Python SBMLlayout.getSBMLString Beispiele

Beispiel #1

from libsbml_draw.model.sbml_layout import SBMLlayout

model_file_name = "model.xml"

model_file = Path(
    pkg_resources.resource_filename("libsbml_draw",
                                    "model/data/" + model_file_name))

sl = SBMLlayout()

sl.loadSBMLFile(str(model_file))

sl._describeModel()

sl.drawNetwork()

ss = SBMLlayout()

sbmlString = sl.getSBMLString()

ss.loadSBMLString(sbmlString)

ss._describeModel()

ss.drawNetwork()

ss.regenerateLayoutAndNetwork()

ss.drawNetwork()

Beispiel #2

Datei: demo_loadSBML.py Projekt: nrhawkins/libsbml-draw

from pathlib import Path
import pkg_resources

from libsbml_draw.model.sbml_layout import SBMLlayout

model_file_name = "model.xml"

model_file = Path(
    pkg_resources.resource_filename("libsbml_draw",
                                    "model/data/" + model_file_name))

sl = SBMLlayout()

sl.loadSBMLFile(str(model_file))

sl._describeModel()

sl.drawNetwork()

sl_str = sl.getSBMLString()

ss = SBMLlayout()

ss.loadSBMLString(sl_str)

ss._describeModel()

ss.drawNetwork()