def get(self, process_id):
process = NormalizationProcess(int(process_id))
text = process.generate_echo_picklist()
self.set_header('Content-Type', 'text/csv')
self.set_header('Expires', '0')
self.set_header('Cache-Control', 'no-cache')
self.set_header(
'Content-Disposition', 'attachment; filename='
'NormalizationSheet_%s.csv' % process_id)
self.write(text)
self.finish()
def create_normalization_process(user, quant_process):
water = ReagentComposition(3)
norm_process = NormalizationProcess.create(
user, quant_process, water,
'Normalized test plate %s' % datetime.now())
norm_plate = norm_process.plates[0]
return norm_process, norm_plate
def post(self):
user = self.current_user
plates_info = self.get_argument('plates_info')
water = self.get_argument('water')
total_vol = self.get_argument('total_vol')
ng = self.get_argument('ng')
min_vol = self.get_argument('min_vol')
max_vol = self.get_argument('max_vol')
resolution = self.get_argument('resolution')
reformat = self.get_argument('reformat')
processes = [[
plate_id,
NormalizationProcess.create(
user,
Plate(plate_id).quantification_process,
ReagentComposition.from_external_id(water),
plate_name,
total_vol=float(total_vol),
ng=float(ng),
min_vol=float(min_vol),
max_vol=float(max_vol),
resolution=float(resolution),
reformat=reformat).id
] for plate_id, plate_name in json_decode(plates_info)]
self.write({'processes': processes})
def post(self):
user = self.current_user
plate_id = self.get_argument('plate_id')
water = self.get_argument('water')
plate_name = self.get_argument('plate_name')
total_vol = self.get_argument('total_vol')
ng = self.get_argument('ng')
min_vol = self.get_argument('min_vol')
max_vol = self.get_argument('max_vol')
resolution = self.get_argument('resolution')
reformat = self.get_argument('reformat')
qprocess = Plate(plate_id).quantification_process
process = NormalizationProcess.create(
user,
qprocess,
ReagentComposition.from_external_id(water),
plate_name,
total_vol=float(total_vol),
ng=float(ng),
min_vol=float(min_vol),
max_vol=float(max_vol),
resolution=float(resolution),
reformat=reformat)
self.write({'process': process.id})
def post(self):
user = self.current_user
plates_info = self.get_argument('plates_info')
water = self.get_argument('water')
total_vol = self.get_argument('total_vol')
ng = self.get_argument('ng')
min_vol = self.get_argument('min_vol')
max_vol = self.get_argument('max_vol')
resolution = self.get_argument('resolution')
reformat = self.get_argument('reformat')
# NB: JavaScript uses true and false, posting converts them to strings
reformat = reformat == 'true'
processes = [[
plate_id,
NormalizationProcess.create(
user,
QuantificationProcess(quantification_process_id),
ReagentComposition.from_external_id(water),
plate_name,
total_vol=float(total_vol),
ng=float(ng),
min_vol=float(min_vol),
max_vol=float(max_vol),
resolution=float(resolution),
reformat=reformat).id
] for plate_id, plate_name, quantification_process_id in json_decode(
plates_info)]
self.write({'processes': processes})
def get(self):
plate_ids = self.get_arguments('plate_id')
process_id = self.get_argument('process_id', None)
water = None
compressed_plate = None
func_data = {}
if process_id is not None:
try:
process = NormalizationProcess(process_id)
except LabmanUnknownIdError:
raise HTTPError(404,
reason="Normalization process %s doesn't "
"exist" % process_id)
water = process.water_lot.external_lot_id
func_data = process.normalization_function_data
compressed_plate = process.compressed_plate.id
self.render('normalization.html',
plate_ids=plate_ids,
process_id=process_id,
water=water,
func_data=json_encode(func_data),
compressed_plate=compressed_plate)