def Build_Model_DNN_Image(shape, number_of_classes, sparse_categorical,
min_hidden_layer_dnn, max_hidden_layer_dnn,
min_nodes_dnn, max_nodes_dnn, random_optimizor,
dropout):
'''
buildModel_DNN_image(shape, number_of_classes,sparse_categorical)
Build Deep neural networks Model for text classification
Shape is input feature space
number_of_classes is number of classes
'''
model = Sequential()
values = list(range(min_nodes_dnn, max_nodes_dnn))
Numberof_NOde = random.choice(values)
Lvalues = list(range(min_hidden_layer_dnn, max_hidden_layer_dnn))
nLayers = random.choice(Lvalues)
print(shape)
model.add(Flatten(input_shape=shape))
model.add(Dense(Numberof_NOde, activation='relu'))
model.add(Dropout(dropout))
for i in range(0, nLayers - 1):
Numberof_NOde = random.choice(values)
model.add(Dense(Numberof_NOde, activation='relu'))
model.add(Dropout(dropout))
if number_of_classes == 2:
model.add(Dense(1, activation='sigmoid'))
model_tmp = model
model.compile(loss='binary_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.binary_precision(),
km.binary_recall(),
km.binary_f1_score(),
km.binary_true_positive(),
km.binary_true_negative(),
km.binary_false_positive(),
km.binary_false_negative()
])
else:
model.add(Dense(number_of_classes, activation='softmax'))
model_tmp = model
if sparse_categorical:
model.compile(loss='sparse_categorical_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.sparse_categorical_precision(),
km.sparse_categorical_recall(),
km.sparse_categorical_f1_score(),
km.sparse_categorical_true_positive(),
km.sparse_categorical_true_negative(),
km.sparse_categorical_false_positive(),
km.sparse_categorical_false_negative()
])
else:
model.compile(loss='categorical_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.categorical_precision(),
km.categorical_recall(),
km.categorical_f1_score(),
km.categorical_true_positive(),
km.categorical_true_negative(),
km.categorical_false_positive(),
km.categorical_false_negative()
])
return model, model_tmp
def Build_Model_RNN_Text(word_index,
embedding_index,
number_of_classes,
MAX_SEQUENCE_LENGTH,
EMBEDDING_DIM,
sparse_categorical,
min_hidden_layer_rnn,
max_hidden_layer_rnn,
min_nodes_rnn,
max_nodes_rnn,
random_optimizor,
dropout,
use_cuda=True,
use_bidirectional=True,
_l2=0.01,
lr=1e-3):
"""
def buildModel_RNN(word_index, embedding_index, number_of_classes, MAX_SEQUENCE_LENGTH, EMBEDDING_DIM, sparse_categorical):
word_index in word index ,
embedding_index is embeddings index, look at data_helper.py
number_of_classes is number of classes,
MAX_SEQUENCE_LENGTH is maximum lenght of text sequences
"""
Recurrent = CuDNNGRU if use_cuda else GRU
model = Sequential()
values = list(range(min_nodes_rnn, max_nodes_rnn + 1))
values_layer = list(range(min_hidden_layer_rnn - 1, max_hidden_layer_rnn))
layer = random.choice(values_layer)
print(layer)
embedding_matrix = np.zeros((len(word_index) + 1, EMBEDDING_DIM))
for word, i in word_index.items():
embedding_vector = embedding_index.get(word)
if embedding_vector is not None:
# words not found in embedding index will be all-zeros.
embedding_matrix[i] = embedding_vector
else:
embedding_matrix[i] = embedding_index['UNK']
model.add(
Embedding(len(word_index) + 1,
EMBEDDING_DIM,
weights=[embedding_matrix],
input_length=MAX_SEQUENCE_LENGTH,
trainable=True))
gru_node = random.choice(values)
print(gru_node)
for i in range(0, layer):
if use_bidirectional:
model.add(
Bidirectional(
Recurrent(gru_node,
return_sequences=True,
kernel_regularizer=l2(_l2))))
else:
model.add(
Recurrent(gru_node,
return_sequences=True,
kernel_regularizer=l2(_l2)))
model.add(Dropout(dropout))
if use_bidirectional:
model.add(
Bidirectional(Recurrent(gru_node, kernel_regularizer=l2(_l2))))
else:
model.add(Recurrent(gru_node, kernel_regularizer=l2(_l2)))
model.add(Dropout(dropout))
model.add(Dense(256, activation='relu', kernel_regularizer=l2(_l2)))
if number_of_classes == 2:
model.add(Dense(1, activation='sigmoid', kernel_regularizer=l2(_l2)))
model_tmp = model
model.compile(loss='binary_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.binary_precision(),
km.binary_recall(),
km.binary_f1_score(),
km.binary_true_positive(),
km.binary_true_negative(),
km.binary_false_positive(),
km.binary_false_negative()
])
else:
model.add(
Dense(number_of_classes,
activation='softmax',
kernel_regularizer=l2(_l2)))
model_tmp = model
if sparse_categorical:
model.compile(loss='sparse_categorical_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.sparse_categorical_precision(),
km.sparse_categorical_recall(),
km.sparse_categorical_f1_score(),
km.sparse_categorical_true_positive(),
km.sparse_categorical_true_negative(),
km.sparse_categorical_false_positive(),
km.sparse_categorical_false_negative()
])
else:
model.compile(loss='categorical_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.categorical_precision(),
km.categorical_recall(),
km.categorical_f1_score(),
km.categorical_true_positive(),
km.categorical_true_negative(),
km.categorical_false_positive(),
km.categorical_false_negative()
])
return model, model_tmp
def Build_Model_CNN_Text(word_index,
embedding_index,
number_of_classes,
MAX_SEQUENCE_LENGTH,
EMBEDDING_DIM,
sparse_categorical,
min_hidden_layer_cnn,
max_hidden_layer_cnn,
min_nodes_cnn,
max_nodes_cnn,
random_optimizor,
dropout,
simple_model=False,
_l2=0.01,
lr=1e-3):
"""
def buildModel_CNN(word_index,embedding_index,number_of_classes,MAX_SEQUENCE_LENGTH,EMBEDDING_DIM,Complexity=0):
word_index in word index ,
embedding_index is embeddings index, look at data_helper.py
number_of_classes is number of classes,
MAX_SEQUENCE_LENGTH is maximum lenght of text sequences,
EMBEDDING_DIM is an int value for dimention of word embedding look at data_helper.py
Complexity we have two different CNN model as follows
F=0 is simple CNN with [1 5] hidden layer
Complexity=2 is more complex model of CNN with filter_length of range [1 10]
"""
model = Sequential()
if simple_model:
embedding_matrix = np.zeros((len(word_index) + 1, EMBEDDING_DIM))
for word, i in word_index.items():
embedding_vector = embedding_index.get(word)
if embedding_vector is not None:
# words not found in embedding index will be all-zeros.
embedding_matrix[i] = embedding_vector
else:
embedding_matrix[i] = embedding_index['UNK']
model.add(
Embedding(len(word_index) + 1,
EMBEDDING_DIM,
weights=[embedding_matrix],
input_length=MAX_SEQUENCE_LENGTH,
trainable=True))
values = list(range(min_nodes_cnn, max_nodes_cnn))
Layer = list(range(min_hidden_layer_cnn, max_hidden_layer_cnn))
Layer = random.choice(Layer)
for i in range(0, Layer):
Filter = random.choice(values)
model.add(
Conv1D(Filter,
5,
activation='relu',
kernel_regularizer=l2(_l2)))
model.add(Dropout(dropout))
model.add(MaxPooling1D(5))
model.add(Flatten())
Filter = random.choice(values)
model.add(Dense(Filter, activation='relu', kernel_regularizer=l2(_l2)))
model.add(Dropout(dropout))
Filter = random.choice(values)
model.add(Dense(Filter, activation='relu', kernel_regularizer=l2(_l2)))
model.add(Dropout(dropout))
if number_of_classes == 2:
model.add(
Dense(1, activation='sigmoid', kernel_regularizer=l2(_l2)))
model_tmp = model
model.compile(loss='binary_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.binary_precision(),
km.binary_recall(),
km.binary_f1_score(),
km.binary_true_positive(),
km.binary_true_negative(),
km.binary_false_positive(),
km.binary_false_negative()
])
else:
model.add(
Dense(number_of_classes,
activation='softmax',
kernel_regularizer=l2(_l2)))
model_tmp = model
if sparse_categorical:
model.compile(loss='sparse_categorical_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.sparse_categorical_precision(),
km.sparse_categorical_recall(),
km.sparse_categorical_f1_score(),
km.sparse_categorical_true_positive(),
km.sparse_categorical_true_negative(),
km.sparse_categorical_false_positive(),
km.sparse_categorical_false_negative()
])
else:
model.compile(loss='categorical_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.categorical_precision(),
km.categorical_recall(),
km.categorical_f1_score(),
km.categorical_true_positive(),
km.categorical_true_negative(),
km.categorical_false_positive(),
km.categorical_false_negative()
])
else:
embedding_matrix = np.zeros((len(word_index) + 1, EMBEDDING_DIM))
for word, i in word_index.items():
embedding_vector = embedding_index.get(word)
if embedding_vector is not None:
# words not found in embedding index will be all-zeros.
embedding_matrix[i] = embedding_vector
else:
embedding_matrix[i] = embedding_index['UNK']
embedding_layer = Embedding(len(word_index) + 1,
EMBEDDING_DIM,
weights=[embedding_matrix],
input_length=MAX_SEQUENCE_LENGTH,
trainable=True)
# applying a more complex convolutional approach
convs = []
values_layer = list(range(min_hidden_layer_cnn, max_hidden_layer_cnn))
filter_sizes = []
layer = random.choice(values_layer)
print("Filter ", layer)
for fl in range(0, layer):
filter_sizes.append((fl + 2))
values_node = list(range(min_nodes_cnn, max_nodes_cnn))
node = random.choice(values_node)
print("Node ", node)
sequence_input = Input(shape=(MAX_SEQUENCE_LENGTH, ), dtype='int32')
embedded_sequences = embedding_layer(sequence_input)
for fsz in filter_sizes:
l_conv = Conv1D(node, kernel_size=fsz,
activation='relu')(embedded_sequences)
l_pool = MaxPooling1D(5)(l_conv)
#l_pool = Dropout(0.25)(l_pool)
convs.append(l_pool)
l_merge = Concatenate(axis=1)(convs)
l_cov1 = Conv1D(node, 5, activation='relu')(l_merge)
l_cov1 = Dropout(dropout)(l_cov1)
l_pool1 = MaxPooling1D(5)(l_cov1)
l_cov2 = Conv1D(node, 5, activation='relu')(l_pool1)
l_cov2 = Dropout(dropout)(l_cov2)
l_pool2 = MaxPooling1D(30)(l_cov2)
l_flat = Flatten()(l_pool2)
l_dense = Dense(1024, activation='relu')(l_flat)
l_dense = Dropout(dropout)(l_dense)
l_dense = Dense(512, activation='relu')(l_dense)
l_dense = Dropout(dropout)(l_dense)
if number_of_classes == 2:
preds = Dense(1, activation='sigmoid')(l_dense)
else:
preds = Dense(number_of_classes, activation='softmax')(l_dense)
model = Model(sequence_input, preds)
model_tmp = model
if number_of_classes == 2:
model.compile(loss='binary_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.binary_precision(),
km.binary_recall(),
km.binary_f1_score(),
km.binary_true_positive(),
km.binary_true_negative(),
km.binary_false_positive(),
km.binary_false_negative()
])
else:
if sparse_categorical:
model.compile(loss='sparse_categorical_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.sparse_categorical_precision(),
km.sparse_categorical_recall(),
km.sparse_categorical_f1_score(),
km.sparse_categorical_true_positive(),
km.sparse_categorical_true_negative(),
km.sparse_categorical_false_positive(),
km.sparse_categorical_false_negative()
])
else:
model.compile(loss='categorical_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.categorical_precision(),
km.categorical_recall(),
km.categorical_f1_score(),
km.categorical_true_positive(),
km.categorical_true_negative(),
km.categorical_false_positive(),
km.categorical_false_negative()
])
return model, model_tmp
def Build_Model_RNN_Image(shape, number_of_classes, sparse_categorical,
min_nodes_rnn, max_nodes_rnn, random_optimizor,
dropout):
"""
def Image_model_RNN(num_classes,shape):
num_classes is number of classes,
shape is (w,h,p)
"""
values = list(range(min_nodes_rnn - 1, max_nodes_rnn))
node = random.choice(values)
x = Input(shape=shape)
# Encodes a row of pixels using TimeDistributed Wrapper.
encoded_rows = TimeDistributed(CuDNNLSTM(node,
recurrent_dropout=dropout))(x)
node = random.choice(values)
# Encodes columns of encoded rows.
encoded_columns = CuDNNLSTM(node, recurrent_dropout=dropout)(encoded_rows)
# Final predictions and model.
#prediction = Dense(256, activation='relu')(encoded_columns)
if number_of_classes == 2:
prediction = Dense(1, activation='sigmoid')(encoded_columns)
else:
prediction = Dense(number_of_classes,
activation='softmax')(encoded_columns)
model = Model(x, prediction)
model_tmp = model
if number_of_classes == 2:
model.compile(loss='binary_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.binary_precision(),
km.binary_recall(),
km.binary_f1_score(),
km.binary_true_positive(),
km.binary_true_negative(),
km.binary_false_positive(),
km.binary_false_negative()
])
else:
if sparse_categorical:
model.compile(loss='sparse_categorical_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.sparse_categorical_precision(),
km.sparse_categorical_recall(),
km.sparse_categorical_f1_score(),
km.sparse_categorical_true_positive(),
km.sparse_categorical_true_negative(),
km.sparse_categorical_false_positive(),
km.sparse_categorical_false_negative()
])
else:
model.compile(loss='categorical_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.categorical_precision(),
km.categorical_recall(),
km.categorical_f1_score(),
km.categorical_true_positive(),
km.categorical_true_negative(),
km.categorical_false_positive(),
km.categorical_false_negative()
])
return model, model_tmp
def Build_Model_CNN_Image(shape, number_of_classes, sparse_categorical,
min_hidden_layer_cnn, max_hidden_layer_cnn,
min_nodes_cnn, max_nodes_cnn, random_optimizor,
dropout):
"""""
def Image_model_CNN(num_classes,shape):
num_classes is number of classes,
shape is (w,h,p)
""" ""
model = Sequential()
values = list(range(min_nodes_cnn, max_nodes_cnn))
Layers = list(range(min_hidden_layer_cnn, max_hidden_layer_cnn))
Layer = random.choice(Layers)
Filter = random.choice(values)
model.add(Conv2D(Filter, (3, 3), padding='same', input_shape=shape))
model.add(Activation('relu'))
model.add(Conv2D(Filter, (3, 3)))
model.add(Activation('relu'))
for i in range(0, Layer):
Filter = random.choice(values)
model.add(Conv2D(Filter, (3, 3), padding='same'))
model.add(Activation('relu'))
model.add(MaxPooling2D(pool_size=(2, 2)))
model.add(Dropout(dropout))
model.add(Flatten())
model.add(Dense(256, activation='relu'))
model.add(Dropout(dropout))
if number_of_classes == 2:
model.add(Dense(1, activation='sigmoid', kernel_constraint=maxnorm(3)))
model_tmp = model
model.compile(loss='binary_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.binary_precision(),
km.binary_recall(),
km.binary_f1_score(),
km.binary_true_positive(),
km.binary_true_negative(),
km.binary_false_positive(),
km.binary_false_negative()
])
else:
model.add(
Dense(number_of_classes,
activation='softmax',
kernel_constraint=maxnorm(3)))
model_tmp = model
if sparse_categorical:
model.compile(loss='sparse_categorical_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.sparse_categorical_precision(),
km.sparse_categorical_recall(),
km.sparse_categorical_f1_score(),
km.sparse_categorical_true_positive(),
km.sparse_categorical_true_negative(),
km.sparse_categorical_false_positive(),
km.sparse_categorical_false_negative()
])
else:
model.compile(loss='categorical_crossentropy',
optimizer=optimizors(random_optimizor),
metrics=[
'accuracy',
km.categorical_precision(),
km.categorical_recall(),
km.categorical_f1_score(),
km.categorical_true_positive(),
km.categorical_true_negative(),
km.categorical_false_positive(),
km.categorical_false_negative()
])
return model, model_tmp
def Build_Model_DNN_Text(shape,
number_of_classes,
sparse_categorical,
min_hidden_layer_dnn,
max_hidden_layer_dnn,
min_nodes_dnn,
max_nodes_dnn,
random_optimizor,
dropout,
_l2=0.01,
lr=1e-3):
"""
buildModel_DNN_Tex(shape, number_of_classes,sparse_categorical)
Build Deep neural networks Model for text classification
Shape is input feature space
number_of_classes is number of classes
"""
model = Sequential()
layer = list(range(min_hidden_layer_dnn, max_hidden_layer_dnn))
node = list(range(min_nodes_dnn, max_nodes_dnn))
Numberof_NOde = random.choice(node)
nLayers = random.choice(layer)
Numberof_NOde_old = Numberof_NOde
model.add(
Dense(Numberof_NOde,
input_dim=shape,
activation='relu',
kernel_regularizer=l2(_l2)))
model.add(Dropout(dropout))
for i in range(0, nLayers):
Numberof_NOde = random.choice(node)
model.add(
Dense(Numberof_NOde,
input_dim=Numberof_NOde_old,
activation='relu',
kernel_regularizer=l2(_l2)))
model.add(Dropout(dropout))
Numberof_NOde_old = Numberof_NOde
if number_of_classes == 2:
model.add(Dense(1, activation='sigmoid', kernel_regularizer=l2(_l2)))
model_tmp = model
model.compile(loss='binary_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.binary_precision(),
km.binary_recall(),
km.binary_f1_score(),
km.binary_true_positive(),
km.binary_true_negative(),
km.binary_false_positive(),
km.binary_false_negative()
])
else:
model.add(
Dense(number_of_classes,
activation='softmax',
kernel_regularizer=l2(_l2)))
model_tmp = model
if sparse_categorical:
model.compile(loss='sparse_categorical_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.sparse_categorical_precision(),
km.sparse_categorical_recall(),
km.sparse_categorical_f1_score(),
km.sparse_categorical_true_positive(),
km.sparse_categorical_true_negative(),
km.sparse_categorical_false_positive(),
km.sparse_categorical_false_negative()
])
else:
model.compile(loss='categorical_crossentropy',
optimizer=optimizors(random_optimizor, lr),
metrics=[
'accuracy',
km.categorical_precision(),
km.categorical_recall(),
km.categorical_f1_score(),
km.categorical_true_positive(),
km.categorical_true_negative(),
km.categorical_false_positive(),
km.categorical_false_negative()
])
return model, model_tmp
def _compile_keras_model(self, optimizer=None):
if optimizer is None:
optimizer = self.keras_train_model.optimizer
if optimizer is None:
optimizer = self._create_optimizer()
def zero_loss(true_word, topk_predictions):
return tf.constant(0.0, shape=(), dtype=tf.float32)
margin = 0.0000001
theta = lambda t: (tf.keras.backend.sign(t) + 1.) / 2.
def loss(y_true, y_pred):
y_true = tf.dtypes.cast(y_true, dtype=tf.float32)
y_pred = tf.dtypes.cast(y_pred, dtype=tf.float32)
return -(
1 - theta(y_true - margin) * theta(y_pred - margin) -
theta(1 - margin - y_true) * theta(1 - margin - y_pred)) * (
y_true * tf.keras.backend.log(y_pred + 1e-8) +
(1 - y_true) * tf.keras.backend.log(1 - y_pred + 1e-8))
class FocalLoss(keras.losses.Loss):
def __init__(self,
gamma=2.,
alpha=4.,
reduction=keras.losses.Reduction.AUTO,
name='focal_loss'):
"""Focal loss for multi-classification
FL(p_t)=-alpha(1-p_t)^{gamma}ln(p_t)
Notice: y_pred is probability after softmax
gradient is d(Fl)/d(p_t) not d(Fl)/d(x) as described in paper
d(Fl)/d(p_t) * [p_t(1-p_t)] = d(Fl)/d(x)
Focal Loss for Dense Object Detection
https://arxiv.org/abs/1708.02002
Keyword Arguments:
gamma {float} -- (default: {2.0})
alpha {float} -- (default: {4.0})
"""
super(FocalLoss, self).__init__(reduction=reduction, name=name)
self.gamma = float(gamma)
self.alpha = float(alpha)
def call(self, y_true, y_pred):
"""
Arguments:
y_true {tensor} -- ground truth labels, shape of [batch_size, num_cls]
y_pred {tensor} -- model's output, shape of [batch_size, num_cls]
Returns:
[tensor] -- loss.
"""
epsilon = 1.e-9
y_true = tf.dtypes.cast(y_true, dtype=tf.float32)
y_pred = tf.dtypes.cast(y_pred, dtype=tf.float32)
model_out = tf.add(y_pred, epsilon)
ce = tf.multiply(y_true, -tf.math.log(model_out))
weight = tf.multiply(
y_true, tf.pow(tf.subtract(1., model_out), self.gamma))
fl = tf.multiply(self.alpha, tf.multiply(weight, ce))
reduced_fl = tf.reduce_max(fl, axis=1)
return tf.reduce_mean(reduced_fl)
def matthews_correlation(y_true, y_pred):
"""Matthews correlation metric.
# Aliases
It is only computed as a batch-wise average, not globally.
Computes the Matthews correlation coefficient measure for quality
of binary classification problems.
"""
y_pred_pos = K.round(K.clip(y_pred, 0, 1))
y_pred_neg = 1 - y_pred_pos
y_pos = K.round(K.clip(y_true, 0, 1))
y_neg = 1 - y_pos
tp = K.sum(y_pos * y_pred_pos)
tn = K.sum(y_neg * y_pred_neg)
fp = K.sum(y_neg * y_pred_pos)
fn = K.sum(y_pos * y_pred_neg)
numerator = (tp * tn - fp * fn)
denominator = K.sqrt((tp + fp) * (tp + fn) * (tn + fp) * (tn + fn))
return numerator / (denominator + K.epsilon())
def precision(y_true, y_pred):
"""Precision metric.
Only computes a batch-wise average of precision.
Computes the precision, a metric for multi-label classification of
how many selected items are relevant.
"""
true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1)))
predicted_positives = K.sum(K.round(K.clip(y_pred, 0, 1)))
precision = true_positives / (predicted_positives + K.epsilon())
return precision
def recall(y_true, y_pred):
"""Recall metric.
Only computes a batch-wise average of recall.
Computes the recall, a metric for multi-label classification of
how many relevant items are selected.
"""
true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1)))
false_negative = K.sum(K.round(K.clip(y_true * y_pred, 0, 1)))
possible_positives = K.sum(K.round(K.clip(y_true, 0, 1)))
recall = true_positives / (possible_positives + K.epsilon())
return recall
@tf.function
def fbeta_score(y_true, y_pred, beta=1):
"""Computes the F score.
The F score is the weighted harmonic mean of precision and recall.
Here it is only computed as a batch-wise average, not globally.
This is useful for multi-label classification, where input samples can be
classified as sets of labels. By only using accuracy (precision) a model
would achieve a perfect score by simply assigning every class to every
input. In order to avoid this, a metric should penalize incorrect class
assignments as well (recall). The F-beta score (ranged from 0.0 to 1.0)
computes this, as a weighted mean of the proportion of correct class
assignments vs. the proportion of incorrect class assignments.
With beta = 1, this is equivalent to a F-measure. With beta < 1, assigning
correct classes becomes more important, and with beta > 1 the metric is
instead weighted towards penalizing incorrect class assignments.
"""
if beta < 0:
raise ValueError(
'The lowest choosable beta is zero (only precision).')
# If there are no true positives, fix the F score at 0 like sklearn.
if K.sum(K.round(K.clip(y_true, 0, 1))) == 0:
return 0
p = precision(y_true, y_pred)
r = recall(y_true, y_pred)
bb = beta**2
fbeta_score = (1 + bb) * (p * r) / (bb * p + r + K.epsilon())
return fbeta_score
def fmeasure(y_true, y_pred):
"""Computes the f-measure, the harmonic mean of precision and recall.
Here it is only computed as a batch-wise average, not globally.
"""
return fbeta_score(y_true, y_pred, beta=1)
def f1(y_true, y_pred):
def recall(y_true, y_pred):
"""Recall metric.
Only computes a batch-wise average of recall.
Computes the recall, a metric for multi-label classification of
how many relevant items are selected.
"""
true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1)))
possible_positives = K.sum(K.round(K.clip(y_true, 0, 1)))
recall = true_positives / (possible_positives + K.epsilon())
return recall
def precision(y_true, y_pred):
"""Precision metric.
Only computes a batch-wise average of precision.
Computes the precision, a metric for multi-label classification of
how many selected items are relevant.
"""
true_positives = K.sum(K.round(K.clip(y_true * y_pred, 0, 1)))
predicted_positives = K.sum(K.round(K.clip(y_pred, 0, 1)))
precision = true_positives / (predicted_positives +
K.epsilon())
return precision
precision = precision(y_true, y_pred)
recall = recall(y_true, y_pred)
return 2 * ((precision * recall) /
(precision + recall + K.epsilon()))
#召回率评价指标
def metric_precision(y_true, y_pred):
threshold = 0.99998
#threshold = 0.5
y_pred = tf.dtypes.cast(tf.keras.backend.less(threshold, y_pred),
y_true.dtype)
TP = tf.reduce_sum(y_true * tf.round(y_pred))
TN = tf.reduce_sum((1 - y_true) * (1 - tf.round(y_pred)))
FP = tf.reduce_sum((1 - y_true) * tf.round(y_pred))
FN = tf.reduce_sum(y_true * (1 - tf.round(y_pred)))
precision = TP / (TP + FP)
return precision
#召回率评价指标
def metric_recall(y_true, y_pred):
threshold = 0.99998
#threshold = 0.5
y_pred = tf.dtypes.cast(tf.keras.backend.less(threshold, y_pred),
y_true.dtype)
TP = tf.reduce_sum(y_true * tf.round(y_pred))
TN = tf.reduce_sum((1 - y_true) * (1 - tf.round(y_pred)))
FP = tf.reduce_sum((1 - y_true) * tf.round(y_pred))
FN = tf.reduce_sum(y_true * (1 - tf.round(y_pred)))
recall = TP / (TP + FN)
return recall
#F1-score评价指标
def metric_F1score(y_true, y_pred):
threshold = 0.99998
@tf.function
def load_data(inputs):
print("-------------------------------------------")
tf.print(inputs) # print inside the graph context
load_data(y_true)
load_data(y_pred)
#threshold = 0.5
y_pred = tf.dtypes.cast(tf.keras.backend.less(threshold, y_pred),
y_true.dtype)
TP = tf.reduce_sum(y_true * tf.round(y_pred))
TN = tf.reduce_sum((1 - y_true) * (1 - tf.round(y_pred)))
FP = tf.reduce_sum((1 - y_true) * tf.round(y_pred))
FN = tf.reduce_sum(y_true * (1 - tf.round(y_pred)))
precision = TP / (TP + FP)
recall = TP / (TP + FN)
F1score = 2 * precision * recall / (precision + recall)
return F1score
def threshold_binary_accuracy(y_true, y_pred):
threshold = 0.99998
#threshold = 0.5
return tf.keras.backend.mean(
tf.keras.backend.equal(
y_true,
tf.dtypes.cast(tf.keras.backend.less(threshold, y_pred),
y_true.dtype)))
def TP(y_true, y_pred):
threshold = 0.99998
#threshold = 0.5
y_pred = tf.dtypes.cast(tf.keras.backend.less(threshold, y_pred),
y_true.dtype)
TP = tf.reduce_sum(y_true * tf.round(y_pred))
return TP
def TN(y_true, y_pred):
threshold = 0.99998
#threshold = 0.5
y_pred = tf.dtypes.cast(tf.keras.backend.less(threshold, y_pred),
y_true.dtype)
TN = tf.reduce_sum((1 - y_true) * (1 - tf.round(y_pred)))
return TN
def FP(y_true, y_pred):
threshold = 0.99998
#threshold = 0.5
y_pred = tf.dtypes.cast(tf.keras.backend.less(threshold, y_pred),
y_true.dtype)
FP = tf.reduce_sum((1 - y_true) * tf.round(y_pred))
return FP
def FN(y_true, y_pred):
threshold = 0.99998
#threshold = 0.5
y_pred = tf.dtypes.cast(tf.keras.backend.less(threshold, y_pred),
y_true.dtype)
FN = tf.reduce_sum(y_true * (1 - tf.round(y_pred)))
return FN
self.keras_train_model.compile(
loss='sparse_categorical_crossentropy',
optimizer=optimizer,
metrics=["sparse_categorical_accuracy", metric_F1score])
self.keras_eval_model.compile(loss='sparse_categorical_crossentropy',
optimizer=optimizer,
metrics=[
"sparse_categorical_accuracy",
metric_precision,
km.sparse_categorical_precision(),
metric_F1score, TP, TN, FP, FN
])
#3 Flattening
#Create vector
classifier.add(Flatten())
#4 Full connection
#hidden layer
# 128 needed experiments to decide correct number
classifier.add(Dense(output_dim=194, activation='relu'))
classifier.add(Dropout(0.5))
classifier.add(Dense(output_dim=4, activation='softmax'))
recall = km.binary_recall(label=0)
precision = km.binary_precision(label=1)
c_precision = km.categorical_precision()
sc_precision = km.sparse_categorical_precision()
c_precision, 'accuracy', sc_precision, recall, precision
#5 compile the CNN
classifier.compile(
optimizer='Adam',
loss='categorical_crossentropy',
metrics=[c_precision, 'accuracy', sc_precision, recall, precision])
#Image augmentation. Do this?
train_datagen = ImageDataGenerator(rescale=1. / 255,
shear_range=0.2,
zoom_range=0.2,
horizontal_flip=False)