def test_config_utils():
"""Test the config_utils module"""
opt_object = EOUtilOptions()
par_dict = opt_object.toDict()
for key, val in par_dict.items():
cloned = EOUtilOptions.clone_param(key)
assert isinstance(val, cloned.dtype) or val is None
class TemplateConfig(TmplRaftTableAnalysisConfig):
"""Configuration for TempalteTask"""
insuffix = EOUtilOptions.clone_param('insuffix', default='tmplsuffix')
outsuffix = EOUtilOptions.clone_param('outsuffix',
default='tmplsuffix_stats')
bias = EOUtilOptions.clone_param('bias')
superbias = EOUtilOptions.clone_param('superbias')
class SuperdarkRaftConfig(DarkAnalysisConfig):
"""Configuration for SuperdarkRaftTask"""
filekey = EOUtilOptions.clone_param('filekey', default='sdark')
infilekey = EOUtilOptions.clone_param('infilekey')
slots = EOUtilOptions.clone_param('slots')
stats_hist = EOUtilOptions.clone_param('stats_hist')
mosaic = EOUtilOptions.clone_param('mosaic')
class RaftAnalysisConfig(MetaConfig):
"""Configuration for RaftAnalysisTask"""
dataset = EOUtilOptions.clone_param('dataset')
runs = EOUtilOptions.clone_param('runs')
rafts = EOUtilOptions.clone_param('rafts')
skip = EOUtilOptions.clone_param('skip')
plot = EOUtilOptions.clone_param('plot')
class PlotConfig(pexConfig.Config):
"""Configuration for Plotting"""
infile = EOUtilOptions.clone_param('infile')
outfile = EOUtilOptions.clone_param('outfile')
bias = EOUtilOptions.clone_param('bias')
superbias = EOUtilOptions.clone_param('superbias')
vmin = EOUtilOptions.clone_param('vmin')
vmax = EOUtilOptions.clone_param('vmax')
nbins = EOUtilOptions.clone_param('nbins')
subtract_mean = EOUtilOptions.clone_param('subtract_mean')
stats_hist = EOUtilOptions.clone_param('stats_hist')
mosaic = EOUtilOptions.clone_param('mosaic')
class SuperdarkStabilityConfig(SuperdarkSlotTableAnalysisConfig):
"""Configuration for SuperdarkStabilityTask"""
stat = EOUtilOptions.clone_param('stat')
skip = EOUtilOptions.clone_param('skip')
plot = EOUtilOptions.clone_param('plot')
stats_hist = EOUtilOptions.clone_param('stats_hist')
filekey = EOUtilOptions.clone_param('filekey')
vmin = EOUtilOptions.clone_param('vmin')
vmax = EOUtilOptions.clone_param('vmax')
nbins = EOUtilOptions.clone_param('nbins')
bitpix = EOUtilOptions.clone_param('bitpix')
class SuperbiasConfig(BiasAnalysisConfig):
"""Configuration for BiasVRowTask"""
stat = EOUtilOptions.clone_param('stat')
bitpix = EOUtilOptions.clone_param('bitpix')
skip = EOUtilOptions.clone_param('skip')
plot = EOUtilOptions.clone_param('plot')
stats_hist = EOUtilOptions.clone_param('stats_hist')
filekey = EOUtilOptions.clone_param('filekey')
vmin = EOUtilOptions.clone_param('vmin')
vmax = EOUtilOptions.clone_param('vmax')
nbins = EOUtilOptions.clone_param('nbins')
class SlotAnalysisConfig(MetaConfig):
"""Configuration for SlotAnalysisTask"""
dataset = EOUtilOptions.clone_param('dataset')
runs = EOUtilOptions.clone_param('runs')
teststand = EOUtilOptions.clone_param('teststand')
overwrite = EOUtilOptions.clone_param('overwrite')
rafts = EOUtilOptions.clone_param('rafts')
slots = EOUtilOptions.clone_param('slots')
skip = EOUtilOptions.clone_param('skip')
plot = EOUtilOptions.clone_param('plot')
class TrapConfig(PpumpAnalysisConfig):
"""Configuration for TrapTask"""
filekey = EOUtilOptions.clone_param('filekey', default='trap')
cycles = EOUtilOptions.clone_param('cycles')
threshold = EOUtilOptions.clone_param('threshold')
C2_thresh = EOUtilOptions.clone_param('C2_thresh')
C3_thresh = EOUtilOptions.clone_param('C3_thresh')
bkg_nx = EOUtilOptions.clone_param('bkg_nx')
bkg_ny = EOUtilOptions.clone_param('bkg_ny')
edge_rolloff = EOUtilOptions.clone_param('edge_rolloff')
class CalibStackConfig(MetaConfig):
"""Configuration for CalibStackTask"""
dataset = EOUtilOptions.clone_param('dataset')
runs = EOUtilOptions.clone_param('runs')
rafts = EOUtilOptions.clone_param('rafts')
slots = EOUtilOptions.clone_param('slots')
outdir = EOUtilOptions.clone_param('outdir')
skip = EOUtilOptions.clone_param('skip')
plot = EOUtilOptions.clone_param('plot')
stats_hist = EOUtilOptions.clone_param('stats_hist')
class ReportConfig(BaseAnalysisConfig):
"""Configuration for html report"""
indir = EOUtilOptions.clone_param('indir')
htmldir = EOUtilOptions.clone_param('htmldir')
template_file = EOUtilOptions.clone_param('template_file')
css_file = EOUtilOptions.clone_param('css_file')
plot_report_action = EOUtilOptions.clone_param('plot_report_action')
overwrite = EOUtilOptions.clone_param('overwrite')
teststand = EOUtilOptions.clone_param('teststand')
class EOResultsRaftConfig(AnalysisConfig):
"""Configuration for EOResultsRaftTask"""
outdir = EOUtilOptions.clone_param('outdir')
teststand = EOUtilOptions.clone_param('teststand')
run = EOUtilOptions.clone_param('run')
raft = EOUtilOptions.clone_param('raft')
calib = EOUtilOptions.clone_param('calib', default='eotest')
infilekey = EOUtilOptions.clone_param('infilekey', default='results')
filekey = EOUtilOptions.clone_param('filekey', default='results')
class DefectAnalysisConfig(MetaConfig):
"""Configuration for DefectAnalysisTask"""
dataset = EOUtilOptions.clone_param('dataset')
runs = EOUtilOptions.clone_param('runs')
rafts = EOUtilOptions.clone_param('rafts')
slots = EOUtilOptions.clone_param('slots')
plot = EOUtilOptions.clone_param('plot')
skip = EOUtilOptions.clone_param('skip')
mosaic = EOUtilOptions.clone_param('mosaic')
class NonlinearityConfig(FlatSlotTableAnalysisConfig):
"""Configuration for NonlinearityTask"""
infilekey = EOUtilOptions.clone_param('infilekey', default='flat-pair')
filekey = EOUtilOptions.clone_param('filekey', default='flat-nonlin')
nonlin_spline_ext = EOUtilOptions.clone_param('nonlin_spline_ext')
nonlin_spline_smooth = EOUtilOptions.clone_param('nonlin_spline_smooth')
num_profile_points = EOUtilOptions.clone_param('num_profile_points')
vmin = EOUtilOptions.clone_param('vmin', default=1e3)
vmax = EOUtilOptions.clone_param('vmax', default=1e5)
class SuperflatConfig(SflatAnalysisConfig):
"""Configuration for SuperflatTask"""
stat = EOUtilOptions.clone_param('stat')
bitpix = EOUtilOptions.clone_param('bitpix')
skip = EOUtilOptions.clone_param('skip')
plot = EOUtilOptions.clone_param('plot')
stats_hist = EOUtilOptions.clone_param('stats_hist')
filekey = EOUtilOptions.clone_param('filekey')
class EOResultsSummaryConfig(AnalysisConfig):
"""Configuration for EOResultsTask"""
outdir = EOUtilOptions.clone_param('outdir')
teststand = EOUtilOptions.clone_param('teststand')
dataset = EOUtilOptions.clone_param('dataset')
calib = EOUtilOptions.clone_param('calib', default='eotest')
infilekey = EOUtilOptions.clone_param('infilekey', default='results')
filekey = EOUtilOptions.clone_param('filekey', default='results_sum')
class BiasRunTableAnalysisConfig(AnalysisConfig):
"""Configuration for BiasRunTableAnalysisTask"""
outdir = EOUtilOptions.clone_param('outdir')
teststand = EOUtilOptions.clone_param('teststand')
run = EOUtilOptions.clone_param('run')
calib = EOUtilOptions.clone_param('calib', default='defualt')
infilekey = EOUtilOptions.clone_param('infilekey')
filekey = EOUtilOptions.clone_param('filekey')
class OscanAmpStackSummaryConfig(BiasSummaryAnalysisConfig):
"""Configuration for CorrelWRTOScanSummaryTask"""
infilekey = EOUtilOptions.clone_param('infilekey',
default='biasosstack-stats')
filekey = EOUtilOptions.clone_param('filekey', default='biasosstack-sum')
class TemplateConfig(TmplSlotTableAnalysisConfig):
"""Configuration for TemplateTask"""
outsuffix = EOUtilOptions.clone_param('outsuffix', default='tmplsuffix')
bias = EOUtilOptions.clone_param('bias')
superbias = EOUtilOptions.clone_param('superbias')
mask = EOUtilOptions.clone_param('mask')
class SflatSummaryAnalysisConfig(AnalysisConfig):
"""Configurate for bias analyses"""
dataset = EOUtilOptions.clone_param('dataset')
class SflatRaftTableAnalysisConfig(AnalysisConfig):
"""Configuration for superflat analyses"""
infilekey = EOUtilOptions.clone_param('infilekey')
run = EOUtilOptions.clone_param('run')
raft = EOUtilOptions.clone_param('raft')
slots = EOUtilOptions.clone_param('slots')
class BiasVRowConfig(BiasAnalysisConfig):
"""Configuration for BiasVRowTask"""
filekey = EOUtilOptions.clone_param('filekey', default='biasval')
class Fe55RaftTableAnalysisConfig(AnalysisConfig):
"""Configuration for bias analyses"""
run = EOUtilOptions.clone_param('run')
raft = EOUtilOptions.clone_param('raft')
infilekey = EOUtilOptions.clone_param('infilekey')
class SuperbiasOutlierSummaryConfig(SuperbiasSummaryAnalysisConfig):
"""Configuration for SuperbiasOutlierSummaryTask"""
infilekey = EOUtilOptions.clone_param('infilekey', default='sbias')
filekey = EOUtilOptions.clone_param('filekey', default='sbias-sum')
class SuperbiasRaftConfig(SuperbiasRaftTableAnalysisConfig):
"""Configuration for SuperbiasRaftTask"""
filekey = EOUtilOptions.clone_param('filekey', default='sbias')
stats_hist = EOUtilOptions.clone_param('stats_hist')
mosaic = EOUtilOptions.clone_param('mosaic')
class QeAnalysisConfig(AnalysisConfig):
"""Configurate for bias analyses"""
run = EOUtilOptions.clone_param('run')
raft = EOUtilOptions.clone_param('raft')
slot = EOUtilOptions.clone_param('slot')
nfiles = EOUtilOptions.clone_param('nfiles')
class Fe55GainStatsConfig(Fe55RaftTableAnalysisConfig):
"""Configuration for Fe55GainStatsTask"""
infilekey = EOUtilOptions.clone_param('infilekey', default='fe55-clusters')
filekey = EOUtilOptions.clone_param('filekey', default='fe55-gain-stats')
use_all = EOUtilOptions.clone_param('use_all')
class Fe55GainSummaryConfig(Fe55SummaryAnalysisConfig):
"""Configuration for Fe55GainSummaryTask"""
infilekey = EOUtilOptions.clone_param('infilekey',
default='fe55-gain-stats')
filekey = EOUtilOptions.clone_param('filekey', default='fe55-gain-sum')
use_all = EOUtilOptions.clone_param('use_all')
class OscanAmpStackStatsConfig(BiasRaftTableAnalysisConfig):
"""Configuration for OscanAmpStackStatsTask"""
infilekey = EOUtilOptions.clone_param('infilekey', default='biasosstack')
filekey = EOUtilOptions.clone_param('filekey', default='biasosstack-stats')
class OscanAmpStackConfig(BiasAnalysisConfig):
"""Configuration for OscanAmpStackTask"""
filekey = EOUtilOptions.clone_param('filekey', default='biasosstack')