def get_QWkappa(input):
head,body = fio.ReadMatrix(input, True)
metric = Metric()
data = {}
for i,row in enumerate(body):
for coder, label in enumerate(row):
if label == 'a': label = '0'
label = int(label)
if head[coder] not in data:
data[ head[coder] ] = []
data[ head[coder] ].append(label)
print 'annototor 1', '\t','annototor 2', '\t', 'accuracy', '\t', 'kappa', '\t', 'QWkappa'
print head[0], '\t', head[1], '\t', metric.accuracy(data[head[0]], data[head[1]]), '\t', metric.kappa(data[head[0]], data[head[1]]), '\t', metric.QWkappa(data[head[0]], data[head[1]])
print head[0], '\t', head[2], '\t', metric.accuracy(data[head[0]], data[head[2]]), '\t', metric.kappa(data[head[0]], data[head[2]]), '\t', metric.QWkappa(data[head[0]], data[head[2]])
print head[1], '\t', head[2], '\t', metric.accuracy(data[head[1]], data[head[2]]), '\t', metric.kappa(data[head[1]], data[head[2]]), '\t', metric.QWkappa(data[head[1]], data[head[2]])
print '', '\t', 'Average', '\t', np.mean([metric.accuracy(data[head[0]], data[head[1]]), metric.accuracy(data[head[0]], data[head[2]]), metric.accuracy(data[head[1]], data[head[2]])]), '\t',\
np.mean([metric.kappa(data[head[0]], data[head[1]]), metric.kappa(data[head[0]], data[head[2]]), metric.kappa(data[head[1]], data[head[2]])]), '\t',\
np.mean([metric.QWkappa(data[head[0]], data[head[1]]), metric.QWkappa(data[head[0]], data[head[2]]), metric.QWkappa(data[head[1]], data[head[2]])])
print metric.confusion_matrix(data[head[0]], data[head[1]])
return 0
def get_metrics_H1(datadir):
files = ['quality_WC_Unigram.label',
'quality_WC_Unigam_NonZero.label',
'quality_WC_Unigam_Content.label',
'quality_WC_Unigam_OrgAssign.label',
'quality_WC_Unigam_Speciteller.label',
'quality_WC_Unigam_Title.label',
'quality_DT.label',
'quality_New.label',
#'quality_New-Title.label',
'quality_firstnode.label'
]
metric = Metric()
body = []
for file in files:
labels, predicts, _ = load_label(datadir + file)
row = [file]
row.append(metric.accuracy(labels, predicts))
row.append(metric.kappa(labels, predicts))
row.append(metric.QWkappa(labels, predicts))
body.append(row)
output = datadir+'H1.txt'
print output
fio.WriteMatrix(output, body, header=None)
def get_metrics_H2c(datadir):
metric = Metric()
feature = 'quality_CrossCourse_Rubric_firstnode'
feature_fixed = 'quality_CrossCourse_Rubric_firstnode_fixed'
input = datadir + feature +'_test.label'
zero_file = datadir + feature +'_test_0.txt'
output = datadir + feature_fixed +'_test.label'
fix_firstnode(input, zero_file, output)
body = []
for feature in [
'quality_CrossCourse_WC_Unigram',
'quality_CrossCourse_Rubric',
'quality_CrossCourse_Rubric_firstnode_fixed',
'quality_CrossCourse_DT',
]:
file = feature+'_test.label'
print file
labels, predicts, _ = load_label(datadir + file)
row = [file]
row.append(metric.accuracy(labels, predicts))
row.append(metric.kappa(labels, predicts))
row.append(metric.QWkappa(labels, predicts))
body.append(row)
output = datadir+'H2c.txt'
print output
fio.WriteMatrix(output, body, header=None)
def get_metrics_H2b(datadir):
metric = Metric()
lectures = range(1, 9)
feature = 'quality_CrossTopic_Rubric_firstnode_'
feature_fixed = 'quality_CrossTopic_Rubric_firstnode_fixed_'
for fold in lectures:
input = datadir + feature + str(fold)+'_test.label'
zero_file = datadir + feature + str(fold)+'_test_0.txt'
output = datadir + feature_fixed + str(fold)+'_test.label'
fix_firstnode(input, zero_file, output)
body = []
for feature in [
'quality_CrossTopic_WC_Unigram_',
'quality_CrossTopic_Rubric_',
'quality_CrossTopic_Rubric_firstnode_fixed_',
'quality_CrossTopic_DT_',
]:
for lecture in lectures:
file = feature + str(lecture)+'_test.label'
print file
labels, predicts, _ = load_label(datadir + file)
row = [file]
row.append(metric.accuracy(labels, predicts))
row.append(metric.kappa(labels, predicts))
row.append(metric.QWkappa(labels, predicts))
body.append(row)
output = datadir+'H2b.txt'
print output
fio.WriteMatrix(output, body, header=None)
def evaluate(self):
test_featureset = self._get_featuresets(self.test_file)
labels = [int(x[1]) for x in test_featureset]
featureset = [x[0] for x in test_featureset]
predicts = [int(x) for x in self._model.classify_many(featureset)]
metric = Metric()
return metric.accuracy(labels, predicts), metric.kappa(labels, predicts), metric.QWkappa(labels, predicts)
def get_metrics_NewCourse(datadir):
files = ['DT.txt',
'DT_NoneZero.txt',
'Rubric.txt',
'Rubric_NoneZero.txt',
]
metric = Metric()
body = []
for file in files:
labels, predicts, _ = load_label(datadir + file)
row = [file]
row.append(metric.accuracy(labels, predicts))
row.append(metric.kappa(labels, predicts))
row.append(metric.QWkappa(labels, predicts))
body.append(row)
output = datadir+'H_NewCourse.txt'
print output
fio.WriteMatrix(output, body, header=None)
def get_metrics_H1_CV(datadir):
metric = Metric()
folds = range(0, 10)
#fix firstnode
feature = 'quality_rubric_firstnode_'
feature_fixed = 'quality_rubric_firstnode_fixed_'
for fold in folds:
input = datadir + feature + str(fold)+'_test.label'
zero_file = datadir + feature + str(fold)+'_test_0.txt'
output = datadir + feature_fixed + str(fold)+'_test.label'
fix_firstnode(input, zero_file, output)
body = []
for feature in ['quality_WC_Unigram_',
'quality_WC_Unigam_NonZero_',
'quality_WC_Unigam_Content_',
'quality_WC_Unigam_OrgAssign_',
'quality_WC_Unigam_Speciteller_',
'quality_WC_Unigam_Title_',
'quality_rubric_',
'quality_rubric_firstnode_fixed_',
'quality_DT_',
]:
for fold in folds:
file = feature + str(fold)+'_test.label'
print file
labels, predicts, _ = load_label(datadir + file)
row = [file]
row.append(metric.accuracy(labels, predicts))
row.append(metric.kappa(labels, predicts))
row.append(metric.QWkappa(labels, predicts))
body.append(row)
output = datadir+'H1_cv.txt'
print output
fio.WriteMatrix(output, body, header=None)
def get_metrics_H0(datadir):
metric = Metric()
body = []
for feature in ['quality_rubric', 'quality_binary_model', 'quality_New', 'quality_firstnode']:
file = feature+'.label'
print file
labels, predicts, _ = load_label(datadir + file)
fio.WriteMatrix(datadir + file + '.cm', metric.confusion_matrix(labels, predicts), None)
row = [file]
row.append(metric.accuracy(labels, predicts))
row.append(metric.kappa(labels, predicts))
row.append(metric.QWkappa(labels, predicts))
# row += metric.cv_accuracy(labels, predicts)
# row += metric.cv_kappa(labels, predicts)
# row += metric.cv_QWkappa(labels, predicts)
body.append(row)
output = datadir+'H0.txt'
print output
fio.WriteMatrix(output, body, header=None)
