# Use the Annotator.ids function to return a vector of id strings used in the model, and
# print them to the terminal.
print('The id strings used in the model are:')
ids = annotator.ids()
for id in ids:
print(' - "{}"'.format(id))
# end 4.a
# The hex strings printed are those which have been automatically generated by the assignId
# function we can also see the 'marco' and 'polo' ids as expected.
# 4.b
# Use the duplicateIds function to return a vector of those ids which have been duplicated in
# the model, and print them to the terminal.
print('Duplicated id strings are:')
duplicated_ids = annotator.duplicateIds()
for id in duplicated_ids:
print(' - "{}" occurs {} times'.format(id, annotator.itemCount(id)))
# end 4
print('----------------------------------------------------------')
print(' STEP 5: See who else is lurking around the corner ')
print('----------------------------------------------------------')
# The final step is to make sure that imported items can have their annotations
# tracked back to their sources too.
# 5.a
# Retrieve an item with id of 'whoAmIAndWhereDidIComeFrom' and print its item type
# to the terminal.
def test_list_duplicate_ids(self):
from libcellml import Annotator, CellmlElementType, Parser
model_string = file_contents("annotator/lots_of_duplicate_ids.cellml")
parser = Parser()
annotator = Annotator()
model = parser.parseModel(model_string)
annotator.setModel(model)
id_list = annotator.duplicateIds()
expected_ids = ('duplicateId1', 'duplicateId2', 'duplicateId3',
'duplicateId4')
self.assertEqual(expected_ids, id_list)
# Get the collections by duplicated id.
c2v1 = model.component("component2").variable("variable1")
c2v2 = model.component("component2").variable("variable2")
c3v1 = model.component("component2").component("component3").variable(
"variable1")
c3v2 = model.component("component2").component("component3").variable(
"variable2")
c4v1 = model.component("component4").variable("variable1")
c4v2 = model.component("component4").variable("variable2")
expected_items = {
"duplicateId1": (
(CellmlElementType.UNITS, model.units("units2")),
(CellmlElementType.IMPORT, model.importSource(0)),
(CellmlElementType.MAP_VARIABLES, (c4v1, c2v1)),
(CellmlElementType.COMPONENT, model.component("component2")),
(CellmlElementType.CONNECTION, (c2v1, c3v1)),
(CellmlElementType.TEST_VALUE,
model.component("component2").reset(0)),
(CellmlElementType.COMPONENT_REF,
model.component("component2").component("component3")),
(CellmlElementType.VARIABLE,
model.component("component2").component(
"component3").variable("variable2")),
),
"duplicateId2": (
(CellmlElementType.MODEL, model),
(CellmlElementType.UNITS, model.units("units1")),
(CellmlElementType.UNITS, model.units("blob")),
(CellmlElementType.CONNECTION, (c4v2, c2v2)),
(CellmlElementType.VARIABLE, c4v2),
(CellmlElementType.COMPONENT_REF,
model.component("component2")),
(CellmlElementType.RESET,
model.component("component2").reset(0)),
(CellmlElementType.VARIABLE, c3v1),
),
"duplicateId3": (
(CellmlElementType.IMPORT, model.importSource(1)),
(CellmlElementType.UNITS, model.units("units3")),
(CellmlElementType.VARIABLE, c4v1),
(CellmlElementType.VARIABLE, c2v2),
(CellmlElementType.MAP_VARIABLES, (c2v2, c4v2)),
(CellmlElementType.COMPONENT,
model.component("component2").component("component3")),
(CellmlElementType.ENCAPSULATION, model),
),
"duplicateId4": (
(CellmlElementType.UNIT, ((model.units("units2"), 0))),
(CellmlElementType.COMPONENT, model.component("component1")),
(CellmlElementType.COMPONENT, model.component("component4")),
(CellmlElementType.MAP_VARIABLES, (c2v1, c3v1)),
(CellmlElementType.VARIABLE, c2v1),
(CellmlElementType.MAP_VARIABLES, (c2v2, c4v2)),
(CellmlElementType.RESET_VALUE,
model.component("component2").reset(0)),
)
}
for id in expected_ids:
items_with_id = annotator.items(id)
count = 0
for item in items_with_id:
self.assertEqual(item[0], expected_items[id][count][0])
# SWIG copies the pointers so can't expect a comparison to be true. Not sure how to
# compare these ...
# self.assertEqual(item[1], expected_items[id][count][1])
count = count + 1