def test_get_additional_gene_gtfs_land_in_df_genes(self, mock_download,
shared_prebuild):
g = EnsemblGenome("Ustilago_maydis", 33, shared_prebuild)
assert len(g.get_additional_gene_gtfs()) == 1
ppg.run_pipegraph()
print(g.df_genes.chr.unique())
assert "A2_pra2" in g.df_genes.index
assert "A2_pra2.1" in g.df_transcripts.index
def test_get_additional_gene_gtfs(self, mock_download, shared_prebuild):
g = EnsemblGenome("Ashbya_gossypii", 33, shared_prebuild)
assert len(g.get_additional_gene_gtfs()) == 0
g = EnsemblGenome("Homo_sapiens", 74, shared_prebuild)
assert "ribosomal_genes_grch37" in g.get_additional_gene_gtfs()[0].name
assert g.get_additional_gene_gtfs()[0].exists()
g = EnsemblGenome("Homo_sapiens", 75, shared_prebuild)
assert "ribosomal_genes_grch38" in g.get_additional_gene_gtfs()[0].name
assert g.get_additional_gene_gtfs()[0].exists()
g = EnsemblGenome("Mus_musculus", 68, shared_prebuild)
assert "ribosomal_genes_mm10" in g.get_additional_gene_gtfs()[0].name
assert g.get_additional_gene_gtfs()[0].exists()
g = EnsemblGenome("Mus_musculus", 67, shared_prebuild)
assert len(g.get_additional_gene_gtfs()) == 0