def test_runinfojson_norundone(self):
request = testing.DummyRequest()
job = self.fake_job()
job.db.runInfo.return_value = None
views = JobViews(job, request)
response = views.runinfojson()
self.assertEqual(
response, {
'success':
True,
'data':
dict(
ms_data_area='',
ms_data_format='mzxml',
ionisation_mode=1,
ms_intensity_cutoff=0.0,
msms_intensity_cutoff=5,
mz_precision=5.0,
mz_precision_abs=0.001,
abs_peak_cutoff=5000,
max_ms_level=10,
precursor_mz_precision=0.005,
max_broken_bonds=3,
max_water_losses=1,
)
})
def test_runinfojson(self):
request = testing.DummyRequest()
job = self.fake_job()
from magmaweb.models import Run
job.db.runInfo.return_value = Run(
ionisation_mode=-1,
skip_fragmentation=True,
ms_intensity_cutoff=200000.0,
msms_intensity_cutoff=50,
mz_precision=4.0,
mz_precision_abs=0.002,
use_all_peaks=True,
ms_filename='F123456.mzxml',
abs_peak_cutoff=1000,
max_ms_level=3,
precursor_mz_precision=0.01,
max_broken_bonds=4,
description='My first description',
max_water_losses=1,
)
views = JobViews(job, request)
response = views.runinfojson()
self.assertEqual(
response, {
'success':
True,
'data':
dict(
ms_data_area='',
ms_data_format='mzxml',
ionisation_mode=-1,
ms_intensity_cutoff=200000.0,
msms_intensity_cutoff=50,
mz_precision=4.0,
mz_precision_abs=0.002,
abs_peak_cutoff=1000,
max_ms_level=3,
precursor_mz_precision=0.01,
max_broken_bonds=4,
max_water_losses=1,
)
})
