def test_from_flat_file2(self):
"""fixtures/goodPssmObCb.txt should be a valid motif"""
foo = Motif.from_flat_file('fixtures/goodPssmObCb.txt')
self.assertTrue(Motif._validpssm(foo.pssm))
def test_validpssm(self):
"""This is a valid pssm, it should pass"""
pssm = [[0.1, 0.3, 0.4, 0.2], [0.5, 0.1, 0.1, 0.3],
[0.2, 0.4, 0.3, 0.1]]
self.assertTrue(Motif._validpssm(pssm))