Python trim_variant_fields Beispiele

Beispiel #1

Datei: test_variant_helpers.py Projekt: Al3n70rn/isovar

def test_trim_variant_fields_deletion():
    loc, ref, alt = trim_variant_fields(10, "CG", "C")
    eq_(loc, 11)
    eq_(ref, "G")
    eq_(alt, "")

Beispiel #2

Datei: test_variant_helpers.py Projekt: Al3n70rn/isovar

def test_trim_variant_fields_insertion():
    loc, ref, alt = trim_variant_fields(10, "C", "CG")
    eq_(loc, 10)
    eq_(ref, "")
    eq_(alt, "G")

Beispiel #3

Datei: test_variant_helpers.py Projekt: Al3n70rn/isovar

def test_trim_variant_fields_substitution():
    loc, ref, alt = trim_variant_fields(10, "C", "G")
    eq_(loc, 10)
    eq_(ref, "C")
    eq_(alt, "G")

Beispiel #4

def test_trim_variant_fields_deletion():
    loc, ref, alt = trim_variant_fields(10, "CG", "C")
    eq_(loc, 11)
    eq_(ref, "G")
    eq_(alt, "")

Beispiel #5

def test_trim_variant_fields_insertion():
    loc, ref, alt = trim_variant_fields(10, "C", "CG")
    eq_(loc, 10)
    eq_(ref, "")
    eq_(alt, "G")

Beispiel #6

def test_trim_variant_fields_substitution():
    loc, ref, alt = trim_variant_fields(10, "C", "G")
    eq_(loc, 10)
    eq_(ref, "C")
    eq_(alt, "G")