def scaffolding(ax,
scaffoldID,
blastf,
qsizes,
ssizes,
qbed,
sbed,
highlights=None):
from jcvi.graphics.blastplot import blastplot
# qsizes, qbed are properties for the evidences
# ssizes, sbed are properties for the current scaffoldID
blastplot(ax, blastf, qsizes, ssizes, qbed, sbed, \
style="circle", insetLabels=True, stripNames=True,
highlights=highlights)
# FPC_scf.bed => FPC
fname = qbed.filename.split(".")[0].split("_")[0]
xtitle = fname
if xtitle == "FPC":
ax.set_xticklabels([""] * len(ax.get_xticklabels()))
ax.set_xlabel(xtitle, color="g")
for x in ax.get_xticklines():
x.set_visible(False)
def scaffolding(ax, scaffoldID, blastf, qsizes, ssizes, qbed, sbed,
highlights=None):
from jcvi.graphics.blastplot import blastplot
# qsizes, qbed are properties for the evidences
# ssizes, sbed are properties for the current scaffoldID
blastplot(ax, blastf, qsizes, ssizes, qbed, sbed, \
style="circle", insetLabels=True, stripNames=True,
highlights=highlights)
# FPC_scf.bed => FPC
fname = qbed.filename.split(".")[0].split("_")[0]
xtitle = fname
if xtitle == "FPC":
ax.set_xticklabels([""] * len(ax.get_xticklabels()))
ax.set_xlabel(xtitle, color="g")
for x in ax.get_xticklines():
x.set_visible(False)