def terminal_message(message,
subject=None,
color="green",
footer=None,
indent=True):
"""
Print a nicely formatted message as output to the user using a ``rich`` ``Panel``.
:param: message: The message to print out
:param: subject: An optional subject line to add in the header of the ``Panel``
:param: color: An optional color to style the ``subject`` header with
:param: footer: An optional message to display in the footer of the ``Panel``
:param: indent: Adds padding to the left of the message
"""
panel_kwargs = dict(padding=1)
if subject is not None:
panel_kwargs["title"] = f"[{color}]{subject}"
if footer is not None:
panel_kwargs["subtitle"] = f"[dim italic]{footer}[/dim italic]"
text = dedent(message)
if indent:
text = indent_text(text, prefix=" ")
console = Console()
console.print()
console.print(Panel(text, **panel_kwargs))
console.print()
def test_dump_full_config(tmp_path):
application_path = tmp_path / "dummy"
application_path.mkdir()
template_root_path = application_path / "templates"
template_root_path.mkdir()
file1 = template_root_path / "file1"
file1.write_text("foo")
file2 = template_root_path / "file2"
file2.write_text("bar")
config_path = application_path / JOBBERGATE_APPLICATION_CONFIG_FILE_NAME
config_path.write_text(
dedent("""
jobbergate_config:
default_template: test-job-script.py.j2
output_directory: .
application_config:
partition: debug
"""))
assert yaml.safe_load(dump_full_config(application_path)) == dict(
jobbergate_config=dict(
default_template="test-job-script.py.j2",
output_directory=".",
template_files=[
"templates/file1",
"templates/file2",
],
),
application_config=dict(partition="debug", ),
)
def test_validate_application_files__success(tmp_path):
application_path = tmp_path / "dummy"
application_path.mkdir()
application_module = application_path / JOBBERGATE_APPLICATION_MODULE_FILE_NAME
application_module.write_text(
dedent("""
import sys
print(f"Got some args, yo: {sys.argv}")
"""))
application_config = application_path / JOBBERGATE_APPLICATION_CONFIG_FILE_NAME
application_config.write_text(
dedent("""
foo:
bar: baz
"""))
validate_application_files(application_path)
def dummy_template_source():
return dedent("""
#!/bin/python3
#SBATCH -J dummy_job
#SBATCH -t 60
print("I am a very, very dumb job script")
print(f"foo='{{foo}}'")
print(f"bar='{{bar}}'")
print(f"baz='{{baz}}'")
""")
def dummy_module_source():
return dedent("""
from jobbergate_cli.subapps.applications.application_base import JobbergateApplicationBase
from jobbergate_cli.subapps.applications.questions import Text
class JobbergateApplication(JobbergateApplicationBase):
def mainflow(self, data):
data["nextworkflow"] = "subflow"
return [Text("foo", message="gimme the foo!"), Text("bar", message="gimme the bar!")]
def subflow(self, data):
return [Text("baz", message="gimme the baz!", default="zab")]
""")
def dummy_config_source():
return dedent("""
jobbergate_config:
default_template: test-job-script.py.j2
template_files:
- test-job-script.py.j2
output_directory: .
supporting_files_output_name:
supporting_files:
job_script_name:
application_config:
foo: foo
bar: bar
baz: baz
""")
def test_load_application_data__fails_if_application_config_is_not_valid_JobbergateApplicationConfig(
dummy_module_source, ):
app_data = ApplicationResponse(
id=13,
application_name="dummy",
application_owner_email="*****@*****.**",
application_uploaded=True,
application_file=dummy_module_source,
application_config=dedent("""
foo: bar
"""),
)
with pytest.raises(
Abort,
match="The application config fetched from the API is not valid"):
load_application_data(app_data)
def wrapper(*args, **kwargs):
try:
func(*args, **kwargs)
except Abort as err:
if not err.warn_only:
if err.log_message is not None:
logger.error(err.log_message)
if err.original_error is not None:
logger.error(f"Original exception: {err.original_error}")
if settings.SENTRY_DSN:
with sentry_sdk.push_scope() as scope:
if err.sentry_context is not None:
scope.set_context(**err.sentry_context)
sentry_sdk.capture_exception(err.original_error if err.original_error is not None else err)
sentry_sdk.flush()
panel_kwargs = dict()
if err.subject is not None:
panel_kwargs["title"] = f"[red]{err.subject}"
message = dedent(err.message)
if err.support:
support_message = unwrap(
f"""
[yellow]If the problem persists,
please contact [bold]{OV_CONTACT}[/bold]
for support and trouble-shooting
"""
)
message = f"{message}\n\n{support_message}"
console = Console()
console.print()
console.print(Panel(message, **panel_kwargs))
console.print()
raise typer.Exit(code=1)
Provide a stub module to maintain compatibility with previous versions.
Issue a deprecation warning when this module is imported from if JOBBERGATE_COMPATIBILITY_MODE is enabled.
If JOBBERGATE_COMPATIBILITY_MODE is not enabled, raise an import error when this module is imported.
"""
import warnings
from jobbergate_cli.config import settings
from jobbergate_cli.text_tools import dedent, unwrap
if settings.JOBBERGATE_COMPATIBILITY_MODE:
from jobbergate_cli.subapps.applications.application_base import JobbergateApplicationBase # noqa
warnings.warn(
dedent("""
Importing application_base from jobbergate_cli is deprecated.
The module has been moved.
Import 'application_base' from 'jobbergate_cli.subapps.applications' instead",
"""),
DeprecationWarning,
)
else:
raise ImportError(
unwrap("""
JobbergateApplicationBase has been moved to
'jobbergate_cli.subapps.applications.application_base.JobbergateApplicationBase'
"""))
def create(
ctx: typer.Context,
name: str = typer.Option(
...,
help="The name of the job script to create.",
),
application_id: Optional[int] = typer.Option(
None,
help="The id of the application from which to create the job script.",
),
application_identifier: Optional[str] = typer.Option(
None,
help=
"The identifier of the application from which to create the job script.",
),
sbatch_params: Optional[List[str]] = typer.Option(
None,
help="Optional parameter to submit raw sbatch parameters.",
),
param_file: Optional[pathlib.Path] = typer.Option(
None,
help=dedent("""
Supply a yaml file that contains the parameters for populating templates.
If this is not supplied, the question asking in the application is triggered.
"""),
),
fast: bool = typer.Option(
False,
help="Use default answers (when available) instead of asking the user.",
),
submit: Optional[bool] = typer.Option(
None,
help="Do not ask the user if they want to submit a job.",
),
):
"""
Create a new job script.
"""
jg_ctx: JobbergateContext = ctx.obj
# Make static type checkers happy
assert jg_ctx.client is not None
app_data = fetch_application_data(jg_ctx,
id=application_id,
identifier=application_identifier)
(app_config, app_module) = load_application_data(app_data)
request_data = JobScriptCreateRequestData(
application_id=app_data.id,
job_script_name=name,
sbatch_params=sbatch_params,
param_dict=app_config,
)
supplied_params = validate_parameter_file(
param_file) if param_file else dict()
execute_application(app_module,
app_config,
supplied_params,
fast_mode=fast)
if app_config.jobbergate_config.job_script_name is not None:
request_data.job_script_name = app_config.jobbergate_config.job_script_name
job_script_result = cast(
JobScriptResponse,
make_request(
jg_ctx.client,
"/job-scripts",
"POST",
expected_status=201,
abort_message="Couldn't create job script",
support=True,
request_model=request_data,
response_model_cls=JobScriptResponse,
),
)
render_single_result(
jg_ctx,
job_script_result,
hidden_fields=HIDDEN_FIELDS,
title="Created Job Script",
)
# `submit` will be `None` --submit/--no-submit flag was not set
if submit is None:
# If not running in "fast" mode, ask the user what to do.
if not fast:
submit = typer.confirm(
"Would you like to submit this job immediately?")
# Otherwise, assume that the job script should be submitted immediately
else:
submit = True
if not submit:
return
try:
job_submission_result = create_job_submission(
jg_ctx, job_script_result.id, job_script_result.job_script_name)
except Exception as err:
raise Abort(
"Failed to immediately submit the job after job script creation.",
subject="Automatic job submission failed",
support=True,
log_message=
f"There was an issue submitting the job immediately job_script_id={job_script_result.id}.",
original_error=err,
)
render_single_result(
jg_ctx,
job_submission_result,
hidden_fields=JOB_SUBMISSION_HIDDEN_FIELDS,
title="Created Job Submission (Fast Mode)",
)
Provide a stub module to maintain compatibility with previous versions.
Issue a deprecation warning when this module is imported from if JOBBERGATE_COMPATIBILITY_MODE is enabled.
If JOBBERGATE_COMPATIBILITY_MODE is not enabled, raise an import error when this module is imported.
"""
import warnings
from jobbergate_cli.config import settings
from jobbergate_cli.text_tools import dedent, unwrap
if settings.JOBBERGATE_COMPATIBILITY_MODE:
from jobbergate_cli.subapps.applications.application_helpers import * # noqa
warnings.warn(
dedent("""
Importing jobberappslib from jobbergate_cli is deprecated.
The module has been moved.
Import the helper functions from 'jobbergate_cli.subapps.applications.application_helpers' instead",
"""),
DeprecationWarning,
)
else:
raise ImportError(
unwrap("""
The 'jobberappslib' module has been renamed to 'application_helpers' and has been moved to
'jobbergate_cli.subapps.applications.application_helpers'
"""))
