Beispiel #1
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def _stringToBuffer(datastring):
    """_stringToBuffer(datastring)  allocates a buffer, copies datastring into
    it, and returns the buffer.
    """
    abuff = memory.new_memory(len(datastring))
    memory.writeable_buffer(abuff)[:] = datastring
    return abuff
Beispiel #2
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def _stringToBuffer(datastring):
    """_stringToBuffer(datastring)  allocates a buffer, copies datastring into
    it, and returns the buffer.
    """
    abuff = memory.new_memory(len(datastring))
    memory.writeable_buffer(abuff)[:] = datastring
    return abuff
Beispiel #3
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 def _modify_buffer(self, offset, size):
     """_modify_buffer(self, offset, size) replaces the slice's mmap
     buffer with a resized RAM buffer, and copies the contents.
     """
     self._checkDeleted()
     self._dirty = 1
     olen = len(self)
     nlen = olen + size
     nm = memory.new_memory(nlen)
     nm[0:offset] = self._buffer[0:offset]
     if size > 0:
         nm[offset + size:] = self._buffer[offset:]
     else:
         nm[offset:] = self._buffer[offset - size:]
     self._buffer = nm
Beispiel #4
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 def _modify_buffer(self, offset, size):
     """_modify_buffer(self, offset, size) replaces the slice's mmap
     buffer with a resized RAM buffer, and copies the contents.
     """
     self._checkDeleted()
     self._dirty = 1
     olen = len(self)
     nlen = olen+size
     nm = memory.new_memory(nlen)
     nm[0:offset] = self._buffer[0:offset]
     if size > 0:
         nm[offset+size:] = self._buffer[offset:]
     else:
         nm[offset:] = self._buffer[offset-size:]
     self._buffer = nm
Beispiel #5
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 def copy(self):
     """Return a new array with the same shape and type, but a copy of the data"""
     arr = self.view()
     arr._data = memory.new_memory(arr._itemsize * arr.nelements())
     arr._byteoffset = 0
     arr._bytestride = arr._itemsize
     arr._strides = arr._stridesFromShape()
     arr._itemsize = self._itemsize
     # now copy data, if possible using larger units
     if product(self._shape):
         fname = "copy"+str(self._itemsize)+"bytes"
         copyfunction = ((self.isaligned() and
                          _bytes.functionDict.get(fname))
                         or _bytes.functionDict["copyNbytes"])
         copyfunction(arr._shape, self._data, self._byteoffset,
                      self._strides, arr._data, 0, arr._strides,
                      arr._itemsize)
     return arr
Beispiel #6
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    def resize(self, shape, *args):
        """ resize() shrinks/grows 'self' to new 'shape', possibly
        replacing the underlying buffer object.
        """
        shape = getShape(shape, *args)
        nlen = product(shape)
        if nlen < 0:
            raise ValueError("Negative shape dims don't work with resize")
        olen = self.nelements()

        if (isinstance(self._data, _types.BufferType) or
            isinstance(self._data, memory.MemoryType)):
            if self.iscontiguous():
                oself = self.view()
            else:
                oself = self.copy()
            self._data = memory.new_memory(nlen*self._itemsize)
            self._bytestride = self._itemsize
            self._byteoffset = 0
            blen = min(nlen, olen)
            self.ravel()
            oself.ravel()
            self[:blen] = oself[:blen]
        else: # Memmap
            self._data.resize(nlen*self._itemsize)

        self._shape = (nlen,)
        self._strides = self._stridesFromShape()

        if olen: # use any existing data as a pattern to be repeated
            if nlen > olen:
                offset = olen
                while offset+olen <= nlen:
                    self[offset:offset+olen] = self[0:olen]
                    offset += olen
                self[offset:nlen] = self[0:nlen-offset]
        else:   # zero fill resized zero-length numarray
            self[:] = 0

        self._shape = shape
        self._strides = self._stridesFromShape()
        return self
Beispiel #7
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        def __init__(self, shape=(), itemsize=1, buffer=None, byteoffset=0,
                     bytestride=None, byteorder=sys.byteorder, aligned=1):

            _ndarray.__init__(self);

            self._itemsize = itemsize
            self._byteoffset = byteoffset
            self._shape = getShape(shape)
            if bytestride is None:
                self._bytestride = itemsize
            elif bytestride < itemsize:
                raise ValueError('bytestride must be >= itemsize')
            else:
                self._bytestride = bytestride

            if buffer is not None:
                self._data = buffer
            else:
                size = self._bytestride * self.nelements()
                self._data = memory.new_memory(size)
            self._strides = self._stridesFromShape()
Beispiel #8
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    def copy(self):
        """Return a new array with the same shape and type, but a copy
        of the data

        >>> c = fromlist(["this","that", "another"])
        >>> d = c.copy()
        >>> d
        CharArray(['this', 'that', 'another'])
        >>> int(c._data is d._data)
        0
        """

        arr = self.view()
        arr._data = memory.new_memory(arr._itemsize * arr.nelements())
        arr._byteoffset = 0
        arr._bytestride = arr._itemsize
        arr._strides = arr._stridesFromShape()
        arr._itemsize = self._itemsize
        if _na.product(self._shape):
            copyfunction = _bytes.functionDict["copyNbytes"]
            copyfunction(
                arr._shape, self._data, self._byteoffset, self._strides, arr._data, 0, arr._strides, arr._itemsize
            )
        return arr
Beispiel #9
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    def copy(self):
        """Return a new array with the same shape and type, but a copy
        of the data

        >>> c = fromlist(["this","that", "another"])
        >>> d = c.copy()
        >>> d
        CharArray(['this', 'that', 'another'])
        >>> int(c._data is d._data)
        0
        """

        arr = self.view()
        arr._data = memory.new_memory(arr._itemsize * arr.nelements())
        arr._byteoffset = 0
        arr._bytestride = arr._itemsize
        arr._strides = arr._stridesFromShape()
        arr._itemsize = self._itemsize
        if _na.product(self._shape):
            copyfunction = _bytes.functionDict["copyNbytes"]
            copyfunction(arr._shape, self._data, self._byteoffset,
                         self._strides, arr._data, 0, arr._strides,
                         arr._itemsize)
        return arr
Beispiel #10
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    def insert(self, offset, size=None, buffer=None):
        """
        insert(self, offset, size) inserts a new slice of 'size'
        bytes, possibly between two adjacent slices, at byte 'offset'.
        It is not legal to insert into the middle of another slice, but
        pretty much everything else is legal.  The resulting
        MemmapSlice is returned.

        >>> m = open("memmap.tst",mode="w+",len=100)
        >>> n = m[0:50]
        >>> p = m[50:100]
        >>> q=m.insert(0, 200)
        >>> r=m.insert(50, 100)
        >>> s=m.insert(100, 300)
        >>> t=m.insert(45, 100)
        Traceback (most recent call last):
        ...
        IndexError: Slice overlaps prior slice of same file.
        >>> m.flush()
        >>> len(m)
        700
        >>> m.close()
        """
        self._chkIndex(offset, isSlice=1)
        self._chkOverlaps(offset, offset)
        if buffer is None:
            mem = memory.new_memory(size)
            mem = memory.writeable_buffer(mem)
        elif size is None or len(buffer) == size:
            mem = buffer
            size = len(buffer)
        else:
            raise ValueError("buffer and size don't match.")
        obj = MemmapSlice(mem, dirty=1)
        self._slices.append((offset, offset, obj))
        return obj
Beispiel #11
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    def insert(self, offset, size=None, buffer=None):
        """
        insert(self, offset, size) inserts a new slice of 'size'
        bytes, possibly between two adjacent slices, at byte 'offset'.
        It is not legal to insert into the middle of another slice, but
        pretty much everything else is legal.  The resulting
        MemmapSlice is returned.

        >>> m = open("memmap.tst",mode="w+",len=100)
        >>> n = m[0:50]
        >>> p = m[50:100]
        >>> q=m.insert(0, 200)
        >>> r=m.insert(50, 100)
        >>> s=m.insert(100, 300)
        >>> t=m.insert(45, 100)
        Traceback (most recent call last):
        ...
        IndexError: Slice overlaps prior slice of same file.
        >>> m.flush()
        >>> len(m)
        700
        >>> m.close()
        """
        self._chkIndex(offset, isSlice=1)
        self._chkOverlaps(offset, offset)
        if buffer is None:
            mem = memory.new_memory(size)
            mem = memory.writeable_buffer(mem)
        elif size is None or len(buffer) == size:
            mem = buffer
            size = len(buffer)
        else:
            raise ValueError("buffer and size don't match.")
        obj = MemmapSlice(mem, dirty=1)
        self._slices.append((offset, offset, obj))
        return obj
Beispiel #12
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def _stridesFromShape(shape):

    """_stridesFromShape() computes the strides which correspond to
    the specified shape."""

    if len(shape) > 1:
        head = [_gen.product(shape[1:])]
        tail = _stridesFromShape(shape[1:])
        head.extend(tail)
        return head
    else:
        return [1]


_dummyBuffer = _mem.new_memory(0)

if _PROTOTYPE:

    class _objarr(_gen.NDArray):
        def __init__(self, shape, objects=None):
            if objects is None:
                objects = [None] * _gen.product(shape)
            _gen.NDArray.__init__(self, shape=shape, buffer=_dummyBuffer, itemsize=1)
            self._objects = objects[:]

        def _getitem(self, offset):
            return self._objects[offset]

        def _setitem(self, offset, value):
            self._objects[offset] = value
Beispiel #13
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def _stridesFromShape(shape):
    """_stridesFromShape() computes the strides which correspond to
    the specified shape."""

    if len(shape) > 1:
        head = [_gen.product(shape[1:])]
        tail = _stridesFromShape(shape[1:])
        head.extend(tail)
        return head
    else:
        return [1]


_dummyBuffer = _mem.new_memory(0)

if _PROTOTYPE:

    class _objarr(_gen.NDArray):
        def __init__(self, shape, objects=None):
            if objects is None:
                objects = [None] * _gen.product(shape)
            _gen.NDArray.__init__(self,
                                  shape=shape,
                                  buffer=_dummyBuffer,
                                  itemsize=1)
            self._objects = objects[:]

        def _getitem(self, offset):
            return self._objects[offset]