def _test_volume(self, hostname, uuid, dataname, start, stop):
"""
hostname: The dvid server host
uuid: The node we can test with
dataname: The data instance to test with
start, stop: The bounds of the cutout volume to retrieve from the server. C ORDER FOR THIS TEST BECAUSE we use transpose_axes=True
"""
# Retrieve from server
graph = Graph()
opDvidVolume = OpDvidVolume(hostname,
uuid,
dataname, {},
transpose_axes=True,
graph=graph)
subvol = opDvidVolume.Output(start, stop).wait()
# Retrieve from file (which uses fortran order)
slicing = tuple(slice(x, y) for x, y in zip(start, stop))
slicing = tuple(reversed(slicing))
expected_data = self.original_data[slicing]
# Compare.
assert ( subvol.view(numpy.ndarray) == expected_data.transpose() ).all(),\
"Data from server didn't match data from file!"
def _test_volume(self, hostname, h5filename, uuid, dataname, start, stop):
"""
hostname: The dvid server host
h5filename: The h5 file to compare against
h5group: The hdf5 group, also used as the uuid of the dvid dataset
h5dataset: The dataset name, also used as the name of the dvid dataset
start, stop: The bounds of the cutout volume to retrieve from the server. C ORDER FOR THIS TEST BECAUSE we use transpose_axes=True
"""
# Retrieve from server
graph = Graph()
opDvidVolume = OpDvidVolume(hostname,
uuid,
dataname, {},
transpose_axes=True,
graph=graph)
subvol = opDvidVolume.Output(start, stop).wait()
# Retrieve from file (which uses fortran order)
slicing = tuple(slice(x, y) for x, y in zip(start, stop))
slicing = tuple(reversed(slicing))
with h5py.File(h5filename, 'r') as f:
expected_data = f['all_nodes'][uuid][dataname][slicing]
# Compare.
assert ( subvol.view(numpy.ndarray) == expected_data.transpose() ).all(),\
"Data from server didn't match data from file!"