def plot_tda(data):
data = data.reshape((-1, 3))
plot_3d(data, fname='3d.png')
foo = em.ExploreMapper(data, slc.SingleLinkageClustering, ff.EccentricityP)
import sys, os
import params
import pathlib
sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '..')))
sys.path.insert(0, os.path.abspath(os.path.join(os.path.dirname(__file__), '../mapper')))
#sys.path.append('../mapper')
from mapper import em
from mapper import ff
from mapper import slc
from mapper.em_help import *
from em_3d_help import *
mkdir_p(params.PLOT_PATH)
data = read_3d_obj(fname="/Users/xiaosuhu/Documents/Python/mapper-tda/tests/lion_data.npy", fname_obj="/Users/xiaosuhu/Documents/Python/mapper-tda/tests/lion-reference.obj")
plot_3d(data, fname='3dTEST.png')
foo = em.ExploreMapper(data, slc.SingleLinkageClustering, ff.EccentricityP)
import numpy as np
import sys, os
import params
sys.path.insert(0,
os.path.abspath(os.path.join(os.path.dirname(__file__), '..')))
sys.path.insert(
0, os.path.abspath(os.path.join(os.path.dirname(__file__), '../mapper')))
from mapper import em
from mapper import ff
from mapper import slc
from mapper.em_help import *
from em_3d_help import *
mkdir_p(params.PLOT_PATH)
fname1 = "/Users/xiaosuhu/Documents/Python/mapper-tda/tests/spirals.npy"
data = np.load(fname1)
#data_reorg=np.column_stack((data[:,2], data[:,1], data[:,0]))
'''
fname2="/Users/xiaosuhu/Documents/Python/mapper-tda/tests/lion_data.npy"
datalion=np.load(fname2)
'''
plot_3d(data, fname='franktestsparial.png')
test = em.ExploreMapper(data, slc.NNC, ff.AxisProj)