def set_settings(self):
self.settings = JPanel()
layout = GroupLayout(self.settings)
self.settings.setLayout(layout)
layout.setAutoCreateGaps(True)
load_file_button = JButton("Load JSON File")
load_file_button.setActionCommand("load")
load_file_button.addActionListener(SettingsAction(self, load_file_button, None))
save_file_button = JButton("Save JSON File")
save_file_button.setActionCommand("save")
save_file_button.addActionListener(SettingsAction(None, save_file_button, self.tabbed_panes))
horizontal_group1 = layout.createParallelGroup(GroupLayout.Alignment.LEADING)
horizontal_group1.addComponent(load_file_button)
horizontal_group1.addComponent(save_file_button)
horizontal_group = layout.createSequentialGroup()
horizontal_group.addGroup(horizontal_group1)
layout.setHorizontalGroup(horizontal_group)
vertical_group1 = layout.createParallelGroup(GroupLayout.Alignment.BASELINE)
vertical_group1.addComponent(load_file_button)
vertical_group2 = layout.createParallelGroup(GroupLayout.Alignment.BASELINE)
vertical_group2.addComponent(save_file_button)
vertical_group = layout.createSequentialGroup()
vertical_group.addGroup(vertical_group1)
vertical_group.addGroup(vertical_group2)
layout.setVerticalGroup(vertical_group)
def __init__(self, frame, chart, pingFun):
JDialog(frame)
self.setTitle("Chart Settings")
self.setModal(True)
self.pingFun = pingFun
pane = self.getRootPane().getContentPane()
pane.setLayout(GridLayout(7, 2))
pane.add(JLabel("Marker color"))
self.markerPanel = self.createColorPanel(chart.markerColor, pane)
pane.add(JLabel("Positive selection color"))
self.posPanel = self.createColorPanel(chart.posColor, pane)
pane.add(JLabel("Neutral color"))
self.neuPanel = self.createColorPanel(chart.neuColor, pane)
pane.add(JLabel("Balancing selection color "))
self.balPanel = self.createColorPanel(chart.balColor, pane)
self.add(JLabel("Label candidate selected loci"))
self.selLabel = JCheckBox()
self.selLabel.setSelected(chart.labelSelected)
self.add(self.selLabel)
self.add(JLabel("Label candidate neutral loci"))
self.neuLabel = JCheckBox()
self.neuLabel.setSelected(chart.labelNeutral)
self.add(self.neuLabel)
change = JButton("Change")
change.setActionCommand("Change")
change.addActionListener(self)
pane.add(change)
exit = JButton("Exit")
exit.setActionCommand("Exit")
exit.addActionListener(self)
pane.add(exit)
self.pack()
def getControlPanel():
global controlPanel
controlPanel = JPanel()
controlPanel.setLayout(BoxLayout(controlPanel, BoxLayout.Y_AXIS))
for row in keyLayout:
rowPanel = JPanel()
rowPanel.setLayout(BoxLayout(rowPanel, BoxLayout.X_AXIS))
controlPanel.add(rowPanel)
for key in row:
button = JButton(key[0], actionPerformed=handleKeyButton)
button.setActionCommand(key[1])
rowPanel.add(button)
global terminalResult
terminalResult = JTextArea()
scroller = JScrollPane(terminalResult)
terminalResult.setLineWrap(True)
scroller.setVerticalScrollBarPolicy(ScrollPaneConstants.VERTICAL_SCROLLBAR_ALWAYS)
scroller.setHorizontalScrollBarPolicy(ScrollPaneConstants.HORIZONTAL_SCROLLBAR_NEVER)
controlPanel.add(scroller)
global terminalInput
termInputPanel = JPanel()
termInputPanel.setLayout(BoxLayout(termInputPanel, BoxLayout.X_AXIS))
termInputLabel = JLabel("Command")
termInputPanel.add(termInputLabel)
terminalInput = JTextField(actionPerformed=handleTerminalInput)
minimumSize = terminalInput.getMinimumSize()
maximumSize = terminalInput.getMaximumSize()
terminalInput.setMaximumSize(Dimension(maximumSize.width, minimumSize.height))
termInputPanel.add(terminalInput)
controlPanel.add(termInputPanel)
return controlPanel
def __init__(self, frame, what, entries, pingFun):
JDialog(frame, what)
self.frame = frame
self.entries = entries
self.pingFun = pingFun
pane = self.getRootPane().getContentPane()
self.ent_pane, self.ent_list, self.ent = self.createList(entries)
pane.add(self.ent_pane, BorderLayout.WEST)
actionPanel = JPanel()
actionPanel.setLayout(GridLayout(20, 1))
self.text = JTextField(20)
actionPanel.add(self.text)
change = JButton('Change')
change.setActionCommand('Change')
change.addActionListener(self)
actionPanel.add(change)
actionPanel.add(JLabel(''))
quit = JButton('Exit')
quit.setActionCommand('Exit')
quit.addActionListener(self)
actionPanel.add(quit)
actionPanel.add(JLabel(''))
pane.add(actionPanel, BorderLayout.CENTER)
self.pack()
def __init__(self, frame, what, entries, pingFun):
JDialog(frame, what)
self.frame = frame
self.entries = entries
self.pingFun = pingFun
pane = self.getRootPane().getContentPane()
self.ent_pane, self.ent_list, self.ent = self.createList(entries)
pane.add(self.ent_pane, BorderLayout.WEST)
actionPanel = JPanel()
actionPanel.setLayout(GridLayout(20, 1))
self.text = JTextField(20)
actionPanel.add(self.text)
change = JButton('Change')
change.setActionCommand('Change')
change.addActionListener(self)
actionPanel.add(change)
actionPanel.add(JLabel(''))
quit = JButton('Exit')
quit.setActionCommand('Exit')
quit.addActionListener(self)
actionPanel.add(quit)
actionPanel.add(JLabel(''))
pane.add(actionPanel, BorderLayout.CENTER)
self.pack()
def createButton(self, text, command):
"""Generate a new button with a given text and command"""
button = JButton(text)
button.setAlignmentX(Component.CENTER_ALIGNMENT)
button.setActionCommand(command)
button.addActionListener(self._button_listener)
return button
def __init__(self, frame, chart, pingFun):
JDialog(frame)
self.setTitle('Chart Settings')
self.setModal(True)
self.pingFun = pingFun
pane = self.getRootPane().getContentPane()
pane.setLayout(GridLayout(7, 2))
pane.add(JLabel('Marker color'))
self.markerPanel = self.createColorPanel(chart.markerColor, pane)
pane.add(JLabel('Positive selection color'))
self.posPanel = self.createColorPanel(chart.posColor, pane)
pane.add(JLabel('Neutral color'))
self.neuPanel = self.createColorPanel(chart.neuColor, pane)
pane.add(JLabel('Balancing selection color '))
self.balPanel = self.createColorPanel(chart.balColor, pane)
self.add(JLabel('Label candidate selected loci'))
self.selLabel = JCheckBox()
self.selLabel.setSelected(chart.labelSelected)
self.add(self.selLabel)
self.add(JLabel('Label candidate neutral loci'))
self.neuLabel = JCheckBox()
self.neuLabel.setSelected(chart.labelNeutral)
self.add(self.neuLabel)
change = JButton('Change')
change.setActionCommand('Change')
change.addActionListener(self)
pane.add(change)
exit = JButton('Exit')
exit.setActionCommand('Exit')
exit.addActionListener(self)
pane.add(exit)
self.pack()
def createButton(self, text, command, tooltip):
"""Create a new button with the given text and command"""
button = JButton(text)
button.setAlignmentX(Component.CENTER_ALIGNMENT)
button.setActionCommand(command)
button.addActionListener(self._button_listener)
button.setToolTipText(tooltip)
return button
def add_button(self, text, action):
index = len(self.actions)
name = "button%i" % index
button = JButton(text)
self.panel.add(button)
button.setActionCommand(name)
button.addActionListener(self)
self.actions[name] = action
return button
def add_button(self, text, action):
index = len(self.actions)
name = "button%i" % index
button = JButton(text)
self.panel.add(button)
button.setActionCommand(name)
button.addActionListener(self)
self.actions[name] = action
return button
def __init__(self, frame, what, all, removed, pingFun):
JDialog.__init__(self, frame, what)
self.frame = frame
self.all = all
self.removed = removed
self.pingFun = pingFun
pane = self.getRootPane().getContentPane()
self.sel_pane, self.sel_list, self.sel = self.createList(all)
pane.add(self.sel_pane, BorderLayout.WEST)
button_panel = JPanel()
button_panel.setLayout(GridLayout(8, 1))
button_panel.add(JLabel('<-- Selected'))
button_panel.add(JLabel('Removed -->'))
select = JButton('Select')
select.setActionCommand('Select')
select.addActionListener(self)
button_panel.add(select)
button_panel.add(JLabel(''))
restrict = JButton('Remove')
restrict.setActionCommand('Remove')
restrict.addActionListener(self)
button_panel.add(restrict)
button_panel.add(JLabel(''))
quit = JButton('Exit')
quit.setActionCommand('Exit')
quit.addActionListener(self)
button_panel.add(quit)
button_panel.add(JLabel(''))
pane.add(button_panel, BorderLayout.CENTER)
self.rem_pane, self.rem_list, self.rem = self.createList(removed)
pane.add(self.rem_pane, BorderLayout.EAST)
warning_panel = JPanel()
warning_panel.add(
JLabel(
"Warning: Removing/adding loci or pops might take some time!"))
pane.add(warning_panel, BorderLayout.NORTH)
self.pack()
def __init__(self, frame, what, all, removed, pingFun):
JDialog.__init__(self,frame, what)
self.frame = frame
self.all = all
self.removed = removed
self.pingFun = pingFun
pane = self.getRootPane().getContentPane()
self.sel_pane, self.sel_list, self.sel = self.createList(all)
pane.add(self.sel_pane, BorderLayout.WEST)
button_panel = JPanel()
button_panel.setLayout(GridLayout(8,1))
button_panel.add(JLabel('<-- Selected'))
button_panel.add(JLabel('Removed -->'))
select = JButton('Select')
select.setActionCommand('Select')
select.addActionListener(self)
button_panel.add(select)
button_panel.add(JLabel(''))
restrict = JButton('Remove')
restrict.setActionCommand('Remove')
restrict.addActionListener(self)
button_panel.add(restrict)
button_panel.add(JLabel(''))
quit = JButton('Exit')
quit.setActionCommand('Exit')
quit.addActionListener(self)
button_panel.add(quit)
button_panel.add(JLabel(''))
pane.add(button_panel, BorderLayout.CENTER)
self.rem_pane, self.rem_list, self.rem = self.createList(removed)
pane.add(self.rem_pane, BorderLayout.EAST)
warning_panel = JPanel()
warning_panel.add(JLabel("Warning: Removing/adding loci or pops might take some time!"))
pane.add(warning_panel, BorderLayout.NORTH)
self.pack()
def __init__(self, frame, chart, lociNames, pv,
ci, confLines, locusFst, isDominant, fdr):
JDialog(frame)
self.chart = chart
self.frame = frame
self.confLines = confLines
self.isDominant = isDominant
self.fdr = fdr
pane = self.getRootPane().getContentPane()
pane.setLayout(BorderLayout())
self.initTable(lociNames, pv, ci, locusFst)
scrollPane = JScrollPane(self.table)
osName = System.getProperty('os.name').lower()
if not System.getProperty('java.specification.version')[-1] == '5':
self.table.setFillsViewportHeight(True)
pane.add(scrollPane, BorderLayout.CENTER)
buttonPane = JPanel()
sll = JButton('Save loci list')
sll.addActionListener(self)
sll.setActionCommand('SLL')
buttonPane.add(sll)
sci = JButton('Save confidence intervals')
sci.addActionListener(self)
sci.setActionCommand('SCI')
buttonPane.add(sci)
close = JButton('Close')
close.addActionListener(self)
close.setActionCommand('Close')
buttonPane.add(close)
pane.add(buttonPane, BorderLayout.PAGE_END)
self.pack()
def __init__(self, frame, chart, lociNames, pv, ci, confLines, locusFst,
isDominant, fdr):
JDialog(frame)
self.chart = chart
self.frame = frame
self.confLines = confLines
self.isDominant = isDominant
self.fdr = fdr
pane = self.getRootPane().getContentPane()
pane.setLayout(BorderLayout())
self.initTable(lociNames, pv, ci, locusFst)
scrollPane = JScrollPane(self.table)
osName = System.getProperty('os.name').lower()
if not System.getProperty('java.specification.version')[-1] == '5':
self.table.setFillsViewportHeight(True)
pane.add(scrollPane, BorderLayout.CENTER)
buttonPane = JPanel()
sll = JButton('Save loci list')
sll.addActionListener(self)
sll.setActionCommand('SLL')
buttonPane.add(sll)
sci = JButton('Save confidence intervals')
sci.addActionListener(self)
sci.setActionCommand('SCI')
buttonPane.add(sci)
close = JButton('Close')
close.addActionListener(self)
close.setActionCommand('Close')
buttonPane.add(close)
pane.add(buttonPane, BorderLayout.PAGE_END)
self.pack()
def initComponents(self):
TabbedPane1 = JTabbedPane()
GeneratorScrollPane = JScrollPane()
GeneratorPanel = JPanel()
jlbl1 = JLabel()
jlbl2 = JLabel()
spanePayloadList = JScrollPane()
self.listPayloads = JList()
pastePayloadButton = JButton(
actionPerformed=self.pastePayloadButtonAction)
removePayloadButton = JButton(
actionPerformed=self.removePayloadButtonAction)
clearPayloadButton = JButton(
actionPerformed=self.clearPayloadButtonAction)
self.textNewPayload = JTextField()
addPayloadButton = JButton(actionPerformed=self.addPayloadButtonAction)
jSeparator1 = JSeparator()
jlbl3 = JLabel()
jlbl4 = JLabel()
self.chkGeneral = JCheckBox()
self.chkMAXDB = JCheckBox()
self.chkMSSQL = JCheckBox()
self.chkMSAccess = JCheckBox()
self.chkPostgres = JCheckBox()
self.chkOracle = JCheckBox()
self.chkSqlite = JCheckBox()
self.chkMysql = JCheckBox()
jlbl5 = JLabel()
toClipboardButton = JButton(
actionPerformed=self.toClipboardButtonAction)
toFileButton = JButton(actionPerformed=self.toFileButtonAction)
ProcessorScrollPane = JScrollPane()
ProcessorPanel = JPanel()
jLabel1 = JLabel()
self.comboProcessorTech = JComboBox()
jSeparator2 = JSeparator()
jLabel2 = JLabel()
jLabel3 = JLabel()
jScrollPane1 = JScrollPane()
self.textPlainPayload = JTextArea()
jLabel4 = JLabel()
jScrollPane2 = JScrollPane()
self.textTamperedPayload = JTextArea()
tamperPayloadButton = JButton(
actionPerformed=self.tamperPayloadButtonAction)
jlbl1.setForeground(Color(255, 102, 51))
jlbl1.setFont(Font(jlbl1.getFont().toString(), 1, 14))
jlbl1.setText("User-Defiend Payloads")
jlbl2.setText(
"This payload type lets you configure a simple list of strings that are used as payloads."
)
spanePayloadList.setViewportView(self.listPayloads)
self.extender.PayloadList = [
"%", "'", "\"\"", "''", "'", "'--", "; waitfor delay '0:30:0'--",
"1;waitfor delay '0:30:0'--", "(\",)')(,(("
]
self.listPayloads.setListData(self.extender.PayloadList)
pastePayloadButton.setText("Paste")
pastePayloadButton.setActionCommand("pastePayloadButton")
# pastePayloadButton.addActionListener()
removePayloadButton.setText("Remove")
clearPayloadButton.setText("Clear")
self.textNewPayload.setToolTipText("")
addPayloadButton.setText("Add")
jlbl3.setForeground(Color(255, 102, 51))
jlbl3.setFont(Font(jlbl3.getFont().toString(), 1, 14))
jlbl3.setText("Tamper Techniques")
jlbl4.setText(
"You can select the techniques that you want to perform processing tasks on each user-defined payload"
)
self.chkGeneral.setText("General")
self.chkGeneral.setSelected(True)
self.chkMAXDB.setText("SAP MAX DB")
self.chkMSSQL.setText("MS SQL Server")
self.chkMSAccess.setText("MS Access")
self.chkPostgres.setText("Postgres SQL")
self.chkOracle.setText("Oracle")
self.chkSqlite.setText("Sqlite")
self.chkMysql.setText("MySql")
jlbl5.setText("[?] Save the Generated/Tampered Payloads to :")
toClipboardButton.setText("Clipboard")
toFileButton.setText("File")
GeneratorPanelLayout = GroupLayout(GeneratorPanel)
GeneratorPanel.setLayout(GeneratorPanelLayout)
GeneratorPanelLayout.setHorizontalGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).
addGroup(GeneratorPanelLayout.createSequentialGroup(
).addContainerGap().addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.TRAILING).addComponent(
jlbl2, GroupLayout.DEFAULT_SIZE,
GroupLayout.DEFAULT_SIZE,
Short.MAX_VALUE).addComponent(
jlbl4, GroupLayout.Alignment.LEADING,
GroupLayout.DEFAULT_SIZE, GroupLayout.DEFAULT_SIZE,
Short.MAX_VALUE).addComponent(
jSeparator1, GroupLayout.Alignment.LEADING).
addGroup(GeneratorPanelLayout.createSequentialGroup().addGap(
6, 6, 6).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addGroup(
GeneratorPanelLayout.createSequentialGroup(
).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING,
False).addComponent(
removePayloadButton,
GroupLayout.DEFAULT_SIZE,
GroupLayout.DEFAULT_SIZE,
Short.MAX_VALUE).addComponent(
clearPayloadButton,
GroupLayout.DEFAULT_SIZE,
GroupLayout.DEFAULT_SIZE,
Short.MAX_VALUE).
addComponent(pastePayloadButton,
GroupLayout.DEFAULT_SIZE,
GroupLayout.DEFAULT_SIZE,
Short.MAX_VALUE).addComponent(
addPayloadButton,
GroupLayout.DEFAULT_SIZE,
GroupLayout.DEFAULT_SIZE,
Short.MAX_VALUE)).
addGap(21, 21, 21).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).
addComponent(
self.textNewPayload).addComponent(
spanePayloadList))).addComponent(
jlbl1).addComponent(jlbl3).
addGroup(GeneratorPanelLayout.createSequentialGroup(
).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(
self.chkGeneral).addComponent(
self.chkMSSQL)
).addGap(18, 18, 18).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(
self.chkPostgres).addComponent(
self.chkMAXDB)
).addGap(18, 18, 18).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(
self.chkMSAccess).addComponent(
self.chkOracle)
).addGap(18, 18, 18).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(
self.chkSqlite).addComponent(self.chkMysql)
)).addGroup(GeneratorPanelLayout.createSequentialGroup(
).addComponent(jlbl5).addPreferredGap(
LayoutStyle.ComponentPlacement.
UNRELATED).addComponent(toClipboardButton).addGap(
18, 18,
18).addComponent(toFileButton,
GroupLayout.PREFERRED_SIZE,
97, GroupLayout.PREFERRED_SIZE
))))).addContainerGap()))
GeneratorPanelLayout.setVerticalGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).
addGroup(GeneratorPanelLayout.createSequentialGroup(
).addContainerGap().addComponent(jlbl1).addPreferredGap(
LayoutStyle.ComponentPlacement.RELATED).addComponent(
jlbl2, GroupLayout.PREFERRED_SIZE, 21,
GroupLayout.PREFERRED_SIZE).addGap(18, 18, 18).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(
spanePayloadList, GroupLayout.PREFERRED_SIZE,
GroupLayout.DEFAULT_SIZE,
GroupLayout.PREFERRED_SIZE).
addGroup(GeneratorPanelLayout.createSequentialGroup(
).addComponent(pastePayloadButton).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED
).addComponent(removePayloadButton).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED).
addComponent(clearPayloadButton))).
addPreferredGap(
LayoutStyle.ComponentPlacement.RELATED).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.BASELINE).addComponent(
self.textNewPayload,
GroupLayout.PREFERRED_SIZE,
GroupLayout.DEFAULT_SIZE,
GroupLayout.PREFERRED_SIZE).
addComponent(addPayloadButton)).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED).
addComponent(jSeparator1, GroupLayout.PREFERRED_SIZE, 10,
GroupLayout.PREFERRED_SIZE).addPreferredGap(
LayoutStyle.ComponentPlacement.RELATED).
addComponent(jlbl3).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED
).addComponent(jlbl4).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.BASELINE).addComponent(
self.chkGeneral).addComponent(
self.chkMAXDB).addComponent(
self.chkOracle).addComponent(
self.chkSqlite)).
addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.BASELINE).addComponent(
self.chkMSSQL).addComponent(
self.chkPostgres).addComponent(
self.chkMSAccess).addComponent(
self.chkMysql)
).addGap(18, 18, 18).addGroup(
GeneratorPanelLayout.createParallelGroup(
GroupLayout.Alignment.BASELINE).addComponent(
jlbl5).addComponent(toClipboardButton).
addComponent(toFileButton)).addGap(20, 20, 20)))
GeneratorScrollPane.setViewportView(GeneratorPanel)
TabbedPane1.addTab("Generator", GeneratorScrollPane)
for item in self.extender.getTamperFuncsName():
self.comboProcessorTech.addItem(item)
self.comboProcessorTech.setSelectedIndex(0)
jLabel1.setText("Processor Technique :")
jLabel2.setText(
"Modify Plain Payloads based on the selected Processor Technique. Write one payload per line."
)
jLabel3.setText("Plain Payloads:")
self.textPlainPayload.setColumns(20)
self.textPlainPayload.setRows(5)
jScrollPane1.setViewportView(self.textPlainPayload)
jLabel4.setText("Tampered Payloads:")
self.textTamperedPayload.setColumns(20)
self.textTamperedPayload.setRows(5)
jScrollPane2.setViewportView(self.textTamperedPayload)
tamperPayloadButton.setText("Tamper Payload")
ProcessorPanelLayout = GroupLayout(ProcessorPanel)
ProcessorPanel.setLayout(ProcessorPanelLayout)
ProcessorPanelLayout.setHorizontalGroup(
ProcessorPanelLayout.
createParallelGroup(GroupLayout.Alignment.LEADING).addGroup(
GroupLayout.Alignment.TRAILING,
ProcessorPanelLayout.createSequentialGroup().addContainerGap(
GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE).addComponent(
tamperPayloadButton).addContainerGap(
GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
).addGroup(ProcessorPanelLayout.createSequentialGroup(
).addContainerGap().addGroup(
ProcessorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(jSeparator2).
addComponent(jScrollPane1).addComponent(jScrollPane2).addGroup(
ProcessorPanelLayout.createSequentialGroup().addGroup(
ProcessorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(
jLabel3).addComponent(jLabel4).addGroup(
ProcessorPanelLayout.createSequentialGroup(
).addComponent(jLabel1).addPreferredGap(
LayoutStyle.ComponentPlacement.
UNRELATED).addComponent(
self.comboProcessorTech,
GroupLayout.PREFERRED_SIZE, 286,
GroupLayout.PREFERRED_SIZE)).
addComponent(jLabel2)).addGap(
0, 78, Short.MAX_VALUE))).addContainerGap()))
ProcessorPanelLayout.setVerticalGroup(
ProcessorPanelLayout.createParallelGroup(
GroupLayout.Alignment.LEADING).addGroup(
ProcessorPanelLayout.createSequentialGroup().addGap(
33, 33, 33).addGroup(
ProcessorPanelLayout.createParallelGroup(
GroupLayout.Alignment.BASELINE).
addComponent(jLabel1).addComponent(
self.comboProcessorTech,
GroupLayout.PREFERRED_SIZE,
GroupLayout.DEFAULT_SIZE,
GroupLayout.PREFERRED_SIZE)).addGap(
18, 18, 18).addComponent(
jSeparator2,
GroupLayout.PREFERRED_SIZE, 10,
GroupLayout.PREFERRED_SIZE).addGap(
12, 12,
12).addComponent(jLabel2).addGap(
18, 18, 18).
addComponent(jLabel3).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED).addComponent(
jScrollPane1, GroupLayout.PREFERRED_SIZE,
GroupLayout.DEFAULT_SIZE,
GroupLayout.PREFERRED_SIZE).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED).
addComponent(jLabel4).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED).addComponent(
jScrollPane2, GroupLayout.PREFERRED_SIZE,
GroupLayout.DEFAULT_SIZE,
GroupLayout.PREFERRED_SIZE).addPreferredGap(
LayoutStyle.ComponentPlacement.UNRELATED).
addComponent(tamperPayloadButton).addGap(36, 36, 36)))
ProcessorScrollPane.setViewportView(ProcessorPanel)
TabbedPane1.addTab("Processor", ProcessorScrollPane)
self.mainPanel = JPanel()
layout = GroupLayout(self.mainPanel)
self.mainPanel.setLayout(layout)
layout.setHorizontalGroup(
layout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(
TabbedPane1, GroupLayout.DEFAULT_SIZE, 701,
Short.MAX_VALUE))
layout.setVerticalGroup(
layout.createParallelGroup(
GroupLayout.Alignment.LEADING).addComponent(TabbedPane1))
TabbedPane1.getAccessibleContext().setAccessibleName("Generator")
def __init__(self, menuHandles, manager, isDominant, systemPanel, isTemporal=False):
self.systemPanel = systemPanel
self.knownPops = 0
self.ignoreChanges = True
JPanel()
self.menuHandles = menuHandles
self.isDominant = isDominant
self.isTemporal = isTemporal
if isDominant:
self.setLayout(GridLayout(8, 2))
else:
self.setLayout(GridLayout(5, 2))
if isTemporal:
self.add(JLabel("Ne"))
ne = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
ne.addPropertyChangeListener(self)
self.ne = ne
self.add(ne)
else:
self.add(JLabel("Attempted Fst"))
fst = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
fst.addPropertyChangeListener(self)
self.fst = fst
self.add(fst)
self.add(JLabel("Expected total pops"))
pops = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
pops.addPropertyChangeListener(self)
# self.pops = JComboBox(['1', '2', '4', '8', '12', '16'])
self.pops = pops
self.add(self.pops)
if not isDominant and not isTemporal:
self.add(JLabel("Mutation model"))
self.mut = JComboBox(["Infinite Alleles", "Stepwise"])
self.mut.addItemListener(self)
self.add(self.mut)
self.add(JLabel("Subsample size"))
sampleSize = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
sampleSize.addPropertyChangeListener(self)
self.sampleSize = sampleSize
self.add(self.sampleSize)
if isDominant:
self.add(JLabel("Theta"))
theta = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
theta.addPropertyChangeListener(self)
self.theta = theta
self.add(theta)
theta.setValue(0.1)
self.add(JLabel("Beta-a"))
beta1 = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
beta1.addPropertyChangeListener(self)
self.beta1 = beta1
self.add(beta1)
beta1.setValue(0.25)
self.add(JLabel("Beta-b"))
beta2 = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
beta2.addPropertyChangeListener(self)
self.beta2 = beta2
self.add(beta2)
beta2.setValue(0.25)
self.add(JLabel("Critical frequency"))
crit = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
crit.addPropertyChangeListener(self)
self.crit = crit
self.add(crit)
crit.setValue(0.99)
run = JButton("Run!")
run.addActionListener(manager)
run.setActionCommand("RunFDist")
self.run = run
self.add(run)
cancel = JButton("Stop")
cancel.addActionListener(manager)
cancel.setActionCommand("CancelFDist")
self.cancel = cancel
def __init__(self,
menuHandles,
manager,
isDominant,
systemPanel,
isTemporal=False):
self.systemPanel = systemPanel
self.knownPops = 0
self.ignoreChanges = True
JPanel()
self.menuHandles = menuHandles
self.isDominant = isDominant
self.isTemporal = isTemporal
if isDominant:
self.setLayout(GridLayout(8, 2))
else:
self.setLayout(GridLayout(5, 2))
if isTemporal:
self.add(JLabel('Ne'))
ne = JFormattedTextField(NumberFormat.getNumberInstance(Locale.US))
ne.addPropertyChangeListener(self)
self.ne = ne
self.add(ne)
self.add(JLabel('Expected total samples'))
else:
self.add(JLabel('Attempted Fst'))
fst = JFormattedTextField(NumberFormat.getNumberInstance(
Locale.US))
fst.addPropertyChangeListener(self)
self.fst = fst
self.add(fst)
self.add(JLabel('Expected total pops'))
pops = JFormattedTextField(NumberFormat.getIntegerInstance(Locale.US))
pops.addPropertyChangeListener(self)
# self.pops = JComboBox(['1', '2', '4', '8', '12', '16'])
self.pops = pops
self.add(self.pops)
if not isDominant and not isTemporal:
self.add(JLabel('Mutation model'))
self.mut = JComboBox(['Infinite Alleles', 'Stepwise'])
self.mut.addItemListener(self)
self.add(self.mut)
else:
self.mut = None
self.add(JLabel('Subsample size'))
sampleSize = JFormattedTextField(
NumberFormat.getIntegerInstance(Locale.US))
sampleSize.addPropertyChangeListener(self)
self.sampleSize = sampleSize
self.add(self.sampleSize)
if isDominant:
self.add(JLabel('Theta'))
theta = JFormattedTextField(
NumberFormat.getNumberInstance(Locale.US))
theta.addPropertyChangeListener(self)
self.theta = theta
self.add(theta)
theta.setValue(0.1)
self.add(JLabel('Beta-a'))
beta1 = JFormattedTextField(
NumberFormat.getNumberInstance(Locale.US))
beta1.addPropertyChangeListener(self)
self.beta1 = beta1
self.add(beta1)
beta1.setValue(0.25)
self.add(JLabel('Beta-b'))
beta2 = JFormattedTextField(
NumberFormat.getNumberInstance(Locale.US))
beta2.addPropertyChangeListener(self)
self.beta2 = beta2
self.add(beta2)
beta2.setValue(0.25)
self.add(JLabel('Critical frequency'))
crit = JFormattedTextField(
NumberFormat.getNumberInstance(Locale.US))
crit.addPropertyChangeListener(self)
self.crit = crit
self.add(crit)
crit.setValue(0.99)
run = JButton('Run!')
run.addActionListener(manager)
run.setActionCommand('RunFDist')
self.run = run
self.add(run)
def createButton(text, command, manager):
button = JButton(text)
button.setActionCommand(command)
button.addActionListener(manager)
return button
