def set_settables(self, *args, **kwargs):
ensem = args[1]
self.parent = ensem
window = args[0]
if self.brand_new:
ensem.run_params["plot_targets"].append(self.label)
plan = ensem.run_params["output_plans"]["Simulation"]
plan.targeted.append(self.label)
plan.rewidget(True)
for subtargeted in plan.outputs:
subtargeted.append(self.label)
self.brand_new = not self.brand_new
# dictionary_support = lgm.dictionary_support_mason(window)
where_reference = ensem.run_params["variables"]
cartographer_support = lgm.cartographer_mason(window)
self.handle_widget_inheritance(*args, **kwargs)
self.parameter_space_templates = [
lgeo.interface_template_p_space_axis(
parent=self, p_sp_bounds=self._p_sp_bounds_[0], instance=self, key="value"
)
]
self.parameter_space_templates[0].set_settables(*args, **kwargs)
self.widg_templates.append(
lgm.interface_template_gui(
widgets=["spin"],
doubles=[[True]],
initials=[[float(self.value)]],
instances=[[self]],
keys=[["value"]],
box_labels=["Variable Value"],
mason=cartographer_support,
parameter_space_templates=[self.parameter_space_templates[0]],
)
)
self.widg_templates.append(
lgm.interface_template_gui(
widgets=["text"],
# mason = dictionary_support,
# wheres = [[where_reference]],
keys=[["label"]],
instances=[[self]],
initials=[[self.label]],
box_labels=["Variable Name"],
)
)
modular_object.set_settables(self, *args, from_sub=True)
def set_settables(self, *args, **kwargs): ensem = args[1] self.parent = ensem window = args[0] if self.brand_new: ensem.run_params['plot_targets'].append(self.label) plan = ensem.run_params['output_plans']['Simulation'] plan.targeted.append(self.label) plan.rewidget(True) for subtargeted in plan.outputs: subtargeted.append(self.label) self.brand_new = not self.brand_new #dictionary_support = lgm.dictionary_support_mason(window) where_reference = ensem.run_params['variables'] cartographer_support = lgm.cartographer_mason(window) self.handle_widget_inheritance(*args, **kwargs) self.parameter_space_templates =\ [lgeo.interface_template_p_space_axis(parent = self, p_sp_bounds = self._p_sp_bounds_[0], instance = self, key = 'value')] self.parameter_space_templates[0].set_settables(*args, **kwargs) self.widg_templates.append( lgm.interface_template_gui( widgets = ['spin'], doubles = [[True]], initials = [[float(self.value)]], instances = [[self]], keys = [['value']], box_labels = ['Variable Value'], mason = cartographer_support, parameter_space_templates =\ [self.parameter_space_templates[0]])) self.widg_templates.append( lgm.interface_template_gui( widgets = ['text'], #mason = dictionary_support, #wheres = [[where_reference]], keys = [['label']], instances = [[self]], initials = [[self.label]], box_labels = ['Variable Name'])) modular_object.set_settables(self, *args, from_sub = True)
def set_settables(self, *args, **kwargs): ensem = args[1] self.parent = ensem window = args[0] self.handle_widget_inheritance(*args, **kwargs) self.widg_templates.append( lgm.interface_template_gui( keys = [['values']], instances = [[self]], widgets = ['text'], box_labels = ['Vector Components'])) self.widg_templates.append( lgm.interface_template_gui( widgets = ['text'], keys = [['label']], instances = [[self]], initials = [[self.label]], box_labels = ['Vector Name'])) modular_object.set_settables(self, *args, from_sub = True)
def set_settables(self, *args, **kwargs):
ensem = args[1]
self.parent = ensem
window = args[0]
self.handle_widget_inheritance(*args, **kwargs)
self.widg_templates.append(
lgm.interface_template_gui(
keys=[["values"]], instances=[[self]], widgets=["text"], box_labels=["Vector Components"]
)
)
self.widg_templates.append(
lgm.interface_template_gui(
widgets=["text"],
keys=[["label"]],
instances=[[self]],
initials=[[self.label]],
box_labels=["Vector Name"],
)
)
modular_object.set_settables(self, *args, from_sub=True)
def set_settables(self, *args, **kwargs):
ensem = args[1]
window = args[0]
spec_list = ensem.run_params['species'].keys()
cartographer_support = lgm.cartographer_mason(window)
self.handle_widget_inheritance(*args, **kwargs)
self.parameter_space_templates =\
[lgeo.interface_template_p_space_axis(parent = self,
p_sp_bounds = self._p_sp_bounds_[0],
instance = self, key = 'rate')]
self.parameter_space_templates[0].set_settables(*args, **kwargs)
left_template = lgm.interface_template_gui(
panel_position=(0, 2),
mason=cartographer_support,
layout='vertical',
keys=[['label'], ['rate']],
instances=[[self], [self]],
widgets=['text', 'text'],
minimum_sizes=[[(400, 100)], [(100, 100)]],
box_labels=['Reaction Name', 'Reaction Rate'],
initials=[[self.label], [self.rate]],
parameter_space_templates=[
None, self.parameter_space_templates[0]
])
self.verify_agents(spec_list)
agents_template = lgm.interface_template_gui(
panel_position=(0, 0),
layout='horizontal',
widgets=['check_spin_list', 'check_spin_list'],
keys=[['used'], ['produced']],
instances=[[self], [self]],
labels=[spec_list, spec_list],
box_labels=['Reagents', 'Products'])
self.widg_templates.append(
lgm.interface_template_gui(
widgets=['splitter'],
orientations=[['horizontal']],
templates=[[left_template, agents_template]]))
modular_object.set_settables(self, *args, from_sub=True)
def set_settables(self, *args, **kwargs): ensem = args[1] self.parent = ensem window = args[0] ''' if self.brand_new: ensem.run_params['plot_targets'].append(self.label) plan = ensem.run_params['output_plans']['Simulation'] plan.targeted.append(self.label) plan.rewidget(True) for subtargeted in plan.outputs: subtargeted.append(self.label) self.brand_new = not self.brand_new ''' #dictionary_support = lgm.dictionary_support_mason(window) #where_reference = ensem.run_params['vectors'] #cartographer_support = lgm.cartographer_mason(window) self.handle_widget_inheritance(*args, **kwargs) #self.parameter_space_templates =\ # [lgeo.interface_template_p_space_axis(parent = self, # p_sp_bounds = self._p_sp_bounds_[0], # instance = self, key = 'value')] #self.parameter_space_templates[0].set_settables(*args, **kwargs) self.widg_templates.append( lgm.interface_template_gui( keys = [['values']], instances = [[self]], widgets = ['text'], box_labels = ['Vector Components'])) self.widg_templates.append( lgm.interface_template_gui( widgets = ['text'], keys = [['label']], instances = [[self]], initials = [[self.label]], box_labels = ['Vector Name'])) modular_object.set_settables(self, *args, from_sub = True)
def set_settables(self, *args, **kwargs): ensem = args[1] window = args[0] spec_list = ensem.run_params['species'].keys() cartographer_support = lgm.cartographer_mason(window) self.handle_widget_inheritance(*args, **kwargs) self.parameter_space_templates =\ [lgeo.interface_template_p_space_axis(parent = self, p_sp_bounds = self._p_sp_bounds_[0], instance = self, key = 'rate')] self.parameter_space_templates[0].set_settables(*args, **kwargs) left_template = lgm.interface_template_gui( panel_position = (0, 2), mason = cartographer_support, layout = 'vertical', keys = [['label'], ['rate']], instances = [[self], [self]], widgets = ['text', 'text'], minimum_sizes = [[(400, 100)], [(100, 100)]], box_labels = ['Reaction Name', 'Reaction Rate'], initials = [[self.label], [self.rate]], parameter_space_templates = [None, self.parameter_space_templates[0]]) self.verify_agents(spec_list) agents_template = lgm.interface_template_gui( panel_position = (0, 0), layout = 'horizontal', widgets = ['check_spin_list', 'check_spin_list'], keys = [['used'], ['produced']], instances = [[self], [self]], labels = [spec_list, spec_list], box_labels = ['Reagents', 'Products']) self.widg_templates.append( lgm.interface_template_gui( widgets = ['splitter'], orientations = [['horizontal']], templates = [[left_template, agents_template]])) modular_object.set_settables(self, *args, from_sub = True)
def set_settables(self, *args, **kwargs): window = args[0] self.parent = args[1] ensem = self.parent cartographer_support = lgm.cartographer_mason(window) self.handle_widget_inheritance(*args, **kwargs) if self.brand_new: ensem.run_params['plot_targets'].append(self.label) plan = ensem.run_params['output_plans']['Simulation'] plan.targeted.append(self.label) plan.rewidget(True) for subtargeted in plan.outputs: subtargeted.append(self.label) self.brand_new = not self.brand_new label_data_links = [lfu.interface_template_dependance( (self, 'label', self.label), linkages = [(ensem.run_params, 'plot_targets', True, 'append_list')])] #this will cause a bug if a propensity_function_maker class # with a .key attribute which should not be linked to the # species name exists - so do not use one with this module #on the other hand, a subclass which uses .key exploits this # this bug can be fixed with name mangling on the base class!! label_data_links.extend([lfu.interface_template_dependance( (self, 'label', self.label), linkages =\ [(ensem.run_params['output_plans']['Simulation'], 'targeted', True, 'append_list')])]) [label_data_links.extend([lfu.interface_template_dependance( (self, 'label', self.label), linkages =\ [(ensem.run_params['output_plans']['Simulation'], 'outputs', True, 'append_list_nested', dex)])]) for dex in range(4)] label_data_links.extend( [lfu.interface_template_dependance( (self, 'label', self.label), linkages = [(rxn, 'used', True, 'append_tuples_list', 0, 0)]) for rxn in ensem.run_params['reactions']]) label_data_links.extend( [lfu.interface_template_dependance( (self, 'label', self.label), linkages = [(rxn, 'produced', True, 'append_tuples_list', 0, 0)]) for rxn in ensem.run_params['reactions']]) window = args[1] self.handle_widget_inheritance(*args, **kwargs) self.parameter_space_templates =\ [lgeo.interface_template_p_space_axis(instance = self, key = 'initial_count', parent = self, p_sp_bounds = self._p_sp_bounds_[0], p_sp_increment = self._p_sp_increments_[0], p_sp_continuous = False)] self.parameter_space_templates[0].set_settables(*args, **kwargs) self.widg_templates.append( lgm.interface_template_gui( mason = cartographer_support, widgets = ['spin'], instances = [[self]], keys = [['initial_count']], minimum_values = [[0]], maximum_values = [[sys.maxint]], initials = [[self.initial_count]], box_labels = ['Initial Count'], parameter_space_templates =\ [self.parameter_space_templates[0]])) self.widg_templates.append( lgm.interface_template_gui( keys = [['label']], minimum_sizes = [[(150, 50)]], instances = [[self]], widgets = ['text'], box_labels = ['Species Name'])) modular_object.set_settables(self, *args, from_sub = True)
def set_settables(self, *args, **kwargs):
window = args[0]
self.parent = args[1]
ensem = self.parent
cartographer_support = lgm.cartographer_mason(window)
self.handle_widget_inheritance(*args, **kwargs)
if self.brand_new:
ensem.run_params['plot_targets'].append(self.label)
plan = ensem.run_params['output_plans']['Simulation']
plan.targeted.append(self.label)
plan.rewidget(True)
for subtargeted in plan.outputs:
subtargeted.append(self.label)
self.brand_new = not self.brand_new
label_data_links = [
lfu.interface_template_dependance(
(self, 'label', self.label),
linkages=[(ensem.run_params, 'plot_targets', True,
'append_list')])
]
#this will cause a bug if a propensity_function_maker class
# with a .key attribute which should not be linked to the
# species name exists - so do not use one with this module
#on the other hand, a subclass which uses .key exploits this
# this bug can be fixed with name mangling on the base class!!
label_data_links.extend([lfu.interface_template_dependance(
(self, 'label', self.label), linkages =\
[(ensem.run_params['output_plans']['Simulation'],
'targeted', True, 'append_list')])])
[label_data_links.extend([lfu.interface_template_dependance(
(self, 'label', self.label), linkages =\
[(ensem.run_params['output_plans']['Simulation'],
'outputs', True, 'append_list_nested', dex)])])
for dex in range(4)]
label_data_links.extend([
lfu.interface_template_dependance(
(self, 'label', self.label),
linkages=[(rxn, 'used', True, 'append_tuples_list', 0, 0)])
for rxn in ensem.run_params['reactions']
])
label_data_links.extend([
lfu.interface_template_dependance(
(self, 'label', self.label),
linkages=[(rxn, 'produced', True, 'append_tuples_list', 0, 0)])
for rxn in ensem.run_params['reactions']
])
window = args[1]
self.handle_widget_inheritance(*args, **kwargs)
self.parameter_space_templates =\
[lgeo.interface_template_p_space_axis(instance = self,
key = 'initial_count', parent = self,
p_sp_bounds = self._p_sp_bounds_[0],
p_sp_increment = self._p_sp_increments_[0],
p_sp_continuous = False)]
self.parameter_space_templates[0].set_settables(*args, **kwargs)
self.widg_templates.append(
lgm.interface_template_gui(
mason = cartographer_support,
widgets = ['spin'],
instances = [[self]],
keys = [['initial_count']],
minimum_values = [[0]],
maximum_values = [[sys.maxint]],
initials = [[self.initial_count]],
box_labels = ['Initial Count'],
parameter_space_templates =\
[self.parameter_space_templates[0]]))
self.widg_templates.append(
lgm.interface_template_gui(keys=[['label']],
minimum_sizes=[[(150, 50)]],
instances=[[self]],
widgets=['text'],
box_labels=['Species Name']))
modular_object.set_settables(self, *args, from_sub=True)
