match = CONDOR_JOBID_EXTRACT_REGEX().search(output)
if not match:
raise errors.ExtractionError, "Unexpected response from Condor: %r" % output
return match.group(1)
def slurm_jobid_extract(output):
match = SLURM_JOBID_EXTRACT_REGEX().search(output)
if not match:
raise errors.ExtractionError, "Unexpected response from Slurm: %r" % output
return match.group(1)
# Regex caching
from libtbx.queuing_system_utils.processing import util
LSF_JOBID_EXTRACT_REGEX = util.get_lazy_initialized_regex(
pattern=r"Job <(\d+)> is submitted", )
CONDOR_JOBID_EXTRACT_REGEX = util.get_lazy_initialized_regex(
pattern=r"\d+ job\(s\) submitted to cluster (\d+)\.", )
SLURM_JOBID_EXTRACT_REGEX = util.get_lazy_initialized_regex(
pattern=r"Submitted batch job (\d+)")
from __future__ import division
import subprocess
import time
from libtbx.queuing_system_utils.processing import util
# These are not very efficient
SGE_REGEX = util.get_lazy_initialized_regex( pattern = r"Following jobs do not exist" )
def sge_single_evaluate(out, err):
"Evaluates SGE text output in single mode"
if err:
if SGE_REGEX().search( err ):
return True
else:
raise RuntimeError, "SGE error:\n%s" % err
else:
return False
def lsf_single_evaluate(out, err):
"Evaluates LSF text output in single mode"
if err:
return True
from __future__ import absolute_import, division, print_function
import subprocess
import time
from libtbx.queuing_system_utils.processing import util
from libtbx.queuing_system_utils.processing import errors
# These are not very efficient
SGE_REGEX = util.get_lazy_initialized_regex( pattern = r"Following jobs do not exist" )
def sge_single_evaluate(out, err):
"Evaluates SGE text output in single mode"
if err:
if SGE_REGEX().search( err ):
return True
else:
raise errors.AbnormalExitError("SGE error:\n%s" % err)
else:
return False
def lsf_single_evaluate(out, err):
"Evaluates LSF text output in single mode"
if err:
return True
if not match:
raise RuntimeError, "Unexpected response from queuing system"
return match.group(1)
def slurm_jobid_extract(output):
match = SLURM_JOBID_EXTRACT_REGEX().search( output )
if not match:
raise RuntimeError, "Unexpected response from queuing system"
return match.group(1)
# Regex caching
from libtbx.queuing_system_utils.processing import util
LSF_JOBID_EXTRACT_REGEX = util.get_lazy_initialized_regex(
pattern = r"Job <(\d+)> is submitted",
)
CONDOR_JOBID_EXTRACT_REGEX = util.get_lazy_initialized_regex(
pattern = r"\d+ job\(s\) submitted to cluster (\d+)\.",
)
SLURM_JOBID_EXTRACT_REGEX = util.get_lazy_initialized_regex(
pattern = r"Submitted batch job (\d+)"
)