def testAdvancedIndexingManually(self):
x = np.random.RandomState(0).randn(3, 4, 5)
index_array = np.array([0, 2, -1, 0])
op = lambda x, index_array: x[..., index_array, :]
cop = api.jit(op)
a1 = op(x, index_array)
a2 = cop(x, index_array)
self.assertAllClose(a1, a2)
op = lambda x, index_array: x[..., index_array, :, index_array, None]
cop = api.jit(op)
a1 = op(x, index_array)
a2 = cop(x, index_array)
self.assertAllClose(a1, a2)
op = lambda x, index_array: x[index_array, ..., index_array[:, None], None]
cop = api.jit(op)
a1 = op(x, index_array)
a2 = cop(x, index_array)
self.assertAllClose(a1, a2)
def test_jit_on_nondefault_backend(self):
cpus = api.devices("cpu")
self.assertNotEmpty(cpus)
# Since we are not on CPU, some other backend will be the default
default_dev = api.devices()[0]
self.assertNotEqual(default_dev.platform, "cpu")
data_on_cpu = api.device_put(1, device=cpus[0])
self.assertEqual(data_on_cpu.device_buffer.device(), cpus[0])
def my_sin(x):
return jnp.sin(x)
# jit without any device spec follows the data
result1 = api.jit(my_sin)(2)
self.assertEqual(result1.device_buffer.device(), default_dev)
result2 = api.jit(my_sin)(data_on_cpu)
self.assertEqual(result2.device_buffer.device(), cpus[0])
# jit with `device` spec places the data on the specified device
result3 = api.jit(my_sin, device=cpus[0])(2)
self.assertEqual(result3.device_buffer.device(), cpus[0])
# jit with `backend` spec places the data on the specified backend
result4 = api.jit(my_sin, backend="cpu")(2)
self.assertEqual(result4.device_buffer.device(), cpus[0])
def test_closed_over_values_device_placement(self):
# see https://github.com/google/jax/issues/1431
def f():
return jnp.add(3., 4.)
self.assertNotEqual(
api.jit(f)().device_buffer.device(),
api.devices('cpu')[0])
self.assertEqual(
api.jit(f, backend='cpu')().device_buffer.device(),
api.devices('cpu')[0])
def testFloatIndexingError(self):
BAD_INDEX_TYPE_ERROR = "Indexer must have integer or boolean type, got indexer with type"
with self.assertRaisesRegex(TypeError, BAD_INDEX_TYPE_ERROR):
jnp.zeros(2)[0.]
with self.assertRaisesRegex(TypeError, BAD_INDEX_TYPE_ERROR):
jnp.zeros((2, 2))[(0, 0.)]
with self.assertRaisesRegex(TypeError, BAD_INDEX_TYPE_ERROR):
jnp.zeros((2, 2))[(0, 0.)]
with self.assertRaisesRegex(TypeError, BAD_INDEX_TYPE_ERROR):
api.jit(lambda idx: jnp.zeros((2, 2))[idx])((0, 0.))
with self.assertRaisesRegex(TypeError, BAD_INDEX_TYPE_ERROR):
ops.index_add(jnp.zeros(2), 0., 1.)
with self.assertRaisesRegex(TypeError, BAD_INDEX_TYPE_ERROR):
ops.index_update(jnp.zeros(2), 0., 1.)
def testIndexingEmptyDimension(self):
# Issue 2671: XLA error when indexing into dimension of size 0
x = jnp.ones((2, 0))
# The following work, even on axis 1 of size 0
_ = x[0, :] + x[0, None] + x[0, 1:] + x[0, 1:3:2]
with self.assertRaisesRegex(IndexError,
"index .* is out of bounds for axis .* with size 0"):
_ = np.ones((2, 0))[0, 0] # The numpy error
with self.assertRaisesRegex(IndexError,
"index is out of bounds for axis .* with size 0"):
_ = x[0, 0] # JAX indexing
with self.assertRaisesRegex(IndexError,
"index is out of bounds for axis .* with size 0"):
api.jit(lambda i: x[0, i])(0) # JAX indexing under jit
def testCategorical(self, p, axis, dtype, sample_shape):
key = random.PRNGKey(0)
p = np.array(p, dtype=dtype)
logits = np.log(p) - 42 # test unnormalized
out_shape = tuple(np.delete(logits.shape, axis))
shape = sample_shape + out_shape
rand = partial(random.categorical, shape=shape, axis=axis)
crand = api.jit(rand)
uncompiled_samples = rand(key, logits)
compiled_samples = crand(key, logits)
if axis < 0:
axis += len(logits.shape)
for samples in [uncompiled_samples, compiled_samples]:
assert samples.shape == shape
samples = jnp.reshape(samples, (10000,) + out_shape)
if len(p.shape[:-1]) > 0:
ps = np.transpose(p, (1, 0)) if axis == 0 else p
for cat_samples, cat_p in zip(samples.transpose(), ps):
pmf = lambda x: np.where(x < len(cat_p), cat_p[np.minimum(len(cat_p) - 1, x)], 0.0)
self._CheckChiSquared(cat_samples, pmf=pmf)
else:
pmf = lambda x: np.where(x < len(p), p[np.minimum(len(p) - 1, x)], 0.0)
self._CheckChiSquared(samples, pmf=pmf)
def testMultivariateNormal(self, dim, dtype, method):
r = np.random.RandomState(dim)
mean = r.randn(dim)
cov_factor = r.randn(dim, dim)
cov = np.dot(cov_factor, cov_factor.T) + dim * np.eye(dim)
key = random.PRNGKey(0)
rand = partial(random.multivariate_normal,
mean=mean,
cov=cov,
shape=(10000, ),
method=method)
crand = api.jit(rand)
uncompiled_samples = np.asarray(rand(key), np.float64)
compiled_samples = np.asarray(crand(key), np.float64)
inv_scale = scipy.linalg.lapack.dtrtri(np.linalg.cholesky(cov),
lower=True)[0]
for samples in [uncompiled_samples, compiled_samples]:
centered = samples - mean
whitened = np.einsum('nj,ij->ni', centered, inv_scale)
# This is a quick-and-dirty multivariate normality check that tests that a
# uniform mixture of the marginals along the covariance matrix's
# eigenvectors follow a standard normal distribution.
self._CheckKolmogorovSmirnovCDF(whitened.ravel(),
scipy.stats.norm().cdf)
def testIssue187(self):
x = jnp.ones((5, 5))
x[[0, 2, 4], [0, 2, 4]] # doesn't crash
x = np.arange(25).reshape((5, 5))
ans = api.jit(lambda x: x[[0, 2, 4], [0, 2, 4]])(x)
expected = x[[0, 2, 4], [0, 2, 4]]
self.assertAllClose(ans, expected, check_dtypes=False)
def testGamma(self, a, dtype):
key = random.PRNGKey(0)
rand = lambda key, a: random.gamma(key, a, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key, a)
compiled_samples = crand(key, a)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckKolmogorovSmirnovCDF(samples, scipy.stats.gamma(a).cdf)
def testLogistic(self, dtype):
key = random.PRNGKey(0)
rand = lambda key: random.logistic(key, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key)
compiled_samples = crand(key)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckKolmogorovSmirnovCDF(samples, scipy.stats.logistic().cdf)
def _maybe_bool_binop(numpy_fn, lax_fn, bool_lax_fn, lax_doc=False):
def fn(x1, x2):
x1, x2 = _promote_args(numpy_fn.__name__, x1, x2)
return lax_fn(x1, x2) if x1.dtype != np.bool_ else bool_lax_fn(x1, x2)
fn = jit(fn, inline=True)
if lax_doc:
doc = dedent('\n\n'.join(lax_fn.__doc__.split('\n\n')[1:])).strip()
return _wraps(numpy_fn, lax_description=doc)(fn)
else:
return _wraps(numpy_fn)(fn)
def testPareto(self, b, dtype):
key = random.PRNGKey(0)
rand = lambda key, b: random.pareto(key, b, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key, b)
compiled_samples = crand(key, b)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckKolmogorovSmirnovCDF(samples, scipy.stats.pareto(b).cdf)
def testT(self, df, dtype):
key = random.PRNGKey(0)
rand = lambda key, df: random.t(key, df, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key, df)
compiled_samples = crand(key, df)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckKolmogorovSmirnovCDF(samples, scipy.stats.t(df).cdf)
def testRngUniform(self, dtype):
key = random.PRNGKey(0)
rand = lambda key: random.uniform(key, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key)
compiled_samples = crand(key)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckCollisions(samples, jnp.finfo(dtype).nmant)
self._CheckKolmogorovSmirnovCDF(samples, scipy.stats.uniform().cdf)
def _one_to_one_binop(numpy_fn, lax_fn, promote_to_inexact=False, lax_doc=False):
if promote_to_inexact:
fn = lambda x1, x2: lax_fn(*_promote_args_inexact(numpy_fn.__name__, x1, x2))
else:
fn = lambda x1, x2: lax_fn(*_promote_args(numpy_fn.__name__, x1, x2))
fn = jit(fn, inline=True)
if lax_doc:
doc = dedent('\n\n'.join(lax_fn.__doc__.split('\n\n')[1:])).strip()
return _wraps(numpy_fn, lax_description=doc)(fn)
else:
return _wraps(numpy_fn)(fn)
def test_convert_element_type(self):
# Regression test for part of https://github.com/google/jax/issues/5982
with enable_x64():
x = jnp.int64(1)
self.assertEqual(x.dtype, jnp.int64)
y = x.astype(jnp.int32)
self.assertEqual(y.dtype, jnp.int32)
z = api.jit(lambda x: x.astype(jnp.int32))(x)
self.assertEqual(z.dtype, jnp.int32)
def testBernoulli(self, p, dtype):
key = random.PRNGKey(0)
p = np.array(p, dtype=dtype)
rand = lambda key, p: random.bernoulli(key, p, (10000,))
crand = api.jit(rand)
uncompiled_samples = rand(key, p)
compiled_samples = crand(key, p)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckChiSquared(samples, scipy.stats.bernoulli(p).pmf)
def test_prng_seeds_and_keys(self, seed, type, jit, key):
if (jit and type is int and not config.x64_enabled and
(seed < np.iinfo('int32').min or seed > np.iinfo('int32').max)):
self.skipTest("Expected failure: integer out of range for jit.")
seed = type(seed)
if jit:
actual = api.jit(random.PRNGKey)(seed)
else:
actual = random.PRNGKey(seed)
expected = jnp.array(key, dtype=jnp.uint32)
self.assertArraysEqual(actual, expected)
def testNormalComplex(self, dtype):
key = random.PRNGKey(0)
rand = lambda key: random.normal(key, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key)
compiled_samples = crand(key)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckKolmogorovSmirnovCDF(jnp.real(samples), scipy.stats.norm(scale=1/np.sqrt(2)).cdf)
self._CheckKolmogorovSmirnovCDF(jnp.imag(samples), scipy.stats.norm(scale=1/np.sqrt(2)).cdf)
self.assertEqual(dtype, samples.dtype)
def testUnpacking(self):
def foo(x):
a, b, c = x
return a + b + c
cfoo = api.jit(foo)
a1 = foo(np.arange(3))
a2 = cfoo(np.arange(3))
self.assertAllClose(a1, a2)
def testBeta(self, a, b, dtype):
if not config.x64_enabled:
raise SkipTest("skip test except on X64")
key = random.PRNGKey(0)
rand = lambda key, a, b: random.beta(key, a, b, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key, a, b)
compiled_samples = crand(key, a, b)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckKolmogorovSmirnovCDF(samples, scipy.stats.beta(a, b).cdf)
def test_impl(self, ad="simple"):
call_tf = CALL_TF_IMPLEMENTATIONS[ad]
def f_jax(x):
return jnp.sin(x)
def f_outside(x):
return call_tf(tf.math.sin, x,
result_shape=x)
res = f_outside(3.)
self.assertAllClose(f_jax(3.), res)
self.assertAllClose(f_jax(3.), api.jit(f_outside)(3.))
def testDirichlet(self, alpha, dtype):
key = random.PRNGKey(0)
rand = lambda key, alpha: random.dirichlet(key, alpha, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key, alpha)
compiled_samples = crand(key, alpha)
for samples in [uncompiled_samples, compiled_samples]:
self.assertAllClose(samples.sum(-1), np.ones(10000, dtype=dtype))
alpha_sum = sum(alpha)
for i, a in enumerate(alpha):
self._CheckKolmogorovSmirnovCDF(samples[..., i], scipy.stats.beta(a, alpha_sum - a).cdf)
def testPermutationInteger(self):
key = random.PRNGKey(0)
x = 100
rand = lambda key: random.permutation(key, x)
crand = api.jit(rand)
perm1 = rand(key)
perm2 = crand(key)
self.assertAllClose(perm1, perm2)
self.assertEqual(perm1.dtype, perm2.dtype)
self.assertFalse(np.all(perm1 == np.arange(100))) # seems unlikely!
self.assertAllClose(np.sort(perm1), np.arange(100), check_dtypes=False)
def testPoisson(self, lam, dtype):
key = random.PRNGKey(0)
rand = lambda key, lam: random.poisson(key, lam, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key, lam)
compiled_samples = crand(key, lam)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckChiSquared(samples, scipy.stats.poisson(lam).pmf)
# TODO(shoyer): determine error bounds for moments more rigorously (e.g.,
# based on the central limit theorem).
self.assertAllClose(samples.mean(), lam, rtol=0.01, check_dtypes=False)
self.assertAllClose(samples.var(), lam, rtol=0.03, check_dtypes=False)
def testRngRandint(self, dtype):
lo = 5
hi = 10
key = random.PRNGKey(0)
rand = lambda key: random.randint(key, (10000,), lo, hi, dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key)
compiled_samples = crand(key)
for samples in [uncompiled_samples, compiled_samples]:
self.assertTrue(np.all(lo <= samples))
self.assertTrue(np.all(samples < hi))
def testShuffle(self, dtype):
key = random.PRNGKey(0)
x = np.arange(100).astype(dtype)
rand = lambda key: random.shuffle(key, x)
crand = api.jit(rand)
with self.assertWarns(FutureWarning):
perm1 = rand(key)
with self.assertWarns(FutureWarning):
perm2 = crand(key)
self.assertAllClose(perm1, perm2)
self.assertFalse(np.all(perm1 == x)) # seems unlikely!
self.assertAllClose(np.sort(perm1), x, check_dtypes=False)
def testTruncatedNormal(self, dtype):
key = random.PRNGKey(0)
rand = lambda key: random.truncated_normal(key, -0.3, 0.3, (10000,), dtype)
crand = api.jit(rand)
uncompiled_samples = rand(key)
compiled_samples = crand(key)
min_val = np.min(uncompiled_samples)
max_val = np.max(uncompiled_samples)
self.assertTrue(min_val > -0.3)
self.assertTrue(max_val < 0.3)
for samples in [uncompiled_samples, compiled_samples]:
self._CheckKolmogorovSmirnovCDF(samples, scipy.stats.truncnorm(-0.3, 0.3).cdf)
def testPermutationArray(self, dtype, shape):
key = random.PRNGKey(0)
x = jnp.arange(np.prod(shape)).reshape(shape).astype(dtype)
rand = lambda key: random.permutation(key, x)
crand = api.jit(rand)
perm1 = rand(key)
perm2 = crand(key)
self.assertAllClose(perm1, perm2)
if x.shape[0] > 1:
self.assertFalse(np.all(perm1 == x)) # seems unlikely!
self.assertAllClose(np.sort(perm1.ravel()), x.ravel(), check_dtypes=False)
self.assertArraysAllClose(
x, jnp.arange(np.prod(shape)).reshape(shape).astype(dtype))
def _CompileAndCheck(self, fun, args_maker, *, check_dtypes=True,
rtol=None, atol=None, check_cache_misses=True):
"""Helper method for running JAX compilation and allclose assertions."""
args = args_maker()
def wrapped_fun(*args):
self.assertTrue(python_should_be_executing)
return fun(*args)
python_should_be_executing = True
python_ans = fun(*args)
python_shapes = tree_map(lambda x: np.shape(x), python_ans)
np_shapes = tree_map(lambda x: np.shape(np.asarray(x)), python_ans)
self.assertEqual(python_shapes, np_shapes)
cache_misses = dispatch.xla_primitive_callable.cache_info().misses
python_ans = fun(*args)
if check_cache_misses:
self.assertEqual(
cache_misses, dispatch.xla_primitive_callable.cache_info().misses,
"Compilation detected during second call of {} in op-by-op "
"mode.".format(fun))
cfun = api.jit(wrapped_fun)
python_should_be_executing = True
monitored_ans = cfun(*args)
python_should_be_executing = False
compiled_ans = cfun(*args)
self.assertAllClose(python_ans, monitored_ans, check_dtypes=check_dtypes,
atol=atol, rtol=rtol)
self.assertAllClose(python_ans, compiled_ans, check_dtypes=check_dtypes,
atol=atol, rtol=rtol)
args = args_maker()
python_should_be_executing = True
python_ans = fun(*args)
python_should_be_executing = False
compiled_ans = cfun(*args)
self.assertAllClose(python_ans, compiled_ans, check_dtypes=check_dtypes,
atol=atol, rtol=rtol)
