#--------------------------------------------
# Updates
#--------------------------------------------
import os, logging
import numpy as np
import matplotlib.pyplot as plt
from matplotlib.backends.backend_pdf import PdfPages
from mne.time_frequency import psd_welch
from jumeg.base.jumeg_base import jumeg_base as jb
from jumeg.base.jumeg_logger import get_logger
logger = get_logger()
__version__ = "2020.03.30.001"
class JuMEG_PLOT_BASE(object):
__slots__ = [
"picks", "fmin", "fmax", "tmin", "tmax", "proj", "n_fft", "color",
"fill_color", "area_mode", "area_alpha", "pick_types", "n_jobs", "dpi",
"verbose", "check_dead_channels", "info", "fnout", "n_plots",
"file_extention", "name", "_fig", "_plot_index", "_axes", "_yoffset",
"_ylim"
]
def __init__(self, **kwargs):
super().__init__()
import time, datetime
import numpy as np
from distutils.dir_util import mkpath
import matplotlib.pyplot as plt
import mne
from mne.preprocessing import find_ecg_events, find_eog_events
from jumeg.base.jumeg_base import jumeg_base as jb
from jumeg.base.jumeg_base import JUMEG_SLOTS
from jumeg.base.jumeg_base_config import JuMEG_CONFIG as jCFG
from jumeg.base import jumeg_logger
logger = jumeg_logger.get_logger()
__version__ = "2020.04.22.001"
class ARTEFACT_EVENTS(JUMEG_SLOTS):
"""
artefact event dict:
ch_name: str or list of str
event_id: int or list of int
tmin: float tmin is s
tmax: float tmax in s
Example:
--------
ecg:
'''
import numpy as np
import os, sys, argparse
#--- https://stackoverflow.com/questions/40993553/unable-to-suppress-deprecation-warnings
import warnings
with warnings.catch_warnings():
warnings.simplefilter("ignore", category=PendingDeprecationWarning)
import mne
from jumeg.base.jumeg_base import JuMEG_Base_IO
from jumeg.base.jumeg_base import jumeg_base as jb
from jumeg.base import jumeg_logger
from jumeg.filter.jumeg_filter import jumeg_filter
logger = jumeg_logger.get_logger('jumeg')
__version__ = '2020.04.22.001'
class JuMEG_MergeMEEG_HiLoRate(object):
"""
JuMEG_MergeMEEG_HiLoRate class for high and lwower sampled data e.g. meg and eeg data
in JuMEG eeg brainvision data are sampled with 5kHz and meg with 4D sampling rates
"""
def __init__(self, system='MEG'):
super(JuMEG_MergeMEEG_HiLoRate, self).__init__()
self.path = None
self.name = None
self.filename = None
self.raw = None
self.system = system
