def _createNewWorkflow(self, workflow_dir, pmr):
m = self._main_window.model().workflowManager()
om = self._main_window.model().optionsManager()
m.new(workflow_dir)
m.setPreviousLocation(workflow_dir)
if pmr:
pmr_info = PMR()
pmr_tool = PMRTool(pmr_info, use_external_git=om.getOption(USE_EXTERNAL_GIT))
if pmr_tool.hasAccess():
dir_name = os.path.basename(workflow_dir)
try:
repourl = pmr_tool.addWorkspace('Workflow: ' + dir_name, None)
pmr_tool.linkWorkspaceDirToUrl(workflow_dir, repourl)
except HTTPError as e:
logger.exception('Error creating new')
self.close()
raise ClientRuntimeError(
'Error Creating New', e)
else:
raise ClientRuntimeError('Error Creating New', "Client doesn't have access to PMR")
self._undoStack.clear()
self._ui.graphicsView.setLocation(workflow_dir)
self._graphicsScene.updateModel()
self._update_ui()
def _commitChanges(self, workflowDir, comment, commit_local=False):
committed_changes = False
om = self._main_window.model().optionsManager()
pmr_info = PMR()
pmr_tool = PMRTool(pmr_info, use_external_git=om.getOption(USE_EXTERNAL_GIT))
try:
workflow_files = [workflowDir + '/%s' % (DEFAULT_WORKFLOW_PROJECT_FILENAME),
workflowDir + '/%s' % (DEFAULT_WORKFLOW_ANNOTATION_FILENAME)]
for f in os.listdir(workflowDir):
if f.endswith(".conf"):
full_filename = os.path.join(workflowDir, f)
if full_filename not in workflow_files:
workflow_files.append(full_filename)
pmr_tool.commitFiles(workflowDir, comment, workflow_files)
# [workflowDir + '/%s' % (DEFAULT_WORKFLOW_PROJECT_FILENAME),
# workflowDir + '/%s' % (DEFAULT_WORKFLOW_ANNOTATION_FILENAME)]) # XXX make/use file tracker
if not commit_local:
pmr_tool.pushToRemote(workflowDir)
committed_changes = True
except ClientRuntimeError:
# handler will deal with this.
raise
except Exception:
logger.exception('Error')
raise ClientRuntimeError(
'Error Saving', 'The commit to PMR did not succeed')
return committed_changes
def addHost(self, host, active=False):
try:
# Look for duplicates
host_item = QtGui.QStandardItem(host)
same_items = self._model.findItems(host)
if len(same_items):
raise Exception('Host "{0}" already exists'.format(host))
if self._pmr_tool.isValidHost(host):
host_item.setCheckable(True)
host_item.setCheckState(
QtCore.Qt.Checked if active else QtCore.Qt.Unchecked)
self._model.appendRow(host_item)
except Exception as e:
raise ClientRuntimeError('Error Adding Host', str(e))
def test_client_runtime_error(self):
error = ClientRuntimeError('title', 'desc')
self.assertEqual(error.title, 'title')
self.assertEqual(error.description, 'desc')
def executeNext(self):
try:
self._main_window.execute()
except WorkflowError as e:
raise ClientRuntimeError('Error in workflow execution', str(e))