def test_optional_array_prefixes(self):
t = ToolInput(
"filesD",
Array(String(), optional=True),
prefix="-D",
prefix_applies_to_all_elements=True,
)
cwltoolinput = cwl.translate_tool_input(t, None)
self.assertDictEqual(
{
"id":
"filesD",
"label":
"filesD",
"inputBinding": {},
"type": [
{
"inputBinding": {
"prefix": "-D"
},
"items": "string",
"type": "array",
},
"null",
],
},
dict(cwltoolinput.save()),
)
def test_separated_input_bindingin(self):
t = ToolInput(
"filesC",
Array(String()),
prefix="-C=",
separate_value_from_prefix=False,
position=4,
separator=",",
)
cwltoolinput = cwl.translate_tool_input(t, None)
self.assertDictEqual(
{
"id": "filesC",
"label": "filesC",
"type": {
"items": "string",
"type": "array"
},
"inputBinding": {
"prefix": "-C=",
"itemSeparator": ",",
"separate": False,
"position": 4,
},
},
cwltoolinput.save(),
)
def test_nested_input_binding(self):
t = ToolInput(
"filesB",
Array(String()),
prefix="-B=",
separate_value_from_prefix=False,
position=2,
prefix_applies_to_all_elements=True,
)
cwltoolinput = cwl.translate_tool_input(t, None)
self.assertDictEqual(
{
"id": "filesB",
"label": "filesB",
"type": {
"items": "string",
"type": "array",
"inputBinding": {
"prefix": "-B=",
"separate": False
},
},
"inputBinding": {
"position": 2
},
},
cwltoolinput.save(),
)
def test_regular_input_bindingin(self):
t = ToolInput("filesA", Array(String()), prefix="-A", position=1)
cwltoolinput = cwl.translate_tool_input(t, None, None).save()
self.assertDictEqual(
{
"id": "filesA",
"label": "filesA",
"type": {"items": "string", "type": "array"},
"inputBinding": {"prefix": "-A", "position": 1},
},
cwltoolinput,
)
def test_1(self):
tool = FilenameGeneratedTool()
inputsdict = {t.id(): t for t in tool.inputs()}
mapped = [cwl.translate_tool_input(i, inputsdict, tool) for i in tool.inputs()]
expressions = [
mapped[i].save()["inputBinding"]["valueFrom"] for i in range(4, len(mapped))
]
self.assertEqual("$(inputs.inp)", expressions[0])
self.assertEqual(
'$(inputs.inpOptional ? inputs.inpOptional : "generated")', expressions[1]
)
self.assertEqual(
'$(inputs.fileInp.basename.replace(/.txt$/, "")).transformed.fnp',
expressions[2],
)
self.assertEqual(
'$(inputs.fileInpOptional ? inputs.fileInpOptional.basename.replace(/.txt$/, "") : "generated").optional.txt',
expressions[3],
)