#ask the user for database to process
files = getFilesToProcess()
for file in files:
# connect to database
connection = sqlite3.connect(file)
# create an animalPool, which basically contains your animals
animalPool = AnimalPool()
# load infos about the animals
animalPool.loadAnimals(connection)
# load all detection (positions) of all animals for the first hour
animalPool.loadDetection(start=0, end=oneHour)
eventTimeLine = EventTimeLine(connection,
"Oral-genital Contact",
idA=1,
idB=2,
minFrame=0,
maxFrame=oneHour)
print("Event list for label ", eventTimeLine.eventNameWithId)
print("for animal 1:", animalPool.getAnimalDictionnary()[1].RFID)
print("for animal 2:", animalPool.getAnimalDictionnary()[2].RFID)
print("Number of events:", len(eventTimeLine.getEventList()))
print("start frame", "end frame", "duration(in frame)")
for event in eventTimeLine.eventList:
@author: Fab
'''
import sqlite3
from lmtanalysis.FileUtil import getFilesToProcess
from lmtanalysis.Animal import AnimalPool
from lmtanalysis.Measure import oneHour
if __name__ == '__main__':
#ask the user for database to process
files = getFilesToProcess()
for file in files:
# connect to database
connection = sqlite3.connect(file)
# create an animalPool, which basically contains your animals
animalPool = AnimalPool()
# load infos about the animals
animalPool.loadAnimals(connection)
# load all detection (positions) of all animals for the first hour
animalPool.loadDetection(start=0, end=oneHour, lightLoad=True)
# plot and show trajectory
animalPool.plotTrajectory()
if __name__ == '__main__':
#ask the user for database to process
files = getFilesToProcess()
for file in files:
# connect to database
connection = sqlite3.connect( file )
# create an animalPool, which basically contains your animals
animalPool = AnimalPool()
# load infos about the animals
animalPool.loadAnimals( connection )
animalPool.loadDetection( 0, 3*24*oneHour )
min = 0
max = 24*oneHour
for animal in animalPool.getAnimalList():
bt = animal.getBodyThreshold( tmin= min, tmax = max )
bs = animal.getMedianBodyHeight( tmin= min , tmax = max )
print ( "min:\t" , str(min), "\tmax:\t", str(max), "\tAnimal:\t" , str(animal.baseId), "\tBT:\t " , str(bt) , "\tBS:\t" , str(bs) )
min = 24*oneHour
max = 2*24*oneHour
for animal in animalPool.getAnimalList():
bt = animal.getBodyThreshold( tmin= min, tmax = max )
bs = animal.getMedianBodyHeight( tmin= min , tmax = max )
print ( "min:\t" , str(min), "\tmax:\t", str(max), "\tAnimal:\t" , str(animal.baseId), "\tBT:\t " , str(bt) , "\tBS:\t" , str(bs) )
from lmtanalysis.FileUtil import getFilesToProcess
from lmtanalysis.Animal import AnimalPool
from lmtanalysis.Measure import oneHour, oneMinute
if __name__ == '__main__':
#ask the user for database to process
files = getFilesToProcess()
for file in files:
# connect to database
connection = sqlite3.connect(file)
# create an animalPool, which basically contains your animals
animalPool = AnimalPool()
# load infos about the animals
animalPool.loadAnimals(connection)
# load all detection (positions) of all animals for the first hour
animalPool.loadDetection(start=0, end=10 * oneMinute)
# filter detection by area (in cm from the top left of the cage)
animalPool.filterDetectionByArea(0, 30, 25, 50)
# loop over all animals in this database
for animal in animalPool.getAnimalList():
animal.plotTrajectory3D()
minT = 6 * oneHour
#maxT = 3*oneDay
maxT = (6 + 1) * oneHour
for file in files:
# connect to database
connection = sqlite3.connect(file)
# create an animalPool, which basically contains your animals
animalPool = AnimalPool()
# load infos about the animals
animalPool.loadAnimals(connection)
animalPool.loadDetection(0, 1 * oneHour)
'''
min = 0
max = 24*oneHour
for animal in animalPool.getAnimalList():
bt = animal.getBodyThreshold( tmin= min, tmax = max )
bs = animal.getMedianBodyHeight( tmin= min , tmax = max )
print ( "min:\t" , str(min), "\tmax:\t", str(max), "\tAnimal:\t" , str(animal.baseId), "\tBT:\t " , str(bt) , "\tBS:\t" , str(bs) )
print("---")
for start in range( 0,24 ):
print("**********")
min = start*oneHour
max = (start+1)*oneHour
for animal in animalPool.getAnimalList():
bt = animal.getBodyThreshold( tmin= min, tmax = max )