def testRead(self):
graph = Graph()
op = OpBlockwiseFilesetReader(graph=graph)
op.DescriptionFilePath.setValue(self.configpath)
slice1 = numpy.s_[:, 20:150, 20:150, 20:100, :]
readData = op.Output[slice1].wait()
assert (readData == self.data[slice1]).all()
op.cleanUp()
def testRead(self):
graph = Graph()
op = OpBlockwiseFilesetReader(graph=graph)
op.DescriptionFilePath.setValue( self.configpath )
slice1 = numpy.s_[ :, 20:150, 20:150, 20:100, : ]
readData = op.Output[ slice1 ].wait()
assert (readData == self.data[slice1]).all()
op.cleanUp()
def _attemptOpenAsBlockwiseFileset(self, filePath):
fileExtension = os.path.splitext(filePath)[1].lower()
fileExtension = fileExtension.lstrip(".") # Remove leading dot
if fileExtension in OpInputDataReader.blockwiseExts:
opReader = OpBlockwiseFilesetReader(parent=self)
try:
# This will raise a SchemaError if this is the wrong type of json config.
opReader.DescriptionFilePath.setValue(filePath)
return (opReader, opReader.Output)
except JsonConfigSchema.SchemaError:
opReader.cleanUp()
return (None, None)
def _attemptOpenAsBlockwiseFileset(self, filePath):
fileExtension = os.path.splitext(filePath)[1].lower()
fileExtension = fileExtension.lstrip('.') # Remove leading dot
if fileExtension in OpInputDataReader.blockwiseExts:
opReader = OpBlockwiseFilesetReader(parent=self)
try:
# This will raise a SchemaError if this is the wrong type of json config.
opReader.DescriptionFilePath.setValue(filePath)
return ([opReader], opReader.Output)
except JsonConfigParser.SchemaError:
opReader.cleanUp()
except OpBlockwiseFilesetReader.MissingDatasetError as e:
raise OpInputDataReader.DatasetReadError(*e.args)
return ([], None)
