def _install(default_config):
mcmd.io.io.info("Looks like this is your first time running {}!\n "
"Let's take a moment to set things up. It's OK to leave some fields empty, you can always change "
"them later.".format(highlight("Molgenis Commander")))
mcmd.io.io.newline()
for configurer in property_configurers().values():
configurer(default_config)
config.set_config(default_config, context().get_properties_file())
mcmd.io.io.newline()
mcmd.io.io.info(
'The configuration file has been created at {}'.format(highlight(str(context().get_properties_file()))))
def _upgrade(default_config, user_config):
mcmd.io.io.info("Some properties haven't been configured yet. Let's take a moment to fix that.")
mcmd.io.io.newline()
for prop, configurer in property_configurers().items():
if prop not in user_config:
configurer(default_config)
config.set_config(default_config, context().get_properties_file())
mcmd.io.io.newline()
mcmd.io.io.info(
'The configuration file has been updated successfully ({})'.format(
highlight(str(context().get_properties_file()))))
exit(0)
def load_config():
yaml = YAML()
default_config = yaml.load(_DEFAULT_PROPERTIES)
if _is_install_required():
_install(default_config)
user_config = yaml.load(get_properties_file())
if _is_upgrade_required(user_config):
_upgrade(default_config, user_config)
# merge the configs so that new properties and list items are added
_merge(default_config, user_config)
# pass result to the config module and save to disk
config.set_config(default_config)
def load_config():
yaml = YAML()
default_config = _try_load_yaml(yaml, _DEFAULT_PROPERTIES)
if _is_install_required():
if os.getenv('MCMD_INSTALL_NON_INTERACTIVE', 'False').lower() == 'true':
_install_non_interactive(default_config)
else:
_install(default_config)
exit(0)
user_config = _try_load_yaml(yaml, context().get_properties_file())
if _is_upgrade_required(user_config):
_upgrade(default_config, user_config)
# merge the configs so that new properties and list items are added
_merge(default_config, user_config)
# pass result to the config module and save to disk
config.set_config(default_config, context().get_properties_file())
def _install_non_interactive(default_config):
config.set_config(default_config, context().get_properties_file())
config.set_non_interactive(True)
mcmd.io.io.info(
'The configuration file has been created at {}'.format(highlight(str(context().get_properties_file()))))