFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
shutil.rmtree(frameDir)
#cmd = 'rm -rf {}'.format(frameDir)
#runCmd(cmd)
os.chdir('../')
############################################################
# STEP 6. create differential interferograms
############################################################
import numpy as np
from isceobj.Alos2Proc.Alos2ProcPublic import runCmd
for k in range(2):
os.chdir(ionDir['subband'][k])
insarDir = ionDir['insar']
os.makedirs(insarDir, exist_ok=True)
os.chdir(insarDir)
rangePixelSize = self._insar.numberRangeLooks1 * referenceTrack.rangePixelSize
radarWavelength = subbandRadarWavelength[k]
rectRangeOffset = os.path.join('../../../', insarDir,
self._insar.rectRangeOffset)
cmd = "imageMath.py -e='a*exp(-1.0*J*b*4.0*{}*{}/{}) * (b!=0)' --a={} --b={} -o {} -t cfloat".format(
np.pi, rangePixelSize, radarWavelength, self._insar.interferogram,
rectRangeOffset, self._insar.differentialInterferogram)
runCmd(cmd)
os.chdir('../../')
os.chdir('../')
catalog.printToLog(logger, "runIonSubband")
self._insar.procDoc.addAllFromCatalog(catalog)
def runExtractBurst(self):
'''extract bursts.
'''
catalog = isceobj.Catalog.createCatalog(self._insar.procDoc.name)
self.updateParamemetersFromUser()
masterTrack = self._insar.loadTrack(master=True)
slaveTrack = self._insar.loadTrack(master=False)
#demFile = os.path.abspath(self._insar.dem)
#wbdFile = os.path.abspath(self._insar.wbd)
###############################################################################
for i, frameNumber in enumerate(self._insar.masterFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
os.chdir(frameDir)
for j, swathNumber in enumerate(
range(self._insar.startingSwath, self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
os.chdir(swathDir)
print('extracting bursts frame {}, swath {}'.format(
frameNumber, swathNumber))
az_ratio1 = 20.0
for k in range(2):
if k == 0:
#master
swath = masterTrack.frames[i].swaths[j]
unsynLines = self._insar.burstUnsynchronizedTime * swath.prf
extractDir = self._insar.masterBurstPrefix
burstPrefix = self._insar.masterBurstPrefix
fullApertureSlc = self._insar.masterSlc
magnitude = self._insar.masterMagnitude
else:
#slave
swath = slaveTrack.frames[i].swaths[j]
unsynLines = -self._insar.burstUnsynchronizedTime * swath.prf
extractDir = self._insar.slaveBurstPrefix
burstPrefix = self._insar.slaveBurstPrefix
fullApertureSlc = self._insar.slaveSlc
magnitude = self._insar.slaveMagnitude
#UPDATE SWATH PARAMETERS 1
#########################################################################################
if self._insar.burstSynchronization <= self.burstSynchronizationThreshold:
swath.burstLength -= abs(unsynLines)
if unsynLines < 0:
swath.burstStartTime += datetime.timedelta(
seconds=abs(unsynLines) / swath.prf)
#########################################################################################
#extract burst
os.makedirs(extractDir, exist_ok=True)
os.chdir(extractDir)
if os.path.isfile(os.path.join('../', fullApertureSlc)):
os.rename(os.path.join('../', fullApertureSlc),
fullApertureSlc)
os.rename(os.path.join('../', fullApertureSlc + '.vrt'),
fullApertureSlc + '.vrt')
os.rename(os.path.join('../', fullApertureSlc + '.xml'),
fullApertureSlc + '.xml')
extract_burst(fullApertureSlc, burstPrefix, swath.prf, swath.prfFraction, swath.burstLength, swath.burstCycleLength-swath.burstLength, \
(swath.burstStartTime - swath.sensingStart).total_seconds() * swath.prf, swath.azimuthFmrateVsPixel, swath.dopplerVsPixel, az_ratio1, 0.0)
#read output parameters
with open('extract_burst.txt', 'r') as f:
lines = f.readlines()
offsetFromFirstBurst = []
for linex in lines:
if 'total number of bursts extracted' in linex:
numberOfBursts = int(linex.split(':')[1])
if 'output burst length' in linex:
burstSlcNumberOfLines = int(linex.split(':')[1])
if 'line number of first line of first output burst in original SLC (1.0/prf)' in linex:
fb_ln = float(linex.split(':')[1])
if 'bsl of first output burst' in linex:
bsl_firstburst = float(linex.split(':')[1])
if 'offset from first burst' in linex:
offsetFromFirstBurst.append(
int(linex.split(',')[0].split(':')[1]))
#time of first line of first burst raw
firstBurstRawStartTime = swath.sensingStart + datetime.timedelta(
seconds=bsl_firstburst / swath.prf)
#time of first line of first burst slc
#original time is at the upper edge of first line, we change it to center of first line.
sensingStart = swath.sensingStart + datetime.timedelta(
seconds=fb_ln / swath.prf +
(az_ratio1 - 1.0) / 2.0 / swath.prf)
numberOfLines = offsetFromFirstBurst[numberOfBursts -
1] + burstSlcNumberOfLines
for ii in range(numberOfBursts):
burstFile = burstPrefix + '_%02d.slc' % (ii + 1)
create_xml(burstFile, swath.numberOfSamples,
burstSlcNumberOfLines, 'slc')
#UPDATE SWATH PARAMETERS 2
#########################################################################################
swath.numberOfLines = numberOfLines
#this is also the time of the first line of the first burst slc
swath.sensingStart = sensingStart
swath.azimuthPixelSize = az_ratio1 * swath.azimuthPixelSize
swath.azimuthLineInterval = az_ratio1 * swath.azimuthLineInterval
swath.numberOfBursts = numberOfBursts
swath.firstBurstRawStartTime = firstBurstRawStartTime
swath.firstBurstSlcStartTime = sensingStart
swath.burstSlcFirstLineOffsets = offsetFromFirstBurst
swath.burstSlcNumberOfSamples = swath.numberOfSamples
swath.burstSlcNumberOfLines = burstSlcNumberOfLines
#########################################################################################
#create a magnitude image
mosaicBurstAmplitude(swath,
burstPrefix,
magnitude,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir('../')
self._insar.saveProduct(masterTrack.frames[i],
self._insar.masterFrameParameter)
self._insar.saveProduct(slaveTrack.frames[i],
self._insar.slaveFrameParameter)
os.chdir('../')
###############################################################################
catalog.printToLog(logger, "runExtractBurst")
self._insar.procDoc.addAllFromCatalog(catalog)
def runCoregSd(self):
'''coregister bursts by spectral diversity
'''
catalog = isceobj.Catalog.createCatalog(self._insar.procDoc.name)
self.updateParamemetersFromUser()
referenceTrack = self._insar.loadTrack(reference=True)
secondaryTrack = self._insar.loadTrack(reference=False)
#demFile = os.path.abspath(self._insar.dem)
#wbdFile = os.path.abspath(self._insar.wbd)
###############################################################################
#self._insar.rangeResidualOffsetSd = [[] for i in range(len(referenceTrack.frames))]
self._insar.azimuthResidualOffsetSd = [
[] for i in range(len(referenceTrack.frames))
]
for i, frameNumber in enumerate(self._insar.referenceFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
os.chdir(frameDir)
for j, swathNumber in enumerate(
range(self._insar.startingSwath, self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
os.chdir(swathDir)
print('processing frame {}, swath {}'.format(
frameNumber, swathNumber))
referenceSwath = referenceTrack.frames[i].swaths[j]
secondarySwath = secondaryTrack.frames[i].swaths[j]
##################################################
# spectral diversity or mai
##################################################
sdDir = 'spectral_diversity'
os.makedirs(sdDir, exist_ok=True)
os.chdir(sdDir)
interferogramDir = 'burst_interf_2_coreg_cc'
interferogramPrefix = self._insar.referenceBurstPrefix + '-' + self._insar.secondaryBurstPrefix
offsetSd = spectralDiversity(referenceSwath,
os.path.join('../', interferogramDir),
interferogramPrefix,
self._insar.interferogramSd,
numberLooksScanSAR=4,
numberRangeLooks=28,
numberAzimuthLooks=8,
coherenceThreshold=0.85,
keep=True,
filt=True,
filtWinSizeRange=5,
filtWinSizeAzimuth=5)
#here use the number of looks for sd as filtWinSizeRange and filtWinSizeAzimuth to get the best filtering result?
os.chdir('../')
self._insar.azimuthResidualOffsetSd[i].append(offsetSd)
catalog.addItem(
'azimuth residual offset at frame {}, swath {}'.format(
frameNumber, swathNumber), '{}'.format(offsetSd),
'runCoregSd')
#this small residual azimuth offset has small impact, it's not worth the time to resample secondary bursts again.
formInterferogram = False
if formInterferogram:
##################################################
# resample bursts
##################################################
secondaryBurstResampledDir = self._insar.secondaryBurstPrefix + '_3_coreg_sd'
#interferogramDir = self._insar.referenceBurstPrefix + '-' + self._insar.secondaryBurstPrefix + '_coreg_geom'
interferogramDir = 'burst_interf_3_coreg_sd'
interferogramPrefix = self._insar.referenceBurstPrefix + '-' + self._insar.secondaryBurstPrefix
resampleBursts(
referenceSwath,
secondarySwath,
self._insar.referenceBurstPrefix,
self._insar.secondaryBurstPrefix,
secondaryBurstResampledDir,
interferogramDir,
self._insar.referenceBurstPrefix,
self._insar.secondaryBurstPrefix,
self._insar.secondaryBurstPrefix,
interferogramPrefix,
self._insar.rangeOffset,
self._insar.azimuthOffset,
rangeOffsetResidual=self._insar.rangeResidualOffsetCc[i]
[j],
azimuthOffsetResidual=self._insar.
azimuthResidualOffsetCc[i][j] + offsetSd)
##################################################
# mosaic burst amplitudes and interferograms
##################################################
os.chdir(secondaryBurstResampledDir)
mosaicBurstAmplitude(referenceSwath,
self._insar.secondaryBurstPrefix,
self._insar.secondaryMagnitude,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir(interferogramDir)
mosaicBurstInterferogram(referenceSwath,
interferogramPrefix,
self._insar.interferogram,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir('../')
os.chdir('../')
###############################################################################
catalog.printToLog(logger, "runCoregSd")
self._insar.procDoc.addAllFromCatalog(catalog)
def runIonSubband(self):
'''create subband interferograms
'''
catalog = isceobj.Catalog.createCatalog(self._insar.procDoc.name)
self.updateParamemetersFromUser()
if not self.doIon:
catalog.printToLog(logger, "runIonSubband")
self._insar.procDoc.addAllFromCatalog(catalog)
return
masterTrack = self._insar.loadTrack(master=True)
slaveTrack = self._insar.loadTrack(master=False)
#using 1/3, 1/3, 1/3 band split
radarWavelength = masterTrack.radarWavelength
rangeBandwidth = masterTrack.frames[0].swaths[0].rangeBandwidth
rangeSamplingRate = masterTrack.frames[0].swaths[0].rangeSamplingRate
radarWavelengthLower = SPEED_OF_LIGHT / (SPEED_OF_LIGHT / radarWavelength -
rangeBandwidth / 3.0)
radarWavelengthUpper = SPEED_OF_LIGHT / (SPEED_OF_LIGHT / radarWavelength +
rangeBandwidth / 3.0)
subbandRadarWavelength = [radarWavelengthLower, radarWavelengthUpper]
subbandBandWidth = [
rangeBandwidth / 3.0 / rangeSamplingRate,
rangeBandwidth / 3.0 / rangeSamplingRate
]
subbandFrequencyCenter = [
-rangeBandwidth / 3.0 / rangeSamplingRate,
rangeBandwidth / 3.0 / rangeSamplingRate
]
subbandPrefix = ['lower', 'upper']
'''
ionDir = {
ionDir['swathMosaic'] : 'mosaic',
ionDir['insar'] : 'insar',
ionDir['ion'] : 'ion',
ionDir['subband'] : ['lower', 'upper'],
ionDir['ionCal'] : 'ion_cal'
}
'''
#define upper level directory names
ionDir = defineIonDir()
self._insar.subbandRadarWavelength = subbandRadarWavelength
############################################################
# STEP 1. create directories
############################################################
#create and enter 'ion' directory
#after finishing each step, we are in this directory
if not os.path.exists(ionDir['ion']):
os.makedirs(ionDir['ion'])
os.chdir(ionDir['ion'])
#create insar processing directories
for k in range(2):
subbandDir = ionDir['subband'][k]
for i, frameNumber in enumerate(self._insar.masterFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
for j, swathNumber in enumerate(
range(self._insar.startingSwath,
self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
fullDir = os.path.join(subbandDir, frameDir, swathDir)
if not os.path.exists(fullDir):
os.makedirs(fullDir)
#create ionospheric phase directory
if not os.path.exists(ionDir['ionCal']):
os.makedirs(ionDir['ionCal'])
############################################################
# STEP 2. create subband interferograms
############################################################
import shutil
import numpy as np
from contrib.alos2proc.alos2proc import rg_filter
from isceobj.Alos2Proc.Alos2ProcPublic import resampleBursts
from isceobj.Alos2Proc.Alos2ProcPublic import mosaicBurstAmplitude
from isceobj.Alos2Proc.Alos2ProcPublic import mosaicBurstInterferogram
from isceobj.Alos2Proc.Alos2ProcPublic import create_xml
for i, frameNumber in enumerate(self._insar.masterFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
for j, swathNumber in enumerate(
range(self._insar.startingSwath, self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
#filter master and slave images
for burstPrefix, swath in zip(
[self._insar.masterBurstPrefix, self._insar.slaveBurstPrefix],
[
masterTrack.frames[i].swaths[j],
slaveTrack.frames[i].swaths[j]
]):
slcDir = os.path.join('../', frameDir, swathDir, burstPrefix)
slcLowerDir = os.path.join(ionDir['subband'][0], frameDir,
swathDir, burstPrefix)
slcUpperDir = os.path.join(ionDir['subband'][1], frameDir,
swathDir, burstPrefix)
if not os.path.exists(slcLowerDir):
os.makedirs(slcLowerDir)
if not os.path.exists(slcUpperDir):
os.makedirs(slcUpperDir)
for k in range(swath.numberOfBursts):
print('processing burst: %02d' % (k + 1))
slc = os.path.join(slcDir,
burstPrefix + '_%02d.slc' % (k + 1))
slcLower = os.path.join(
slcLowerDir, burstPrefix + '_%02d.slc' % (k + 1))
slcUpper = os.path.join(
slcUpperDir, burstPrefix + '_%02d.slc' % (k + 1))
rg_filter(slc, 2, [slcLower, slcUpper], subbandBandWidth,
subbandFrequencyCenter, 257, 2048, 0.1, 0, 0.0)
#resample
for l in range(2):
os.chdir(os.path.join(ionDir['subband'][l], frameDir,
swathDir))
#recreate xml file to remove the file path
#can also use fixImageXml.py?
for burstPrefix, swath in zip([
self._insar.masterBurstPrefix,
self._insar.slaveBurstPrefix
], [
masterTrack.frames[i].swaths[j],
slaveTrack.frames[i].swaths[j]
]):
os.chdir(burstPrefix)
for k in range(swath.numberOfBursts):
slc = burstPrefix + '_%02d.slc' % (k + 1)
img = isceobj.createSlcImage()
img.load(slc + '.xml')
img.setFilename(slc)
img.extraFilename = slc + '.vrt'
img.setAccessMode('READ')
img.renderHdr()
os.chdir('../')
#############################################
#1. form interferogram
#############################################
masterSwath = masterTrack.frames[i].swaths[j]
slaveSwath = slaveTrack.frames[i].swaths[j]
#set up resampling parameters
width = masterSwath.numberOfSamples
length = masterSwath.numberOfLines
polyCoeff = self._insar.rangeResidualOffsetCc[i][j]
rgIndex = (np.arange(width) -
polyCoeff[-1][0]) / polyCoeff[-1][1]
azIndex = (np.arange(length) -
polyCoeff[-1][2]) / polyCoeff[-1][3]
rangeOffset = polyCoeff[0][0] + polyCoeff[0][1]*rgIndex[None,:] + polyCoeff[0][2]*rgIndex[None,:]**2 + \
(polyCoeff[1][0] + polyCoeff[1][1]*rgIndex[None,:]) * azIndex[:, None] + \
polyCoeff[2][0] * azIndex[:, None]**2
azimuthOffset = self._insar.azimuthResidualOffsetCc[i][j]
slaveBurstResampledDir = self._insar.slaveBurstPrefix + '_2_coreg_cc'
interferogramDir = 'burst_interf_2_coreg_cc'
interferogramPrefix = self._insar.masterBurstPrefix + '-' + self._insar.slaveBurstPrefix
resampleBursts(
masterSwath,
slaveSwath,
self._insar.masterBurstPrefix,
self._insar.slaveBurstPrefix,
slaveBurstResampledDir,
interferogramDir,
self._insar.masterBurstPrefix,
self._insar.slaveBurstPrefix,
self._insar.slaveBurstPrefix,
interferogramPrefix,
os.path.join(
'../../../../{}/{}'.format(frameDir, swathDir),
self._insar.rangeOffset),
os.path.join(
'../../../../{}/{}'.format(frameDir, swathDir),
self._insar.azimuthOffset),
rangeOffsetResidual=rangeOffset,
azimuthOffsetResidual=azimuthOffset)
os.chdir(self._insar.masterBurstPrefix)
mosaicBurstAmplitude(masterSwath,
self._insar.masterBurstPrefix,
self._insar.masterMagnitude,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir(slaveBurstResampledDir)
mosaicBurstAmplitude(masterSwath,
self._insar.slaveBurstPrefix,
self._insar.slaveMagnitude,
numberOfLooksThreshold=4)
os.chdir('../')
os.chdir(interferogramDir)
mosaicBurstInterferogram(masterSwath,
interferogramPrefix,
self._insar.interferogram,
numberOfLooksThreshold=4)
os.chdir('../')
amp = np.zeros((masterSwath.numberOfLines,
2 * masterSwath.numberOfSamples),
dtype=np.float32)
amp[0:, 1:masterSwath.numberOfSamples*2:2] = np.fromfile(os.path.join(slaveBurstResampledDir, self._insar.slaveMagnitude), \
dtype=np.float32).reshape(masterSwath.numberOfLines, masterSwath.numberOfSamples)
amp[0:, 0:masterSwath.numberOfSamples*2:2] = np.fromfile(os.path.join(self._insar.masterBurstPrefix, self._insar.masterMagnitude), \
dtype=np.float32).reshape(masterSwath.numberOfLines, masterSwath.numberOfSamples)
amp.astype(np.float32).tofile(self._insar.amplitude)
create_xml(self._insar.amplitude, masterSwath.numberOfSamples,
masterSwath.numberOfLines, 'amp')
os.rename(
os.path.join(interferogramDir, self._insar.interferogram),
self._insar.interferogram)
os.rename(
os.path.join(interferogramDir,
self._insar.interferogram + '.vrt'),
self._insar.interferogram + '.vrt')
os.rename(
os.path.join(interferogramDir,
self._insar.interferogram + '.xml'),
self._insar.interferogram + '.xml')
#############################################
#2. delete subband slcs
#############################################
shutil.rmtree(self._insar.masterBurstPrefix)
shutil.rmtree(self._insar.slaveBurstPrefix)
shutil.rmtree(slaveBurstResampledDir)
shutil.rmtree(interferogramDir)
os.chdir('../../../')
############################################################
# STEP 3. mosaic swaths
############################################################
from isceobj.Alos2Proc.runSwathMosaic import swathMosaic
from isceobj.Alos2Proc.Alos2ProcPublic import create_xml
for k in range(2):
os.chdir(ionDir['subband'][k])
for i, frameNumber in enumerate(self._insar.masterFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
os.chdir(frameDir)
mosaicDir = 'mosaic'
if not os.path.exists(mosaicDir):
os.makedirs(mosaicDir)
os.chdir(mosaicDir)
if self._insar.endingSwath - self._insar.startingSwath + 1 == 1:
import shutil
swathDir = 's{}'.format(
masterTrack.frames[i].swaths[0].swathNumber)
# if not os.path.isfile(self._insar.interferogram):
# os.symlink(os.path.join('../', swathDir, self._insar.interferogram), self._insar.interferogram)
# shutil.copy2(os.path.join('../', swathDir, self._insar.interferogram+'.vrt'), self._insar.interferogram+'.vrt')
# shutil.copy2(os.path.join('../', swathDir, self._insar.interferogram+'.xml'), self._insar.interferogram+'.xml')
# if not os.path.isfile(self._insar.amplitude):
# os.symlink(os.path.join('../', swathDir, self._insar.amplitude), self._insar.amplitude)
# shutil.copy2(os.path.join('../', swathDir, self._insar.amplitude+'.vrt'), self._insar.amplitude+'.vrt')
# shutil.copy2(os.path.join('../', swathDir, self._insar.amplitude+'.xml'), self._insar.amplitude+'.xml')
os.rename(
os.path.join('../', swathDir, self._insar.interferogram),
self._insar.interferogram)
os.rename(
os.path.join('../', swathDir,
self._insar.interferogram + '.vrt'),
self._insar.interferogram + '.vrt')
os.rename(
os.path.join('../', swathDir,
self._insar.interferogram + '.xml'),
self._insar.interferogram + '.xml')
os.rename(os.path.join('../', swathDir, self._insar.amplitude),
self._insar.amplitude)
os.rename(
os.path.join('../', swathDir,
self._insar.amplitude + '.vrt'),
self._insar.amplitude + '.vrt')
os.rename(
os.path.join('../', swathDir,
self._insar.amplitude + '.xml'),
self._insar.amplitude + '.xml')
os.chdir('../')
os.chdir('../')
continue
#choose offsets
numberOfFrames = len(masterTrack.frames)
numberOfSwaths = len(masterTrack.frames[i].swaths)
if self.swathOffsetMatching:
#no need to do this as the API support 2-d list
#rangeOffsets = (np.array(self._insar.swathRangeOffsetMatchingMaster)).reshape(numberOfFrames, numberOfSwaths)
#azimuthOffsets = (np.array(self._insar.swathAzimuthOffsetMatchingMaster)).reshape(numberOfFrames, numberOfSwaths)
rangeOffsets = self._insar.swathRangeOffsetMatchingMaster
azimuthOffsets = self._insar.swathAzimuthOffsetMatchingMaster
else:
#rangeOffsets = (np.array(self._insar.swathRangeOffsetGeometricalMaster)).reshape(numberOfFrames, numberOfSwaths)
#azimuthOffsets = (np.array(self._insar.swathAzimuthOffsetGeometricalMaster)).reshape(numberOfFrames, numberOfSwaths)
rangeOffsets = self._insar.swathRangeOffsetGeometricalMaster
azimuthOffsets = self._insar.swathAzimuthOffsetGeometricalMaster
rangeOffsets = rangeOffsets[i]
azimuthOffsets = azimuthOffsets[i]
#list of input files
inputInterferograms = []
inputAmplitudes = []
for j, swathNumber in enumerate(
range(self._insar.startingSwath,
self._insar.endingSwath + 1)):
swathDir = 's{}'.format(swathNumber)
inputInterferograms.append(
os.path.join('../', swathDir, self._insar.interferogram))
inputAmplitudes.append(
os.path.join('../', swathDir, self._insar.amplitude))
#note that frame parameters are updated after mosaicking
#mosaic amplitudes
swathMosaic(masterTrack.frames[i],
inputAmplitudes,
self._insar.amplitude,
rangeOffsets,
azimuthOffsets,
self._insar.numberRangeLooks1,
self._insar.numberAzimuthLooks1,
resamplingMethod=0)
#mosaic interferograms
swathMosaic(masterTrack.frames[i],
inputInterferograms,
self._insar.interferogram,
rangeOffsets,
azimuthOffsets,
self._insar.numberRangeLooks1,
self._insar.numberAzimuthLooks1,
updateFrame=False,
phaseCompensation=True,
resamplingMethod=1)
create_xml(self._insar.amplitude,
masterTrack.frames[i].numberOfSamples,
masterTrack.frames[i].numberOfLines, 'amp')
create_xml(self._insar.interferogram,
masterTrack.frames[i].numberOfSamples,
masterTrack.frames[i].numberOfLines, 'int')
os.chdir('../')
os.chdir('../')
os.chdir('../')
############################################################
# STEP 4. mosaic frames
############################################################
from isceobj.Alos2Proc.runFrameMosaic import frameMosaic
from isceobj.Alos2Proc.Alos2ProcPublic import create_xml
for k in range(2):
os.chdir(ionDir['subband'][k])
mosaicDir = 'insar'
if not os.path.exists(mosaicDir):
os.makedirs(mosaicDir)
os.chdir(mosaicDir)
numberOfFrames = len(masterTrack.frames)
if numberOfFrames == 1:
import shutil
frameDir = os.path.join('f1_{}/mosaic'.format(
self._insar.masterFrames[0]))
# if not os.path.isfile(self._insar.interferogram):
# os.symlink(os.path.join('../', frameDir, self._insar.interferogram), self._insar.interferogram)
# #shutil.copy2() can overwrite
# shutil.copy2(os.path.join('../', frameDir, self._insar.interferogram+'.vrt'), self._insar.interferogram+'.vrt')
# shutil.copy2(os.path.join('../', frameDir, self._insar.interferogram+'.xml'), self._insar.interferogram+'.xml')
# if not os.path.isfile(self._insar.amplitude):
# os.symlink(os.path.join('../', frameDir, self._insar.amplitude), self._insar.amplitude)
# shutil.copy2(os.path.join('../', frameDir, self._insar.amplitude+'.vrt'), self._insar.amplitude+'.vrt')
# shutil.copy2(os.path.join('../', frameDir, self._insar.amplitude+'.xml'), self._insar.amplitude+'.xml')
os.rename(os.path.join('../', frameDir, self._insar.interferogram),
self._insar.interferogram)
os.rename(
os.path.join('../', frameDir,
self._insar.interferogram + '.vrt'),
self._insar.interferogram + '.vrt')
os.rename(
os.path.join('../', frameDir,
self._insar.interferogram + '.xml'),
self._insar.interferogram + '.xml')
os.rename(os.path.join('../', frameDir, self._insar.amplitude),
self._insar.amplitude)
os.rename(
os.path.join('../', frameDir, self._insar.amplitude + '.vrt'),
self._insar.amplitude + '.vrt')
os.rename(
os.path.join('../', frameDir, self._insar.amplitude + '.xml'),
self._insar.amplitude + '.xml')
else:
#choose offsets
if self.frameOffsetMatching:
rangeOffsets = self._insar.frameRangeOffsetMatchingMaster
azimuthOffsets = self._insar.frameAzimuthOffsetMatchingMaster
else:
rangeOffsets = self._insar.frameRangeOffsetGeometricalMaster
azimuthOffsets = self._insar.frameAzimuthOffsetGeometricalMaster
#list of input files
inputInterferograms = []
inputAmplitudes = []
for i, frameNumber in enumerate(self._insar.masterFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
inputInterferograms.append(
os.path.join('../', frameDir, 'mosaic',
self._insar.interferogram))
inputAmplitudes.append(
os.path.join('../', frameDir, 'mosaic',
self._insar.amplitude))
#note that track parameters are updated after mosaicking
#mosaic amplitudes
frameMosaic(masterTrack,
inputAmplitudes,
self._insar.amplitude,
rangeOffsets,
azimuthOffsets,
self._insar.numberRangeLooks1,
self._insar.numberAzimuthLooks1,
updateTrack=False,
phaseCompensation=False,
resamplingMethod=0)
#mosaic interferograms
frameMosaic(masterTrack,
inputInterferograms,
self._insar.interferogram,
rangeOffsets,
azimuthOffsets,
self._insar.numberRangeLooks1,
self._insar.numberAzimuthLooks1,
updateTrack=False,
phaseCompensation=True,
resamplingMethod=1)
create_xml(self._insar.amplitude, masterTrack.numberOfSamples,
masterTrack.numberOfLines, 'amp')
create_xml(self._insar.interferogram, masterTrack.numberOfSamples,
masterTrack.numberOfLines, 'int')
os.chdir('../')
os.chdir('../')
############################################################
# STEP 5. clear frame processing files
############################################################
import shutil
from isceobj.Alos2Proc.Alos2ProcPublic import runCmd
for k in range(2):
os.chdir(ionDir['subband'][k])
for i, frameNumber in enumerate(self._insar.masterFrames):
frameDir = 'f{}_{}'.format(i + 1, frameNumber)
shutil.rmtree(frameDir)
#cmd = 'rm -rf {}'.format(frameDir)
#runCmd(cmd)
os.chdir('../')
############################################################
# STEP 6. create differential interferograms
############################################################
import numpy as np
from isceobj.Alos2Proc.Alos2ProcPublic import runCmd
for k in range(2):
os.chdir(ionDir['subband'][k])
insarDir = ionDir['insar']
if not os.path.exists(insarDir):
os.makedirs(insarDir)
os.chdir(insarDir)
rangePixelSize = self._insar.numberRangeLooks1 * masterTrack.rangePixelSize
radarWavelength = subbandRadarWavelength[k]
rectRangeOffset = os.path.join('../../../', insarDir,
self._insar.rectRangeOffset)
cmd = "imageMath.py -e='a*exp(-1.0*J*b*4.0*{}*{}/{}) * (b!=0)' --a={} --b={} -o {} -t cfloat".format(
np.pi, rangePixelSize, radarWavelength, self._insar.interferogram,
rectRangeOffset, self._insar.differentialInterferogram)
runCmd(cmd)
os.chdir('../../')
os.chdir('../')
catalog.printToLog(logger, "runIonSubband")
self._insar.procDoc.addAllFromCatalog(catalog)
