def main(*args, **settings):
from pyramid.config import Configurator
from pyramid.events import NewRequest, ContextFound
from pyramid.authentication import BasicAuthAuthenticationPolicy
from pyramid.authorization import ACLAuthorizationPolicy
from pyramid.renderers import JSON, JSONP
logger.info('Start registry api...')
read_users(settings['auth.file'])
config = Configurator(autocommit=True,
settings=settings,
authentication_policy=BasicAuthAuthenticationPolicy(
auth_check, __name__),
authorization_policy=ACLAuthorizationPolicy(),
root_factory=Root,
route_prefix=ROUTE_PREFIX)
config.include('pyramid_exclog')
config.add_forbidden_view(forbidden)
config.add_request_method(request_params, 'params', reify=True)
config.add_request_method(authenticated_role, reify=True)
config.add_renderer('prettyjson', JSON(indent=4))
config.add_renderer('jsonp', JSONP(param_name='opt_jsonp'))
config.add_renderer('prettyjsonp', JSONP(indent=4, param_name='opt_jsonp'))
config.add_subscriber(add_logging_context, NewRequest)
config.add_subscriber(set_logging_context, ContextFound)
config.add_subscriber(set_renderer, NewRequest)
config.add_route('health', '/health')
config.add_route('registry', '/registry/{param}.json')
config.scan('openprocurement.medicines.registry.api.views')
return config.make_wsgi_app()
def configure_routes(config):
cache_max_age = 86400 * 365
config.add_static_view('static', 'static', cache_max_age=cache_max_age)
config.add_static_view('css', 'static/css', cache_max_age=cache_max_age)
config.add_static_view('img', 'static/img', cache_max_age=cache_max_age)
config.add_static_view('js', 'static/js', cache_max_age=cache_max_age)
config.add_route('home', '/')
def main(global_config, **settings):
""" This function returns a Pyramid WSGI application.
"""
# support logging in python3
logging.config.fileConfig(settings['logging.config'],
disable_existing_loggers=False)
config = Configurator(settings=settings)
config.set_root_factory(RootFactory)
config.add_route('index', '/')
config.add_route('secure', '/secure')
config.scan()
return config.make_wsgi_app()
def includeme(config):
""" Configure the app """
settings = config.get_settings()
init_celery(settings)
config.add_route('tasks_active', '/tasks/active')
config.add_route('tasks_registered', '/tasks/registered')
config.add_route('tasks_reserved', '/tasks/reserved')
config.add_route('tasks_scheduled', '/tasks/scheduled')
config.scan(__package__ + '.views')
def include_routes(config):
config.add_route('login', '/login')
config.add_route('logout', '/logout')
config.add_route('forbidden', '/forbidden')
config.add_route('home', 'cot/chart')
config.include(commodity_routes, route_prefix='commodities')
config.include(financial_routes, route_prefix='financials')
def make_wsgi_app(settings):
config = Configurator(
settings=settings,
root_factory=RootFactory,
session_factory=pyramid.session.UnencryptedCookieSessionFactoryConfig(
'secret_shit',
cookie_name='s',
timeout=60 * 60 * 24 * 3,
cookie_max_age=60 * 60 * 24 * 3,
),
authentication_policy=pyramid.authentication.
SessionAuthenticationPolicy(prefix='auth.',
callback=group_finder,
debug=False),
authorization_policy=pyramid.authorization.ACLAuthorizationPolicy(),
)
config.set_request_property(
lambda request: lambda permission: pyramid.security.has_permission(
permission, request.root, request), 'has_permission')
config.add_tween('mistress_stat.stat_server.autocommit_tween_factory',
under=pyramid.tweens.EXCVIEW)
config.add_tween('sapyens.db.notfound_tween_factory',
under=pyramid.tweens.EXCVIEW)
config.add_subscriber(_add_renderer_globals, pyramid.events.BeforeRender)
config.add_static_view('static',
'mistress_stat:static',
cache_max_age=3600)
config.add_route('login', '/login')
login_view = LoginView(
lambda _, request: request.registry.settings['password'])
config.add_view(login_view,
route_name='login',
renderer='sapyens.views:templates/login.mako')
config.add_forbidden_view(login_view,
renderer='sapyens.views:templates/login.mako')
config.add_route('logout', '/logout')
config.add_view(sapyens.views.LogoutView('root'), route_name='logout')
config.scan(package='mistress_stat')
return config.make_wsgi_app()
def main(global_config, **settings):
""" This function returns a Pyramid WSGI application.
"""
# support logging in python3
logging.config.fileConfig(
settings['logging.config'],
disable_existing_loggers=False
)
config = Configurator(settings=settings)
config.set_root_factory(RootFactory)
config.add_route('index', '/')
config.add_route('secure', '/secure')
config.scan()
return config.make_wsgi_app()
def includeme(config):
config.include('pyramid_jinja2')
config.add_jinja2_search_path("dashboard:templates")
config.commit() # commit to allow access to jinja environment
# request methods
config.add_request_method(get_request_user, 'user', reify=True)
config.get_jinja2_environment().filters['format_date'] = format_date
config.get_jinja2_environment().filters['format_time'] = format_time
config.get_jinja2_environment().filters['format_decimal'] = format_decimal
config.get_jinja2_environment().filters['format_percent'] = format_percent
config.get_jinja2_environment().filters['format_number'] = format_number
config.get_jinja2_environment().filters['datetime'] = (
date_string_to_datetime)
config.add_static_view('static', 'dashboard:static', cache_max_age=3600)
config.add_route('default', '/')
config.add_route('submissions', '/submissions/*traverse')
config.scan()
def main(global_config, **settings):
""" This function returns a Pyramid WSGI application."""
session_factory = SignedCookieSessionFactory('itsaseekreet',
max_age=31536000,
timeout=31536000) # TODO:
# support logging in python3
logging.config.fileConfig(settings['logging.config'],
disable_existing_loggers=False)
config = Configurator(settings=settings,
session_factory=session_factory,
root_factory=Root)
# Addons
config.include('pyramid_chameleon')
# Security policies
authn_policy = AuthTktAuthenticationPolicy(
'qwerty',
callback=groupfinder, # TODO:
hashalg='sha512')
authz_policy = ACLAuthorizationPolicy()
config.set_authentication_policy(authn_policy)
config.set_authorization_policy(authz_policy)
# Routing
config.add_route('home', '/')
config.add_route('second', '/second')
config.add_route('login', '/login')
config.add_route('auth', '/auth')
config.add_route('logout', '/logout')
config.add_static_view('deform_static', 'deform:static/')
config.scan()
return config.make_wsgi_app()
def make_wsgi_app (settings):
config = Configurator(
settings = settings,
root_factory = RootFactory,
session_factory = pyramid.session.UnencryptedCookieSessionFactoryConfig(
'secret_shit', cookie_name = 's', timeout = 60*60*24*3, cookie_max_age = 60*60*24*3,
),
authentication_policy = pyramid.authentication.SessionAuthenticationPolicy(
prefix = 'auth.',
callback = group_finder,
debug = False
),
authorization_policy = pyramid.authorization.ACLAuthorizationPolicy(),
)
config.set_request_property(
lambda request: lambda permission: pyramid.security.has_permission(permission, request.root, request),
'has_permission'
)
config.add_tween('mistress_stat.stat_server.autocommit_tween_factory', under = pyramid.tweens.EXCVIEW)
config.add_tween('sapyens.db.notfound_tween_factory', under = pyramid.tweens.EXCVIEW)
config.add_subscriber(_add_renderer_globals, pyramid.events.BeforeRender)
config.add_static_view('static', 'mistress_stat:static', cache_max_age=3600)
config.add_route('login', '/login')
login_view = LoginView(lambda _, request: request.registry.settings['password'])
config.add_view(login_view, route_name = 'login', renderer = 'sapyens.views:templates/login.mako')
config.add_forbidden_view(login_view, renderer = 'sapyens.views:templates/login.mako')
config.add_route('logout', '/logout')
config.add_view(sapyens.views.LogoutView('root'), route_name = 'logout')
config.scan(package = 'mistress_stat')
return config.make_wsgi_app()
def main(global_config, **settings):
logging.config.fileConfig(settings['logging.config'], disable_existing_loggers=False)
""" This function returns a Pyramid WSGI application.
"""
config = Configurator(settings=settings, root_factory='jungo.model.RootFactory')
config.include('pyramid_chameleon')
config.add_static_view('static', 'static', cache_max_age=3600)
config.add_route('home', '/old-home')
config.add_route('search', '/')
config.add_route('common_interests', '/common-interests')
config.add_route('profile', '/me')
config.add_route('user', '/user/{username}')
config.add_route('login', '/login')
config.add_route('logout', '/logout')
config.add_route('interest_match', '/interest-match/{username}/{interest_id}')
config.add_route('api_add_user', '/api/user', request_method='POST')
config.add_route('api_user', '/api/user/{username}', request_method='GET')
config.add_route('api_add_interests', '/api/user/{username}/interests', request_method='POST')
config.add_route('api_common_interests', '/api/common-interests', request_method='GET')
authn_policy = AuthTktAuthenticationPolicy('super secret magic', callback=groupfinder, hashalg='sha512')
authz_policy = ACLAuthorizationPolicy()
config.set_authentication_policy(authn_policy)
config.set_authorization_policy(authz_policy)
config.set_session_factory(session_factory)
db_url = settings['mongo_uri']
config.registry.client = pymongo.MongoClient(db_url)
def add_db(request):
uri = urlparse.urlparse(db_url)
db = config.registry.client[uri.path[1:]]
if uri.username and uri.password:
db.authenticate(uri.username, uri.password)
return DataStore(db)
add_db(None).create_indices()
config.add_request_method(add_db, 'db', reify=True)
config.scan()
return config.make_wsgi_app()
def includeme(config):
config.include('dashboard')
config.commit()
config.get_jinja2_environment().filters['friendly_group_name'] =\
friendly_group_name
# hook up our submission handlers
hook_submission_handlers()
# request methods
config.add_request_method(get_request_user, 'user', reify=True)
config.add_request_method(is_current_path)
# pyramid_jinja2 is already included by Dashboard
config.add_jinja2_search_path("composting:templates")
config.add_renderer('xlsx',
'composting.views.renderers.TablibXLSXRenderer')
config.add_static_view('static', 'composting:static', cache_max_age=3600)
config.add_static_view('docs', '../docs/_build/html', cache_max_age=3600)
config.add_route('default', '/')
config.add_route('auth', '/auth/{action}')
config.add_route('oauth', '/oauth/{action}')
config.add_route('municipalities',
'/municipalities/*traverse',
factory=MunicipalityFactory)
config.add_route('submissions',
'/submissions/*traverse',
factory=SubmissionFactory)
config.add_route('skips', '/skips/*traverse', factory=SkipFactory)
config.add_route('users', '/users/*traverse', factory=UserFactory)
config.scan()
def financial_routes(config):
config.add_route('fin_chart', '/chart')
config.add_route('fin_chart_data', '/chart/{code}')
config.add_route('fin_prices', '/prices')
def commodity_routes(config):
config.add_route('comm_chart', '/chart')
config.add_route('comm_chart_data', '/chart/{code}')
config.add_route('comm_prices', '/prices')
def includeme(config):
config.include('pyramid_jinja2')
config.commit()
config.add_jinja2_search_path("whoahqa:templates")
config.get_jinja2_environment().filters['format_date'] = \
format_date_for_locale
config.get_jinja2_environment().filters['format_location_name'] = \
format_location_name
config.get_jinja2_environment().filters['round_or_none'] = round_or_none
config.add_static_view('static', 'static', cache_max_age=3600)
config.add_route('default', '/')
config.add_route('logout', '/logout/')
config.add_route('push', '/push/{action}')
config.add_route('locale', '/locale/')
config.add_route('admin', '/admin/*traverse', factory=UserFactory)
config.add_route('auth', '/auth/{action}')
config.add_route('users', '/users/*traverse',
factory=UserFactory)
config.add_route('clinics', '/clinics/*traverse',
factory=ClinicFactory)
config.add_route('submissions', '/submissions/*traverse',
factory=SubmissionFactory)
config.add_route('periods', '/reporting-periods/*traverse',
factory=ReportingPeriodFactory)
config.add_route('municipalities', '/municipalities/*traverse',
factory=LocationFactory)
config.add_route('states', '/states/*traverse',
factory=LocationFactory)
config.add_route('locations', '/locations/*traverse',
factory=LocationFactory)
config.scan()
def main(global_config, **settings):
""" This function returns a Pyramid WSGI application.
"""
config = Configurator(settings=settings)
config.include('pyramid_chameleon')
config.add_subscriber(add_cors_headers_response_callback, NewRequest)
social_providers = config.registry.settings['allow_auth'].split(',')
if 'google' in social_providers:
config.include('velruse.providers.google_oauth2')
config.add_google_oauth2_login_from_settings()
if 'github' in social_providers:
config.include('velruse.providers.github')
config.add_github_login_from_settings()
config.add_subscriber(before_render, BeforeRender)
my_session_factory = session_factory_from_settings(settings)
config.set_session_factory(my_session_factory)
yaml_config = None
try:
with open(config.registry.settings['config'], 'r') as ymlfile:
yaml_config = yaml.load(ymlfile)
if yaml_config['log_config'] is not None:
for handler in list(
yaml_config['log_config']['handlers'].keys()):
yaml_config['log_config']['handlers'][handler] = dict(
yaml_config['log_config']['handlers'][handler])
logging.config.dictConfig(yaml_config['log_config'])
except Exception as e:
logging.error('No config file found or declared: ' + str(e))
logging.warn('Start bioshadock web server')
config.registry.config = yaml_config
mongo = MongoClient(yaml_config['services']['mongo']['url'])
dbmongo = mongo[yaml_config['services']['mongo']['db']]
config.registry.db_mongo = dbmongo
r = redis.StrictRedis(host=yaml_config['services']['redis']['host'],
port=yaml_config['services']['redis']['port'],
db=yaml_config['services']['redis']['db'])
config.registry.db_redis = r
config.registry.admin = yaml_config['general']['admin'].split(',')
config.registry.es = Elasticsearch(
yaml_config['services']['elastic']['host'].split(','))
config.registry.ldap_server = None
config.registry.con = None
if yaml_config['ldap']['use'] == 1:
# Check if in ldap
#import ldap
from ldap3 import Server, Connection, AUTH_SIMPLE, STRATEGY_SYNC, STRATEGY_ASYNC_THREADED, SEARCH_SCOPE_WHOLE_SUBTREE, GET_ALL_INFO
try:
ldap_host = yaml_config['ldap']['host']
ldap_port = yaml_config['ldap']['port']
config.registry.ldap_server = Server(ldap_host,
port=ldap_port,
get_info=GET_ALL_INFO)
except Exception as err:
logging.error(str(err))
sys.exit(1)
config.add_static_view('static', 'static', cache_max_age=3600)
runenv = "dist"
if "BIOSHADOCK_ENV" in os.environ and os.environ["BIOSHADOCK_ENV"] == "dev":
runenv = "app"
config.registry.runenv = runenv
config.add_static_view('app', 'shadock:webapp/' + runenv + '/')
config.add_route('home', '/')
config.add_route('config', '/config')
config.add_route('search', '/search')
config.add_route('user_is_logged', '/user/logged')
config.add_route('users', '/user')
config.add_route('user_logout', '/user/logout')
config.add_route('user_bind', '/user/bind')
config.add_route('user', '/user/{id}')
config.add_route('containers', '/container')
config.add_route('containers_all', '/container/all')
config.add_route('containers_latest', '/container/latest')
config.add_route('containers_search', '/container/search')
config.add_route('containers_new', '/container/new')
config.add_route('container_manifest', '/container/manifest/*id')
config.add_route('container_tags', '/container/tags/*id')
config.add_route('container_dockerfile', '/container/dockerfile/*id')
config.add_route('container_git', '/container/git/*id')
config.add_route('container_tag', '/container/tag/*id')
config.add_route('container_elixir', '/container/elixir/*id')
config.add_route('container_metaelixir', '/container/metaelixir/*id')
config.add_route('container_vulnerabilities',
'/container/vulnerabilities/*id')
config.add_route('container', '/container/*id')
config.add_route('clair_notification', '/clair/notify')
config.add_route('builds', '/builds/*id')
config.add_route('build', '/build/{id}')
config.add_route('api_users', '/v1/users/')
config.add_route('api_library', '/v1/repositories/{image}/')
config.add_route('api_library_auth', '/v1/repositories/{image}/auth')
config.add_route('api_library_images', '/v1/repositories/{image}/images')
config.add_route('api_repositories_images_get',
'/v1/repositories/{namespace}/{image}/images')
config.add_route('api_repositories_images_put',
'/v1/repositories/{namespace}/{image}/images')
config.add_route('api_repositories_images_layer_access',
'/v1/repositories/{namespace}/{image}/layer/{id}/access')
config.add_route('api_repositories',
'/v1/repositories/{namespace}/{image}/')
config.add_route('api_repositories_auth',
'/v1/repositories/{namespace}/{image}/auth')
config.add_route('api_ping', '/v1/_ping')
config.add_route('api2_ping', '/v2/_ping')
config.add_route('api2_token', '/v2/token/')
config.add_route('api2_other', '/v2/*api')
config.add_route('api_other', '/v1/*api')
# GA4GH API
config.add_route('ga4gh_tools', '/api/ga4gh/v1/tools')
config.add_route('ga4gh_tools_id', '/api/ga4gh/v1/tools/{id}')
config.add_route('ga4gh_tools_id_versions',
'/api/ga4gh/v1/tools/{id}/versions')
config.add_route('ga4gh_tools_id_version',
'/api/ga4gh/v1/tools/{id}/versions/{versionid}')
config.add_route(
'ga4gh_tools_id_version_descriptor',
'/api/ga4gh/v1/tools/{id}/versions/{versionid}/{type}/descriptor')
config.add_route(
'ga4gh_tools_id_version_descriptor_file_relative_path',
'/api/ga4gh/v1/tools/{id}/versions/{versionid}/{type}/descriptor/{relativepath}'
)
config.add_route(
'ga4gh_tools_id_version_dockerfile',
'/api/ga4gh/v1/tools/{id}/versions/{versionid}/dockerfile')
config.add_route('ga4gh_metadata', '/api/ga4gh/v1/metadata')
config.add_route('ga4gh_tool_classes', '/api/ga4gh/v1/tool-classes')
# Deprecated
config.add_route('ga4gh_tools_query', '/api/ga4gh/v1/tools/query')
config.add_route('ga4gh_tool_descriptor',
'/api/ga4gh/v1/tools/{id}/descriptor')
config.add_route('ga4gh_tool_dockerfile',
'/api/ga4gh/v1/tools/{id}/dockerfile')
config.scan()
json_renderer = JSON()
def pymongo_adapter(obj, request):
return json_util.default(obj)
json_renderer.add_adapter(ObjectId, pymongo_adapter)
json_renderer.add_adapter(datetime.datetime, pymongo_adapter)
config.add_renderer('json', json_renderer)
return config.make_wsgi_app()