def __init__(self, ma_unit, cur_txs, cur_group_str, conf_level=None, parent=None):
super(DiagnosticDataForm, self).__init__(parent)
self.setupUi(self)
if conf_level is None:
raise ValueError("Confidence level must be specified")
self.global_conf_level = conf_level
self.mult = meta_py_r.get_mult_from_r(self.global_conf_level)
self.setup_signals_and_slots()
# Assign stuff
self.ma_unit = ma_unit
self.cur_groups = cur_txs
self.group_str = cur_group_str
self.cur_effect = "Sens" # arbitrary
self.entry_widgets = [self.two_by_two_table, self.prevalence_txt_box,
self.low_txt_box, self.high_txt_box,
self.effect_txt_box,]
self.text_boxes = [self.low_txt_box, self.high_txt_box,
self.effect_txt_box, self.prevalence_txt_box]
self.ci_label.setText("{0:.1f}% Confidence Interval".format(self.global_conf_level))
self.initialize_form()
self.setup_inconsistency_checking()
self.undoStack = QUndoStack(self)
#self.setup_clear_button_palettes()
self._update_raw_data() # ma_unit -> table
self._populate_effect_cmbo_box() # make cmbo box entries for effects
self.set_current_effect() # fill in current effect data in line edits
self._update_data_table() # fill in the rest of the data table
self.enable_back_calculation_btn()
self.current_prevalence = self._get_prevalence_str()
def __init__(self, ma_unit, cur_txs, cur_group_str, cur_effect, conf_level=None, parent=None):
super(BinaryDataForm2, self).__init__(parent)
self.setupUi(self)
if conf_level is None:
raise ValueError("Confidence level must be specified")
self.global_conf_level = conf_level
self.mult=meta_py_r.get_mult_from_r(self.global_conf_level)
self._setup_signals_and_slots()
# Assign stuff
self.ma_unit = ma_unit
self.cur_groups = cur_txs
self.group_str = cur_group_str
self.cur_effect = cur_effect
self.entry_widgets = [self.raw_data_table, self.low_txt_box,
self.high_txt_box, self.effect_txt_box]
self.text_boxes = [self.low_txt_box, self.high_txt_box, self.effect_txt_box]
self.ci_label.setText("{0:.1f}% Confidence Interval".format(self.global_conf_level))
self.initialize_form() # initialize all cell to empty items
self.setup_inconsistency_checking()
self.undoStack = QUndoStack(self)
#self.setup_clear_button_palettes() # Color for clear_button_pallette
self._update_raw_data() # ma_unit --> table
self._populate_effect_data() # make combo boxes for effects
self.set_current_effect() # fill in current effect data in line edits
self._update_data_table() # fill in 2x2
self.enable_back_calculation_btn()
def __init__(self, ma_unit, cur_txs, cur_group_str, cur_effect, conf_level=None, parent=None):
super(ContinuousDataForm, self).__init__(parent)
self.setupUi(self)
self.setup_signals_and_slots()
if conf_level is None:
QMessageBox.critical(self, "insufficient arguments", "Confidence interval must be specified")
raise ValueError("Confidence interval must be specified")
self.conf_level = conf_level
self.mult = meta_py_r.get_mult_from_r(self.conf_level)
self.ma_unit = ma_unit
self.cur_groups = cur_txs
self.cur_effect = cur_effect
self.group_str = cur_group_str
self.metric_parameter = None
self.entry_widgets = [self.simple_table, self.g1_pre_post_table,
self.g2_pre_post_table, self.effect_txt_box,
self.low_txt_box, self.high_txt_box,
self.correlation_pre_post]
self.text_boxes = [self.low_txt_box, self.high_txt_box,
self.effect_txt_box, self.correlation_pre_post]
self.ci_label.setText("{0:.1f}% Confidence Interval".format(self.conf_level))
self.current_item_data = {}
# Set the table headers to reflect the group names
groups_names = QStringList(self.cur_groups)
self.simple_table.setVerticalHeaderLabels(groups_names)
self.tables = [self.simple_table, self.g1_pre_post_table, self.g2_pre_post_table]
for table in self.tables:
self._set_col_widths(table)
self.grp_1_lbl.setText(QString(self.cur_groups[0]))
self.grp_2_lbl.setText(QString(self.cur_groups[1]))
self.setup_clear_button_palettes() # Color for clear_button_pallette
self.initialize_form() # initialize cells to empty items
self.undoStack = QUndoStack(self)
self.update_raw_data()
self._populate_effect_data()
self.set_current_effect()
self.impute_data()
self.enable_back_calculation_btn()
print("current effect: %s" % str(self.cur_effect))
# Hide pre-post for SMD until it is implemented
if self.cur_effect not in ["MD","SMD"]:
self.grp_box_pre_post.setVisible(False)
self.adjustSize()
self.current_correlation = self._get_correlation_str()
def __init__(self,
ma_unit,
cur_txs,
cur_group_str,
cur_effect,
conf_level=None,
parent=None):
super(BinaryDataForm2, self).__init__(parent)
self.setupUi(self)
if conf_level is None:
raise ValueError("Confidence level must be specified")
self.global_conf_level = conf_level
self.mult = meta_py_r.get_mult_from_r(self.global_conf_level)
self._setup_signals_and_slots()
# Assign stuff
self.ma_unit = ma_unit
self.cur_groups = cur_txs
self.group_str = cur_group_str
self.cur_effect = cur_effect
self.entry_widgets = [
self.raw_data_table, self.low_txt_box, self.high_txt_box,
self.effect_txt_box
]
self.text_boxes = [
self.low_txt_box, self.high_txt_box, self.effect_txt_box
]
self.ci_label.setText("{0:.1f}% Confidence Interval".format(
self.global_conf_level))
self.initialize_form() # initialize all cell to empty items
self.setup_inconsistency_checking()
self.undoStack = QUndoStack(self)
#self.setup_clear_button_palettes() # Color for clear_button_pallette
self._update_raw_data() # ma_unit --> table
self._populate_effect_data() # make combo boxes for effects
self.set_current_effect() # fill in current effect data in line edits
self._update_data_table() # fill in 2x2
self.enable_back_calculation_btn()
def __init__(self,
ma_unit,
cur_txs,
cur_group_str,
cur_effect,
conf_level=None,
parent=None):
super(ContinuousDataForm, self).__init__(parent)
self.setupUi(self)
self.setup_signals_and_slots()
if conf_level is None:
QMessageBox.critical(self, "insufficient arguments",
"Confidence interval must be specified")
raise ValueError("Confidence interval must be specified")
self.conf_level = conf_level
self.mult = meta_py_r.get_mult_from_r(self.conf_level)
self.ma_unit = ma_unit
self.cur_groups = cur_txs
self.cur_effect = cur_effect
self.group_str = cur_group_str
self.metric_parameter = None
self.entry_widgets = [
self.simple_table, self.g1_pre_post_table, self.g2_pre_post_table,
self.effect_txt_box, self.low_txt_box, self.high_txt_box,
self.correlation_pre_post
]
self.text_boxes = [
self.low_txt_box, self.high_txt_box, self.effect_txt_box,
self.correlation_pre_post
]
self.ci_label.setText("{0:.1f}% Confidence Interval".format(
self.conf_level))
self.current_item_data = {}
# Set the table headers to reflect the group names
groups_names = QStringList(self.cur_groups)
self.simple_table.setVerticalHeaderLabels(groups_names)
self.tables = [
self.simple_table, self.g1_pre_post_table, self.g2_pre_post_table
]
for table in self.tables:
self._set_col_widths(table)
self.grp_1_lbl.setText(QString(self.cur_groups[0]))
self.grp_2_lbl.setText(QString(self.cur_groups[1]))
self.setup_clear_button_palettes() # Color for clear_button_pallette
self.initialize_form() # initialize cells to empty items
self.undoStack = QUndoStack(self)
self.update_raw_data()
self._populate_effect_data()
self.set_current_effect()
self.impute_data()
self.enable_back_calculation_btn()
print("current effect: %s" % str(self.cur_effect))
# Hide pre-post for SMD until it is implemented
if self.cur_effect not in ["MD", "SMD"]:
self.grp_box_pre_post.setVisible(False)
self.adjustSize()
self.current_correlation = self._get_correlation_str()
