def analyse(api_key, endpoint, doi, project_id, result_id, project_short_name,
path, throttle, **kwargs):
"""Analyse Convert-a-Card results."""
e = enki.Enki(api_key, endpoint, project_short_name, all=1)
result = enki.pbclient.find_results(project_id, id=result_id, limit=1,
all=1)[0]
df = helpers.get_task_run_df(e, result.task_id)
df = df.loc[:, df.columns.isin(VALID_KEYS)]
df = helpers.drop_empty_rows(df)
n_task_runs = len(df.index)
# Initialise the result
defaults = {k: "" for k in df.keys()}
result.info = helpers.init_result_info(doi, path, defaults)
has_answers = not df.empty
has_matches = helpers.has_n_matches(df, n_task_runs, MATCH_PERCENTAGE)
# Matching answers
if has_answers and has_matches:
for k in df.keys():
result.info[k] = df[k].value_counts().idxmax()
# Varied answers
elif has_answers:
result.info['analysis_complete'] = False
enki.pbclient.update_result(result)
time.sleep(throttle)
def analyse(api_key, endpoint, doi, project_id, result_id, project_short_name,
path, throttle, **kwargs):
"""Analyse Convert-a-Card results."""
e = enki.Enki(api_key, endpoint, project_short_name, all=1)
result = enki.pbclient.find_results(project_id,
id=result_id,
limit=1,
all=1)[0]
df = helpers.get_task_run_df(e, result.task_id)
df = df.loc[:, df.columns.isin(VALID_KEYS)]
df = helpers.drop_empty_rows(df)
n_task_runs = len(df.index)
# Initialise the result
defaults = {k: "" for k in df.keys()}
result.info = helpers.init_result_info(doi, path, defaults)
has_answers = not df.empty
has_matches = helpers.has_n_matches(df, n_task_runs, MATCH_PERCENTAGE)
# Matching answers
if has_answers and has_matches:
for k in df.keys():
result.info[k] = df[k].value_counts().idxmax()
# Varied answers
elif has_answers:
result.info['analysis_complete'] = False
enki.pbclient.update_result(result)
time.sleep(throttle)
def analyse_selections(api_key, endpoint, project_id, result_id, path, doi,
project_short_name, throttle, **kwargs):
"""Analyse In the Spotlight selection results."""
e = enki.Enki(api_key, endpoint, project_short_name, all=1)
result = enki.pbclient.find_results(project_id, id=result_id, limit=1,
all=1)[0]
df = helpers.get_task_run_df(e, result.task_id)
# Flatten annotations into a single list
anno_list = df['info'].tolist()
anno_list = list(itertools.chain.from_iterable(anno_list))
defaults = {'annotations': []}
result.info = helpers.init_result_info(doi, path, defaults)
clusters = []
comments = []
# Cluster similar regions
for anno in anno_list:
if anno['motivation'] == 'commenting':
comments.append(anno)
continue
elif anno['motivation'] == 'tagging':
r1 = get_rect_from_selection(anno)
matched = False
for cluster in clusters:
r2 = get_rect_from_selection(cluster)
overlap_ratio = get_overlap_ratio(r1, r2)
if overlap_ratio > MERGE_RATIO:
matched = True
r3 = merge_rects(r1, r2)
update_selector(cluster, r3)
if not matched:
update_selector(anno, r1) # still update to round rect params
clusters.append(anno)
else: # pragma: no cover
raise ValueError('Unhandled motivation')
result.info['annotations'] = clusters + comments
enki.pbclient.update_result(result)
time.sleep(throttle)
def test_path_added_to_result_info(self):
path = '/example'
info = helpers.init_result_info(None, path)
assert info['analysis_path'] == path
def test_analysis_complete_true_added_to_result_info(self):
info = helpers.init_result_info(None, None)
assert info['analysis_complete']
def test_defaults_added_to_result_info(self):
defaults = {'some_key': 'some_value'}
info = helpers.init_result_info(None, None, defaults)
assert info['some_key'] == 'some_value'
def test_doi_added_to_result_info(self):
doi = '10.5281/zenodo.890858'
info = helpers.init_result_info(doi, None)
assert info['analysis_doi'] == doi
def test_path_added_to_result_info(self):
path = '/example'
info = helpers.init_result_info(None, path)
assert info['analysis_path'] == path
def test_defaults_added_to_result_info(self):
defaults = {'some_key': 'some_value'}
info = helpers.init_result_info(None, None, defaults)
assert info['some_key'] == 'some_value'
def test_analysis_complete_true_added_to_result_info(self):
info = helpers.init_result_info(None, None)
assert info['analysis_complete']
def test_doi_added_to_result_info(self):
doi = '10.5281/zenodo.890858'
info = helpers.init_result_info(doi, None)
assert info['analysis_doi'] == doi