def getXY(image):
image.setC(2)
pp = ProfilePlot(image).getPlot()
pw = PlotWindow(image, pp)
x, y = pw.getXValues(), pw.getYValues()
# convert to java double for use in CurveFitter() class
xd = [Double(i) for i in x]
yd = [Double(i) for i in y]
return xd, yd
def test_nonzero(self):
i, pi, j, pj, d, pd = self.get_values()
self.assertEqual(bool(i), bool(pi))
self.assertEqual(bool(j), bool(pj))
self.assertEqual(bool(d), bool(pd))
self.assertFalse(bool(Integer(0)))
self.assertFalse(bool(Long(0)))
self.assertFalse(bool(Double(0.0)))
self.assertTrue(bool(Integer(1)))
self.assertTrue(bool(Long(1)))
self.assertTrue(bool(Double(1.0)))
def test_compare(self):
pfive = 5
jfive = Integer(5)
ptwosix = 2.6
jtwosix = Double(2.6)
# Need to check with same values on opposite sides of the operator due
# to Python's richcompare behavior.
# check the trues first
self.assertTrue(pfive > jtwosix)
self.assertTrue(jtwosix < pfive)
self.assertTrue(ptwosix < jfive)
self.assertTrue(jfive > ptwosix)
self.assertTrue(ptwosix == jtwosix)
self.assertTrue(jtwosix == ptwosix)
self.assertTrue(pfive == jfive)
self.assertTrue(jfive == pfive)
# check the falses next
self.assertFalse(pfive < jtwosix)
self.assertFalse(jtwosix > pfive)
self.assertFalse(ptwosix > jfive)
self.assertFalse(jfive < ptwosix)
self.assertFalse(pfive != jfive)
self.assertFalse(jfive != pfive)
self.assertFalse(ptwosix != jtwosix)
self.assertFalse(jtwosix != ptwosix)
def addMapBackground(self,
mapName,
color=None,
lineWidth=None,
linePattern=None,
xOffset=None,
yOffset=None,
labelAttribute=None,
fontOffset=None):
from com.raytheon.uf.viz.core.maps import MapManager
rsc = MapManager.getInstance(
self.getDescriptor()).loadMapByBundleName(mapName).getResource()
if color is not None:
rsc.getCapability(ColorableCapability).setColor(
RGBColors.getRGBColor(color))
if lineWidth is not None:
rsc.getCapability(OutlineCapability).setOutlineWidth(lineWidth)
if linePattern is not None:
rsc.getCapability(OutlineCapability).setLineStyle(linePattern)
if xOffset is not None:
rsc.getCapability(LabelableCapability).setxOffset(xOffset)
if yOffset is not None:
rsc.getCapability(LabelableCapability).setyOffset(yOffset)
rsc.getCapability(LabelableCapability).setLabelField(labelAttribute)
if fontOffset is not None:
mag = Double(1.26**fontOffset)
rsc.getCapability(MagnificationCapability).setMagnification(mag)
def getGlobals(mod):
mp = HashMap()
for attrName in mod.__dict__:
if not attrName.startswith('__'):
attr = mod.__getattribute__(attrName)
t = type(attr)
if t is not list:
if t is str:
mp.put(attrName, attr)
elif t is int:
mp.put(attrName, Integer(attr))
elif t is float:
mp.put(attrName, Double(attr))
elif t is bool:
mp.put(attrName, Boolean(attr))
else:
arr = None
if len(attr) > 0:
t = type(attr[0])
if t is int:
arr = __fillArray(attr, Integer)
elif t is float:
arr = __fillArray(attr, Double)
elif t is str:
arr = __fillArray(attr, String)
mp.put(attrName, arr)
return mp
def get_values(self):
i = Integer(-5)
pi = i.intValue()
j = Long(5001)
pj = j.longValue()
d = Double(10.001)
pd = d.doubleValue()
return i, pi, j, pj, d, pd
def __init__(self):
head = 'Byte,Double,Float,Integer,Long,Short'.split(',')
self.data = [[
Byte(Byte.MIN_VALUE),
Double(Double.MIN_VALUE),
Float(Float.MIN_VALUE),
Integer(Integer.MIN_VALUE),
Long(Long.MIN_VALUE),
Short(Short.MIN_VALUE)
],
[
Byte(Byte.MAX_VALUE),
Double(Double.MAX_VALUE),
Float(Float.MAX_VALUE),
Integer(Integer.MAX_VALUE),
Long(Long.MAX_VALUE),
Short(Short.MAX_VALUE)
]]
DefaultTableModel.__init__(self, self.data, head)
def _makeInstance(self, i, instances=None):
inst = Instance(len(i))
if instances is not None:
inst.setDataset(instances)
for (attName, value) in i.iteritems():
if attName in self.numericAttributes: value = Double(value)
else: value = String(value)
attr = self.attName2Obj[attName]
#print self.attName2Domain
#print "attName, value", attName, value
inst.setValue(attr, value)
return inst
def __init__(self, data, headings):
info = []
df = DateFormat.getDateInstance(DateFormat.SHORT)
for tf, date, size, f, d in data:
info.append([
Boolean(tf == '1'),
df.parse(date),
Integer(size.strip().replace(',', '')),
Float(f),
Double(d)
])
DefaultTableModel.__init__(self, info, headings)
def upload_rt_as_omero_table(rt, ctx, target_id, target_type, roivec=[]):
"Convert results into an OMERO table"
roivec_cols = ['ROI-id', 'Shape-id', 'Z', 'C', 'T']
length = len(roivec_cols)
no_of_columns = rt.getLastColumn() + length
no_of_rows = rt.size()
data = [[Double(0) for x in range(no_of_rows)]
for y in range(no_of_columns)]
columns = [TableDataColumn] * no_of_columns
for c in range(0, no_of_columns):
if c < length:
colname = roivec_cols[c]
rows = [Double(i[c]) for i in roivec]
columns[c] = TableDataColumn(colname, c, Double)
else:
colname = rt.getColumnHeading(c - length)
rows = rt.getColumnAsDoubles(c - length)
columns[c] = TableDataColumn(colname, c, Double)
if rows is None:
continue
for r in range(0, len(rows)):
data[c][r] = rows[r]
table_data = TableData(columns, data)
browse = gateway.getFacility(BrowseFacility)
# use the appropriate target DataObject and attach the MapAnnotationData object to it
if target_type == "Project":
target_obj = ProjectData(ProjectI(target_id, False))
elif target_type == "Dataset":
target_obj = DatasetData(DatasetI(target_id, False))
elif target_type == "Image":
target_obj = browse.getImage(ctx, long(target_id))
table_facility = gateway.getFacility(TablesFacility)
table_facility.addTable(ctx, target_obj, "Table_from_Fiji", table_data)
def map_to_vertx(value):
"""Converts a Jython type to a Vert.x type."""
if value is None:
return value
if isinstance(value, (list, tuple)):
return org.vertx.java.core.json.JsonArray(map_seq_to_java(value))
elif isinstance(value, dict):
return org.vertx.java.core.json.JsonObject(map_dict_to_java(value))
elif isinstance(value, Buffer):
return value._to_java_buffer()
elif isinstance(value, long):
return Long(value)
elif isinstance(value, float):
return Double(value)
elif isinstance(value, int):
return Integer(value)
return map_to_java(value)
def getJavaValue(self, value, type):
try:
if type == AppilogTypes.LONG_DEF:
return Long(value)
if type == AppilogTypes.INTEGER_DEF:
return Integer(value)
if type == AppilogTypes.FLOAT_DEF:
return Float(value)
if type == AppilogTypes.DOUBLE_DEF:
return Double(value)
if type == AppilogTypes.BOOLEAN_DEF:
return Boolean(value)
return value
except JavaException, ex:
msg = ex.getMessage()
info = logger.prepareJavaStackTrace()
logger.debug(info)
raise CiImportException, self.makeConversionMessage(
'Error while converting to type %s ' % type, msg)
import sys
if sys.platform.startswith('java'):
from java.lang import String, Integer, Long, Float, Short, Double
varz = {
'java_string_int': String('1'),
'java_string_float': String('1.1'),
'java_string_hex': String('F00'),
'java_string_embedded_base': String('0xf00'),
'java_string_invalid': String('foobar'),
'java_integer': Integer(1),
'java_long': Long(1),
'java_short': Short(1),
'java_float': Float(1.1),
'java_double': Double(1.1)
}
else:
varz = {}
class MyObject:
def __init__(self, value):
self.value = value
def __int__(self):
return 42 / self.value
def __str__(self):
return 'MyObject'
['foo', 'subfoo', 'subfoo2', 'n']):
d[_v] = _id
from java.lang import Long, Integer, Short, Character, Byte, Boolean, Double, Float, String
from java.math import BigInteger
values = [
0, 0L, 0.0, 'c', "string", (), o, c, foo, subfoo, subfoo2, n, Object,
Class, Foo, SubFoo, C, SubFoo2, N, Integer,
Long(0),
Integer(0),
Short(0),
Character('c'),
Byte(0),
Boolean(0),
Double(0),
Float(0),
String("js"),
BigInteger("0")
]
def pp(v):
inst = d.get(v, None)
if inst is not None:
return inst
if hasattr(v, '__name__'):
return v.__name__
if isinstance(v, (String, Number, Character, Boolean)):
n = v.__class__.__name__
return "%s[%s]" % (n[n.rfind('.') + 1:], v)
def createNativeConstellationClass(classloader=None):
""" A Constellation class implemented natively in java using the ASM library. """
cw = ClassWriter(0)
cw.visit(52, Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL + Opcodes.ACC_SUPER, "my/ConstellationFast", None, "java/lang/Object", None)
fv = cw.visitField(Opcodes.ACC_PRIVATE + Opcodes.ACC_FINAL, "angle", "D", None, None)
fv.visitEnd()
fv = cw.visitField(Opcodes.ACC_PRIVATE + Opcodes.ACC_FINAL, "len1", "D", None, None)
fv.visitEnd()
fv = cw.visitField(Opcodes.ACC_PRIVATE + Opcodes.ACC_FINAL, "len2", "D", None, None)
fv.visitEnd()
fv = cw.visitField(Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL, "position", "Lmpicbg/models/Point;", None, None)
fv.visitEnd()
fv = cw.visitField(Opcodes.ACC_PRIVATE + Opcodes.ACC_FINAL, "len_ratio", "D", None, None)
fv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PUBLIC, "<init>", "(DDD[D)V", None, None)
mv.visitCode()
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitMethodInsn(Opcodes.INVOKESPECIAL, "java/lang/Object", "<init>", "()V")
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitVarInsn(Opcodes.DLOAD, 1)
mv.visitFieldInsn(Opcodes.PUTFIELD, "my/ConstellationFast", "angle", "D")
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitVarInsn(Opcodes.DLOAD, 3)
mv.visitFieldInsn(Opcodes.PUTFIELD, "my/ConstellationFast", "len1", "D")
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitVarInsn(Opcodes.DLOAD, 5)
mv.visitFieldInsn(Opcodes.PUTFIELD, "my/ConstellationFast", "len2", "D")
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitVarInsn(Opcodes.DLOAD, 3)
mv.visitVarInsn(Opcodes.DLOAD, 3)
mv.visitVarInsn(Opcodes.DLOAD, 5)
mv.visitInsn(Opcodes.DADD)
mv.visitInsn(Opcodes.DDIV)
mv.visitFieldInsn(Opcodes.PUTFIELD, "my/ConstellationFast", "len_ratio", "D")
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitTypeInsn(Opcodes.NEW, "mpicbg/models/Point")
mv.visitInsn(Opcodes.DUP)
mv.visitVarInsn(Opcodes.ALOAD, 7)
mv.visitMethodInsn(Opcodes.INVOKESPECIAL, "mpicbg/models/Point", "<init>", "([D)V")
mv.visitFieldInsn(Opcodes.PUTFIELD, "my/ConstellationFast", "position", "Lmpicbg/models/Point;")
mv.visitInsn(Opcodes.RETURN)
mv.visitMaxs(7, 8)
mv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL, "matches", "(Lmy/ConstellationFast;DD)Z", None, None)
mv.visitCode()
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "angle", "D")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "angle", "D")
mv.visitInsn(Opcodes.DSUB)
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "java/lang/Math", "abs", "(D)D")
mv.visitVarInsn(Opcodes.DLOAD, 2)
mv.visitInsn(Opcodes.DCMPG)
l0 = Label()
mv.visitJumpInsn(Opcodes.IFGE, l0)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "len1", "D")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "len1", "D")
mv.visitInsn(Opcodes.DSUB)
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "java/lang/Math", "abs", "(D)D")
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "len2", "D")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "len2", "D")
mv.visitInsn(Opcodes.DSUB)
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "java/lang/Math", "abs", "(D)D")
mv.visitInsn(Opcodes.DADD)
mv.visitVarInsn(Opcodes.DLOAD, 4)
mv.visitInsn(Opcodes.DCMPG)
mv.visitJumpInsn(Opcodes.IFGE, l0)
mv.visitInsn(Opcodes.ICONST_1)
l1 = Label()
mv.visitJumpInsn(Opcodes.GOTO, l1)
mv.visitLabel(l0)
mv.visitFrame(Opcodes.F_SAME, 0, None, 0, None)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitLabel(l1)
mv.visitFrame(Opcodes.F_SAME1, 0, None, 1, [Opcodes.INTEGER])
mv.visitInsn(Opcodes.IRETURN)
mv.visitMaxs(6, 6)
mv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL, "matchesScaleInvariant", "(Lmy/ConstellationFast;DD)Z", None, None)
mv.visitCode()
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "angle", "D")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "angle", "D")
mv.visitInsn(Opcodes.DSUB)
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "java/lang/Math", "abs", "(D)D")
mv.visitVarInsn(Opcodes.DLOAD, 2)
mv.visitInsn(Opcodes.DCMPG)
l0 = Label()
mv.visitJumpInsn(Opcodes.IFGE, l0)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "len_ratio", "D")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "len_ratio", "D")
mv.visitInsn(Opcodes.DSUB)
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "java/lang/Math", "abs", "(D)D")
mv.visitVarInsn(Opcodes.DLOAD, 4)
mv.visitInsn(Opcodes.DCMPG)
mv.visitJumpInsn(Opcodes.IFGE, l0)
mv.visitInsn(Opcodes.ICONST_1)
l1 = Label()
mv.visitJumpInsn(Opcodes.GOTO, l1)
mv.visitLabel(l0)
mv.visitFrame(Opcodes.F_SAME, 0, None, 0, None)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitLabel(l1)
mv.visitFrame(Opcodes.F_SAME1, 0, None, 1, [Opcodes.INTEGER])
mv.visitInsn(Opcodes.IRETURN)
mv.visitMaxs(4, 6)
mv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PRIVATE + Opcodes.ACC_FINAL + Opcodes.ACC_STATIC, "computeAngle", "(DDDDDDDD)D", None, None)
mv.visitCode()
mv.visitVarInsn(Opcodes.DLOAD, 6)
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "java/lang/Math", "sqrt", "(D)D")
mv.visitVarInsn(Opcodes.DSTORE, 16)
mv.visitVarInsn(Opcodes.DLOAD, 14)
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "java/lang/Math", "sqrt", "(D)D")
mv.visitVarInsn(Opcodes.DSTORE, 18)
mv.visitVarInsn(Opcodes.DLOAD, 0)
mv.visitVarInsn(Opcodes.DLOAD, 8)
mv.visitInsn(Opcodes.DMUL)
mv.visitVarInsn(Opcodes.DLOAD, 2)
mv.visitVarInsn(Opcodes.DLOAD, 10)
mv.visitInsn(Opcodes.DMUL)
mv.visitInsn(Opcodes.DADD)
mv.visitVarInsn(Opcodes.DLOAD, 4)
mv.visitVarInsn(Opcodes.DLOAD, 12)
mv.visitInsn(Opcodes.DMUL)
mv.visitInsn(Opcodes.DADD)
mv.visitVarInsn(Opcodes.DSTORE, 20)
mv.visitVarInsn(Opcodes.DLOAD, 20)
mv.visitVarInsn(Opcodes.DLOAD, 16)
mv.visitVarInsn(Opcodes.DLOAD, 18)
mv.visitInsn(Opcodes.DMUL)
mv.visitInsn(Opcodes.DDIV)
mv.visitVarInsn(Opcodes.DSTORE, 22)
mv.visitVarInsn(Opcodes.DLOAD, 22)
mv.visitInsn(Opcodes.DCONST_1)
mv.visitInsn(Opcodes.DCMPL)
l0 = Label()
mv.visitJumpInsn(Opcodes.IFLE, l0)
mv.visitInsn(Opcodes.DCONST_1)
l1 = Label()
mv.visitJumpInsn(Opcodes.GOTO, l1)
mv.visitLabel(l0)
mv.visitFrame(Opcodes.F_FULL, 12, [Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE], 0, [])
mv.visitVarInsn(Opcodes.DLOAD, 22)
mv.visitLdcInsn(Double("-1.0"))
mv.visitInsn(Opcodes.DCMPG)
l2 = Label()
mv.visitJumpInsn(Opcodes.IFGE, l2)
mv.visitLdcInsn(Double("-1.0"))
mv.visitJumpInsn(Opcodes.GOTO, l1)
mv.visitLabel(l2)
mv.visitFrame(Opcodes.F_SAME, 0, None, 0, None)
mv.visitVarInsn(Opcodes.DLOAD, 22)
mv.visitLabel(l1)
mv.visitFrame(Opcodes.F_SAME1, 0, None, 1, [Opcodes.DOUBLE])
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "java/lang/Math", "acos", "(D)D")
mv.visitInsn(Opcodes.DRETURN)
mv.visitMaxs(6, 24)
mv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL + Opcodes.ACC_STATIC, "fromSearch", "(Lnet/imglib2/RealLocalizable;Lnet/imglib2/RealLocalizable;DLnet/imglib2/RealLocalizable;D)Lmy/ConstellationFast;", None, None)
mv.visitCode()
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DSTORE, 7)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DSTORE, 9)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DSTORE, 11)
mv.visitTypeInsn(Opcodes.NEW, "my/ConstellationFast")
mv.visitInsn(Opcodes.DUP)
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DLOAD, 7)
mv.visitInsn(Opcodes.DSUB)
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DLOAD, 9)
mv.visitInsn(Opcodes.DSUB)
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DLOAD, 11)
mv.visitInsn(Opcodes.DSUB)
mv.visitVarInsn(Opcodes.DLOAD, 2)
mv.visitVarInsn(Opcodes.ALOAD, 4)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DLOAD, 7)
mv.visitInsn(Opcodes.DSUB)
mv.visitVarInsn(Opcodes.ALOAD, 4)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DLOAD, 9)
mv.visitInsn(Opcodes.DSUB)
mv.visitVarInsn(Opcodes.ALOAD, 4)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "net/imglib2/RealLocalizable", "getFloatPosition", "(I)F")
mv.visitInsn(Opcodes.F2D)
mv.visitVarInsn(Opcodes.DLOAD, 11)
mv.visitInsn(Opcodes.DSUB)
mv.visitVarInsn(Opcodes.DLOAD, 5)
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "my/ConstellationFast", "computeAngle", "(DDDDDDDD)D")
mv.visitVarInsn(Opcodes.DLOAD, 2)
mv.visitVarInsn(Opcodes.DLOAD, 5)
mv.visitInsn(Opcodes.ICONST_3)
mv.visitIntInsn(Opcodes.NEWARRAY, Opcodes.T_DOUBLE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitVarInsn(Opcodes.DLOAD, 7)
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitVarInsn(Opcodes.DLOAD, 9)
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitVarInsn(Opcodes.DLOAD, 11)
mv.visitInsn(Opcodes.DASTORE)
mv.visitMethodInsn(Opcodes.INVOKESPECIAL, "my/ConstellationFast", "<init>", "(DDD[D)V")
mv.visitInsn(Opcodes.ARETURN)
mv.visitMaxs(18, 13)
mv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL + Opcodes.ACC_STATIC, "fromRow", "(Ljava/util/List;)Lmy/ConstellationFast;", "(Ljava/util/List<Ljava/lang/Double;>;)Lmy/ConstellationFast;", None)
mv.visitCode()
mv.visitTypeInsn(Opcodes.NEW, "my/ConstellationFast")
mv.visitInsn(Opcodes.DUP)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/List", "get", "(I)Ljava/lang/Object;")
mv.visitTypeInsn(Opcodes.CHECKCAST, "java/lang/Double")
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "java/lang/Double", "doubleValue", "()D")
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/List", "get", "(I)Ljava/lang/Object;")
mv.visitTypeInsn(Opcodes.CHECKCAST, "java/lang/Double")
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "java/lang/Double", "doubleValue", "()D")
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/List", "get", "(I)Ljava/lang/Object;")
mv.visitTypeInsn(Opcodes.CHECKCAST, "java/lang/Double")
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "java/lang/Double", "doubleValue", "()D")
mv.visitInsn(Opcodes.ICONST_3)
mv.visitIntInsn(Opcodes.NEWARRAY, Opcodes.T_DOUBLE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_3)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/List", "get", "(I)Ljava/lang/Object;")
mv.visitTypeInsn(Opcodes.CHECKCAST, "java/lang/Double")
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "java/lang/Double", "doubleValue", "()D")
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_4)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/List", "get", "(I)Ljava/lang/Object;")
mv.visitTypeInsn(Opcodes.CHECKCAST, "java/lang/Double")
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "java/lang/Double", "doubleValue", "()D")
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitInsn(Opcodes.ICONST_5)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/List", "get", "(I)Ljava/lang/Object;")
mv.visitTypeInsn(Opcodes.CHECKCAST, "java/lang/Double")
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "java/lang/Double", "doubleValue", "()D")
mv.visitInsn(Opcodes.DASTORE)
mv.visitMethodInsn(Opcodes.INVOKESPECIAL, "my/ConstellationFast", "<init>", "(DDD[D)V")
mv.visitInsn(Opcodes.ARETURN)
mv.visitMaxs(13, 1)
mv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL, "asRow", "()[D", None, None)
mv.visitCode()
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "position", "Lmpicbg/models/Point;")
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "mpicbg/models/Point", "getW", "()[D")
mv.visitVarInsn(Opcodes.ASTORE, 1)
mv.visitIntInsn(Opcodes.BIPUSH, 6)
mv.visitIntInsn(Opcodes.NEWARRAY, Opcodes.T_DOUBLE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "angle", "D")
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "len1", "D")
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "len2", "D")
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_3)
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitInsn(Opcodes.DALOAD)
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_4)
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitInsn(Opcodes.DALOAD)
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_5)
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitInsn(Opcodes.DALOAD)
mv.visitInsn(Opcodes.DASTORE)
mv.visitInsn(Opcodes.ARETURN)
mv.visitMaxs(5, 2)
mv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL + Opcodes.ACC_STATIC, "csvHeader", "()[Ljava/lang/String;", None, None)
mv.visitCode()
mv.visitIntInsn(Opcodes.BIPUSH, 6)
mv.visitTypeInsn(Opcodes.ANEWARRAY, "java/lang/String")
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitLdcInsn("angle")
mv.visitInsn(Opcodes.AASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitLdcInsn("len1")
mv.visitInsn(Opcodes.AASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitLdcInsn("len2")
mv.visitInsn(Opcodes.AASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_3)
mv.visitLdcInsn("x")
mv.visitInsn(Opcodes.AASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_4)
mv.visitLdcInsn("y")
mv.visitInsn(Opcodes.AASTORE)
mv.visitInsn(Opcodes.DUP)
mv.visitInsn(Opcodes.ICONST_5)
mv.visitLdcInsn("z")
mv.visitInsn(Opcodes.AASTORE)
mv.visitInsn(Opcodes.ARETURN)
mv.visitMaxs(4, 0)
mv.visitEnd()
mv = cw.visitMethod(Opcodes.ACC_PUBLIC + Opcodes.ACC_FINAL + Opcodes.ACC_STATIC, "extractFeatures", "(Ljava/util/List;Lnet/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree;DDD)Ljava/util/List;", "(Ljava/util/List<Lnet/imglib2/RealLocalizable;>;Lnet/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree<Lnet/imglib2/RealLocalizable;>;DDD)Ljava/util/List<Lmy/ConstellationFast;>;", None)
mv.visitCode()
mv.visitTypeInsn(Opcodes.NEW, "java/util/ArrayList")
mv.visitInsn(Opcodes.DUP)
mv.visitMethodInsn(Opcodes.INVOKESPECIAL, "java/util/ArrayList", "<init>", "()V")
mv.visitVarInsn(Opcodes.ASTORE, 8)
mv.visitVarInsn(Opcodes.ALOAD, 0)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/List", "iterator", "()Ljava/util/Iterator;")
mv.visitVarInsn(Opcodes.ASTORE, 9)
l0 = Label()
mv.visitLabel(l0)
mv.visitFrame(Opcodes.F_APPEND,2, ["java/util/List", "java/util/Iterator"], 0, None)
mv.visitVarInsn(Opcodes.ALOAD, 9)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/Iterator", "hasNext", "()Z")
l1 = Label()
mv.visitJumpInsn(Opcodes.IFEQ, l1)
mv.visitVarInsn(Opcodes.ALOAD, 9)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/Iterator", "next", "()Ljava/lang/Object;")
mv.visitTypeInsn(Opcodes.CHECKCAST, "net/imglib2/RealLocalizable")
mv.visitVarInsn(Opcodes.ASTORE, 10)
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitVarInsn(Opcodes.ALOAD, 10)
mv.visitVarInsn(Opcodes.DLOAD, 2)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "net/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree", "search", "(Lnet/imglib2/RealLocalizable;DZ)V")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "net/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree", "numNeighbors", "()I")
mv.visitVarInsn(Opcodes.ISTORE, 11)
mv.visitVarInsn(Opcodes.ILOAD, 11)
mv.visitInsn(Opcodes.ICONST_2)
l2 = Label()
mv.visitJumpInsn(Opcodes.IF_ICMPLE, l2)
mv.visitInsn(Opcodes.ICONST_0)
mv.visitVarInsn(Opcodes.ISTORE, 12)
mv.visitVarInsn(Opcodes.ILOAD, 11)
mv.visitInsn(Opcodes.ICONST_2)
mv.visitInsn(Opcodes.ISUB)
mv.visitVarInsn(Opcodes.ISTORE, 13)
mv.visitVarInsn(Opcodes.ILOAD, 11)
mv.visitInsn(Opcodes.ICONST_1)
mv.visitInsn(Opcodes.ISUB)
mv.visitVarInsn(Opcodes.ISTORE, 14)
l3 = Label()
mv.visitLabel(l3)
mv.visitFrame(Opcodes.F_FULL, 12, ["java/util/List", "net/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree", Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, "java/util/List", "java/util/Iterator", "net/imglib2/RealLocalizable", Opcodes.INTEGER, Opcodes.INTEGER, Opcodes.INTEGER, Opcodes.INTEGER], 0, [])
mv.visitVarInsn(Opcodes.ILOAD, 13)
mv.visitJumpInsn(Opcodes.IFLE, l2)
mv.visitVarInsn(Opcodes.DLOAD, 6)
mv.visitVarInsn(Opcodes.ILOAD, 12)
mv.visitInsn(Opcodes.I2D)
mv.visitInsn(Opcodes.DCMPL)
l4 = Label()
mv.visitJumpInsn(Opcodes.IFNE, l4)
mv.visitJumpInsn(Opcodes.GOTO, l2)
mv.visitLabel(l4)
mv.visitFrame(Opcodes.F_SAME, 0, None, 0, None)
mv.visitVarInsn(Opcodes.ALOAD, 10)
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitVarInsn(Opcodes.ILOAD, 13)
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "net/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree", "getPosition", "(I)Lnet/imglib2/RealLocalizable;")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitVarInsn(Opcodes.ILOAD, 13)
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "net/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree", "getSquareDistance", "(I)D")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitVarInsn(Opcodes.ILOAD, 14)
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "net/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree", "getPosition", "(I)Lnet/imglib2/RealLocalizable;")
mv.visitVarInsn(Opcodes.ALOAD, 1)
mv.visitVarInsn(Opcodes.ILOAD, 14)
mv.visitMethodInsn(Opcodes.INVOKEVIRTUAL, "net/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree", "getSquareDistance", "(I)D")
mv.visitMethodInsn(Opcodes.INVOKESTATIC, "my/ConstellationFast", "fromSearch", "(Lnet/imglib2/RealLocalizable;Lnet/imglib2/RealLocalizable;DLnet/imglib2/RealLocalizable;D)Lmy/ConstellationFast;")
mv.visitVarInsn(Opcodes.ASTORE, 15)
mv.visitVarInsn(Opcodes.ALOAD, 15)
mv.visitFieldInsn(Opcodes.GETFIELD, "my/ConstellationFast", "angle", "D")
mv.visitVarInsn(Opcodes.DLOAD, 4)
mv.visitInsn(Opcodes.DCMPL)
l5 = Label()
mv.visitJumpInsn(Opcodes.IFLT, l5)
mv.visitIincInsn(12, 1)
mv.visitVarInsn(Opcodes.ALOAD, 8)
mv.visitVarInsn(Opcodes.ALOAD, 15)
mv.visitMethodInsn(Opcodes.INVOKEINTERFACE, "java/util/List", "add", "(Ljava/lang/Object;)Z")
mv.visitInsn(Opcodes.POP)
mv.visitLabel(l5)
mv.visitFrame(Opcodes.F_SAME, 0, None, 0, None)
mv.visitIincInsn(13, -1)
mv.visitIincInsn(14, -1)
mv.visitJumpInsn(Opcodes.GOTO, l3)
mv.visitLabel(l2)
mv.visitFrame(Opcodes.F_FULL, 7, ["java/util/List", "net/imglib2/neighborsearch/RadiusNeighborSearchOnKDTree", Opcodes.DOUBLE, Opcodes.DOUBLE, Opcodes.DOUBLE, "java/util/List", "java/util/Iterator"], 0, [])
mv.visitJumpInsn(Opcodes.GOTO, l0)
mv.visitLabel(l1)
mv.visitFrame(Opcodes.F_CHOP,1, None, 0, None)
mv.visitVarInsn(Opcodes.ALOAD, 8)
mv.visitInsn(Opcodes.ARETURN)
mv.visitMaxs(7, 16)
mv.visitEnd()
cw.visitEnd()
if not classloader:
classloader = CustomClassLoader()
return classloader.defineClass("my/ConstellationFast", cw.toByteArray())
