Python GraphLabels.consume_sequence_and_tag_with_labels Beispiele

Beispiel #1

Datei: test_labelhash.py Projekt: wltrimbl/khmer

def test_consume_sequence_and_tag_with_labels():
    lb = GraphLabels(20, 1e6, 4)
    label = 0
    sequence = 'ATGCATCGATCGATCGATCGATCGATCGATCGATCGATCG'

    lb.consume_sequence_and_tag_with_labels(sequence, label)
    labels = set()
    labels.update(lb.sweep_label_neighborhood(sequence))

    assert label in labels
    assert len(labels) == 1

Beispiel #2

def test_consume_sequence_and_tag_with_labels():
    lb = GraphLabels(20, 1e6, 4)
    label = 0
    sequence = 'ATGCATCGATCGATCGATCGATCGATCGATCGATCGATCG'

    lb.consume_sequence_and_tag_with_labels(sequence, label)
    labels = set()
    labels.update(lb.sweep_label_neighborhood(sequence))

    assert label in labels
    assert len(labels) == 1