sim_name = 'MSsim'
ISIs = [
-.2, -.1, -.05, -.03, -.02, -0.01, -0.005, 0.005, .01, .02, .03, .05, .1,
.2
]
from text_files import text_sim_1, text_sim_2, text_sim_3
fname_info = """
str diskpath="SimData/"@{Protocol}@"_"@{DA}@"_"@{Timing}@"_"@{Location}@"_Ca_ext_"@{external_Ca}
"""
locations = [
'tertdend1_2', 'tertdend1_1', 'tertdend1_3', 'tertdend1_4', 'tertdend1_5',
'tertdend1_6', 'tertdend1_8', 'tertdend1_10', 'tertdend1_11'
]
if __name__ == '__main__':
params = mp.read_file('SimParams.g')
gabaYesNo = 0 #mp.find_value(params,'GABAYesNo','Pre')
spines = mp.find_string(params, 'whichSpines', 'Pre')
stim_start = mp.find_value(params, 'initSim', 'Pre')
too_fast = mp.find_value(params, 'TooFast', 'Pre')
print(gabaYesNo, spines, stim_start, too_fast)
protocols = ['InOut/P_K.g']
timings = ['Pre', 'Post']
paradigm_names = ['P_and_K']
for location in locations:
for timing in timings:
for i, protocol in enumerate(protocols):
print(protocol)
text = mp.read_file(protocol)
#find pulseFreq
HookUp {prestim} {Protocol} {Timing} {stimcomp} {diskpath} {numAP} {inject} {AP_durtime} {APinterval} {ISI} {pulseFreq} {pulses} {burstFreq} {numbursts} {newTrainFreq} 1 {jitter_int}
reset
step 1.5 -time
fileFLUSH {Vmfile}
fileFLUSH {Cafile}
fileFLUSH {Gkfile}
fileFLUSH {spinefile}
fileFLUSH {somainjfile}
'''
if __name__ == '__main__':
for delay in [0.04]:
mp.change_in_file(synparams_file,'GABAdelay = ',delay)
params = mp.read_file('SimParams.g')
gabaYesNo = mp.find_value(params,'GABAYesNo','Pre')
spines = mp.find_string(params,'whichSpines','Pre')
stim_start = mp.find_value(params,'initSim','Pre')
too_fast = mp.find_value(params,'TooFast','Pre')
print gabaYesNo, spines, stim_start, too_fast
protocols = ['InOut/Fino.g']#,'InOut/1_AP.g']
timings = ['Pre','Post']
paradigm_names = ['Fino']#,'1_AP']
for timing in timings:
for i, protocol in enumerate(protocols):
text = mp.read_file(protocol)
#find pulseFreq
freq = mp.find_value(text, 'pulseFreq',timing)
npulses = mp.find_value(text, 'pulses',timing)
nbursts = mp.find_value(text, 'numbursts',timing)