def test_overlap(self):
self.assertEqual([(0, 5)], StringChunker._prune_overlaps([(0, 5)]))
self.assertEqual([], StringChunker._prune_overlaps([]))
self.assertEqual([(0, 5)],
StringChunker._prune_overlaps([(0, 5), (3, 6)]))
self.assertEqual([(0, 5), (5, 7)],
StringChunker._prune_overlaps([(0, 5), (5, 7),
(6, 8)]))
def test_chunker_invalid_checksum(self):
sample = bytearray(OPTAA_SAMPLE_DATA)
# change 1 byte, checksum should fail and no chunk should be generated
sample[20] = sample[20] + 1
chunker = StringChunker(Protocol.sieve_function)
ts = self.get_ntp_timestamp()
chunker.add_chunk(sample, ts)
(timestamp, result) = chunker.get_next_data()
self.assertEqual(timestamp, None)
self.assertEqual(result, None)
def test_chunker_invalid_checksum(self):
sample = bytearray(OPTAA_SAMPLE_DATA)
# change 1 byte, checksum should fail and no chunk should be generated
sample[20] = sample[20] + 1
chunker = StringChunker(Protocol.sieve_function)
ts = self.get_ntp_timestamp()
chunker.add_chunk(sample, ts)
(timestamp, result) = chunker.get_next_data()
self.assertEqual(timestamp, None)
self.assertEqual(result, None)
def test_funky_chunks(self):
def funky_sieve(data):
return [(3, 6), (0, 3)]
self._chunker = StringChunker(funky_sieve)
self._chunker.add_chunk("BarFoo", self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, "Bar")
self.assertEquals(time, self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, "Foo")
self.assertEquals(time, self.TIMESTAMP_1)
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(Protocol.sieve_function)
for sample in self._sample_chunks:
self.assert_chunker_sample(chunker, sample)
self.assert_chunker_fragmented_sample(chunker, sample)
self.assert_chunker_combined_sample(chunker, sample)
self.assert_chunker_sample_with_noise(chunker, sample)
# create a malformed sample
malformed = sample.replace('0', '4')
chunker.add_chunk(malformed, self.get_ntp_timestamp())
self.assert_chunker_sample(chunker, sample)
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(Protocol.sieve_function)
for sample in self._sample_chunks:
self.assert_chunker_sample(chunker, sample)
self.assert_chunker_fragmented_sample(chunker, sample)
self.assert_chunker_combined_sample(chunker, sample)
self.assert_chunker_sample_with_noise(chunker, sample)
# create a malformed sample
malformed = sample.replace('0', '4')
chunker.add_chunk(malformed, self.get_ntp_timestamp())
self.assert_chunker_sample(chunker, sample)
def test_regex_sieve(self):
"""
Do a test of the regex based sieve to make sure it does what we want.
"""
pattern = r'SATPAR(?P<sernum>\d{4}),(?P<timer>\d{1,7}.\d\d),(?P<counts>\d{10}),(?P<checksum>\d{1,3})'
regex = re.compile(pattern)
self._chunker = StringChunker(partial(self._chunker.regex_sieve_function, regex_list=[regex]))
self.assertEquals([(0,31)],
self._chunker.regex_sieve_function(self.SAMPLE_1, [regex]))
self.assertEquals([],
self._chunker.regex_sieve_function(self.FRAGMENT_1, [regex]))
self.assertEquals([(0,31), (33, 64)],
self._chunker.regex_sieve_function(self.MULTI_SAMPLE_1, [regex]))
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
CommandResponseInstrumentProtocol.__init__(self, prompts, newline,
driver_event)
self._protocol_fsm = InstrumentFSM(ProtocolState, ProtocolEvent,
ProtocolEvent.ENTER,
ProtocolEvent.EXIT)
handlers = {
ProtocolState.UNKNOWN:
[(ProtocolEvent.ENTER, self._handler_unknown_enter),
(ProtocolEvent.EXIT, self._handler_unknown_exit)],
}
for state in handlers:
for event, handler in handlers[state]:
self._protocol_fsm.add_handler(state, event, handler)
# State state machine in UNKNOWN state.
self._protocol_fsm.start(ProtocolState.UNKNOWN)
# create chunker for processing instrument samples.
self._chunker = StringChunker(self.sieve_function)
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
# Construct protocol superclass.
SamiProtocol.__init__(self, prompts, newline, driver_event)
## Continue building protocol state machine from SamiProtocol
self._protocol_fsm.add_handler(ProtocolState.SCHEDULED_SAMPLE,
ProtocolEvent.SUCCESS,
self._handler_sample_success)
self._protocol_fsm.add_handler(ProtocolState.SCHEDULED_SAMPLE,
ProtocolEvent.TIMEOUT,
self._handler_sample_timeout)
self._protocol_fsm.add_handler(ProtocolState.POLLED_SAMPLE,
ProtocolEvent.SUCCESS,
self._handler_sample_success)
self._protocol_fsm.add_handler(ProtocolState.POLLED_SAMPLE,
ProtocolEvent.TIMEOUT,
self._handler_sample_timeout)
# State state machine in UNKNOWN state.
self._protocol_fsm.start(ProtocolState.UNKNOWN)
# build the chunker bot
self._chunker = StringChunker(Protocol.sieve_function)
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
log.debug("IN WorkhorseProtocol.__init__")
# Construct protocol superclass.
TeledyneProtocol.__init__(self, prompts, newline, driver_event)
self._protocol_fsm.add_handler(WorkhorseProtocolState.COMMAND,
WorkhorseProtocolEvent.POWER_DOWN,
self._handler_command_power_down)
self._protocol_fsm.add_handler(
WorkhorseProtocolState.COMMAND,
WorkhorseProtocolEvent.RESTORE_FACTORY_PARAMS,
self._handler_command_restore_factory_params)
self._add_build_handler(WorkhorseInstrumentCmds.RESTORE_FACTORY_PARAMS,
self._build_simple_command)
self._add_response_handler(
WorkhorseInstrumentCmds.RESTORE_FACTORY_PARAMS,
self._parse_restore_factory_params_response)
self._chunker = StringChunker(WorkhorseProtocol.sieve_function)
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(Protocol.sieve_function)
self.assert_chunker_sample(chunker, VALID_SAMPLE_01)
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(CAMHDProtocol.sieve_function)
self.assert_chunker_sample(chunker, self.VALID_ADREAD_RESPONSE)
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
# Build protocol state machine.
self._protocol_fsm = ThreadSafeFSM(
ProtocolState, ProtocolEvent,
ProtocolEvent.ENTER, ProtocolEvent.EXIT)
# Construct protocol superclass.
Pco2wProtocol.__init__(self, prompts, newline, driver_event)
# Build protocol state machine.
self._protocol_fsm.add_handler(
ProtocolState.COMMAND, ProtocolEvent.RUN_EXTERNAL_PUMP,
self._handler_command_run_external_pump)
# this state would be entered whenever a RUN_EXTERNAL_PUMP event
# occurred while in the COMMAND state
self._protocol_fsm.add_handler(
ProtocolState.RUN_EXTERNAL_PUMP, ProtocolEvent.ENTER,
self._execution_state_enter)
self._protocol_fsm.add_handler(
ProtocolState.RUN_EXTERNAL_PUMP, ProtocolEvent.EXIT,
self._execution_state_exit)
self._protocol_fsm.add_handler(
ProtocolState.RUN_EXTERNAL_PUMP, ProtocolEvent.EXECUTE,
self._handler_run_external_pump_execute)
self._protocol_fsm.add_handler(
ProtocolState.RUN_EXTERNAL_PUMP, ProtocolEvent.SUCCESS,
self._execution_success_to_command_state)
self._protocol_fsm.add_handler(
ProtocolState.RUN_EXTERNAL_PUMP, ProtocolEvent.TIMEOUT,
self._execution_timeout_to_command_state)
## Events to queue - intended for schedulable events occurring when a sample is being taken
self._protocol_fsm.add_handler(
ProtocolState.RUN_EXTERNAL_PUMP, ProtocolEvent.ACQUIRE_STATUS,
self._handler_queue_acquire_status)
# Add build handlers for device commands.
### primarily defined in base class
self._add_build_handler(InstrumentCommand.PCO2WB_ACQUIRE_SAMPLE_DEV1, self._build_simple_command)
# Add response handlers for device commands.
### primarily defined in base class
self._add_response_handler(InstrumentCommand.PCO2WB_ACQUIRE_SAMPLE_DEV1, self._parse_response_sample_dev1)
# Add sample handlers
# Start state machine in UNKNOWN state.
self._protocol_fsm.start(ProtocolState.UNKNOWN)
# build the chunker
self._chunker = StringChunker(Protocol.sieve_function)
self._engineering_parameters.append(Parameter.EXTERNAL_PUMP_DELAY)
def __init__(self, config, stream_handle, state, sieve_fn, state_callback,
publish_callback):
"""
@param config The configuration parameters to feed into the parser
@param stream_handle An already open file-like filehandle
@param state The location in the file to start parsing from.
This reflects what has already been published.
@param sieve_fn A sieve function that might be added to a handler
to appropriate filter out the data
@param state_callback The callback method from the agent driver
(ultimately the agent) to call back when a state needs to be
updated
@param publish_callback The callback from the agent driver (and
ultimately from the agent) where we send our sample particle to
be published into ION
"""
self._chunker = StringChunker(sieve_fn)
self._stream_handle = stream_handle
self._state = state
self._state_callback = state_callback
self._publish_callback = publish_callback
self._config = config
self._new_sequence = True
#build class from module and class name, then set the state
self._particle_module = __import__(
config.get("particle_module"),
fromlist=[config.get("particle_class")])
self._particle_class = getattr(self._particle_module,
config.get("particle_class"))
def __init__(self, prompts, newline, driver_event, connections=None):
"""
Constructor.
@param prompts Enum class containing possible device prompts used for
command response logic.
@param newline The device newline.
@driver_event The callback for asynchronous driver events.
"""
if not type(connections) is list:
raise InstrumentProtocolException(
'Unable to instantiate multi connection protocol without connection list'
)
self._param_dict2 = ProtocolParameterDict()
# Construct superclass.
WorkhorseProtocol.__init__(self, prompts, newline, driver_event)
# Create multiple connection versions of the pieces of protocol involving data to/from the instrument
self._linebuf = {connection: '' for connection in connections}
self._promptbuf = {connection: '' for connection in connections}
self._last_data_timestamp = {
connection: None
for connection in connections
}
self.connections = {connection: None for connection in connections}
self.chunkers = {
connection: StringChunker(self.sieve_function)
for connection in connections
}
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(Protocol.sieve_function)
self.assert_chunker_sample(chunker, self.VALID_STATUS_MESSAGE)
self.assert_chunker_sample_with_noise(chunker, self.VALID_STATUS_MESSAGE)
self.assert_chunker_fragmented_sample(chunker, self.VALID_STATUS_MESSAGE)
self.assert_chunker_combined_sample(chunker, self.VALID_STATUS_MESSAGE)
self.assert_chunker_sample(chunker, self.VALID_CONTROL_RECORD)
self.assert_chunker_sample_with_noise(chunker, self.VALID_CONTROL_RECORD)
self.assert_chunker_fragmented_sample(chunker, self.VALID_CONTROL_RECORD)
self.assert_chunker_combined_sample(chunker, self.VALID_CONTROL_RECORD)
self.assert_chunker_sample(chunker, self.VALID_DATA_SAMPLE)
self.assert_chunker_sample_with_noise(chunker, self.VALID_DATA_SAMPLE)
self.assert_chunker_fragmented_sample(chunker, self.VALID_DATA_SAMPLE)
self.assert_chunker_combined_sample(chunker, self.VALID_DATA_SAMPLE)
self.assert_chunker_sample(chunker, self.VALID_CONFIG_STRING)
self.assert_chunker_sample_with_noise(chunker, self.VALID_CONFIG_STRING)
self.assert_chunker_fragmented_sample(chunker, self.VALID_CONFIG_STRING)
self.assert_chunker_combined_sample(chunker, self.VALID_CONFIG_STRING)
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(Protocol.sieve_function)
self.assert_chunker_sample(chunker, SAMPLE_GETSD)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_GETSD)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_GETSD, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_GETSD)
self.assert_chunker_sample(chunker, SAMPLE_GETCD)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_GETCD)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_GETCD, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_GETCD)
self.assert_chunker_sample(chunker, SAMPLE_GETEC)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_GETEC)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_GETEC, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_GETEC)
self.assert_chunker_sample(chunker, SAMPLE_GETHD)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_GETHD)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_GETHD, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_GETHD)
self.assert_chunker_sample(chunker, SAMPLE_SAMPLE)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_SAMPLE)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_SAMPLE, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_SAMPLE)
self.assert_chunker_sample(chunker, SAMPLE_REF_OSC)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_REF_OSC)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_REF_OSC, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_REF_OSC)
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(Protocol.sieve_function)
self.assert_chunker_sample(chunker, SAMPLE_MNU_RESPONSE)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_MNU_RESPONSE)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_MNU_RESPONSE, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_MNU_RESPONSE)
self.assert_chunker_sample(chunker, SAMPLE_RUN_RESPONSE)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_RUN_RESPONSE)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_RUN_RESPONSE, 1)
self.assert_chunker_combined_sample(chunker, SAMPLE_RUN_RESPONSE)
self.assert_chunker_sample(chunker, SAMPLE_MET_RESPONSE)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_MET_RESPONSE)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_MET_RESPONSE, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_MET_RESPONSE)
self.assert_chunker_sample(chunker, SAMPLE_SAMPLE_RESPONSE)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_SAMPLE_RESPONSE)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_SAMPLE_RESPONSE, 32)
self.assert_chunker_combined_sample(chunker, SAMPLE_SAMPLE_RESPONSE)
self.assert_chunker_sample(chunker, SAMPLE_DUMP_MEMORY_RESPONSE)
self.assert_chunker_sample_with_noise(chunker, SAMPLE_DUMP_MEMORY_RESPONSE)
self.assert_chunker_fragmented_sample(chunker, SAMPLE_DUMP_MEMORY_RESPONSE, 2)
self.assert_chunker_combined_sample(chunker, SAMPLE_DUMP_MEMORY_RESPONSE)
def test_chunker(self):
"""
Verify the chunker can parse each sample type
1. complete data structure
2. fragmented data structure
3. combined data structure
4. data structure with noise
"""
chunker = StringChunker(Protocol.sieve_function)
# test complete data structures
self.assert_chunker_sample(chunker, velocity_sample())
self.assert_chunker_sample(chunker, system_sample())
self.assert_chunker_sample(chunker, velocity_header_sample())
# test fragmented data structures
self.assert_chunker_fragmented_sample(chunker, velocity_sample())
self.assert_chunker_fragmented_sample(chunker, system_sample())
self.assert_chunker_fragmented_sample(chunker,
velocity_header_sample())
# test combined data structures
self.assert_chunker_combined_sample(chunker, velocity_sample())
self.assert_chunker_combined_sample(chunker, system_sample())
self.assert_chunker_combined_sample(chunker, velocity_header_sample())
# test data structures with noise
self.assert_chunker_sample_with_noise(chunker, velocity_sample())
self.assert_chunker_sample_with_noise(chunker, system_sample())
self.assert_chunker_sample_with_noise(chunker,
velocity_header_sample())
def __init__(self,
config,
stream_handle,
state,
sieve_fn,
state_callback,
publish_callback,
exception_callback=None):
"""
@param config The configuration parameters to feed into the parser
@param stream_handle An already open file-like filehandle
@param state The location in the file to start parsing from.
This reflects what has already been published.
@param sieve_fn A sieve function that might be added to a handler
to appropriate filter out the data
@param state_callback The callback method from the agent driver
(ultimately the agent) to call back when a state needs to be
updated
@param publish_callback The callback from the agent driver (and
ultimately from the agent) where we send our sample particle to
be published into ION
@param exception_callback The callback from the agent driver (and
ultimately from the agent) where we send our error events to
be published into ION
"""
self._chunker = StringChunker(sieve_fn)
self._stream_handle = stream_handle
self._state = state
self._state_callback = state_callback
self._publish_callback = publish_callback
self._exception_callback = exception_callback
self._config = config
# It was originally thought that we wanted to start a new sequence for every new file
# But that has changed. If we want this behavior back then we need to change
# this back to true
self._new_sequence = False
# Build class from module and class name, then set the state
if config.get(DataSetDriverConfigKeys.PARTICLE_CLASS) is not None:
if config.get(DataSetDriverConfigKeys.PARTICLE_MODULE):
self._particle_module = __import__(
config.get(DataSetDriverConfigKeys.PARTICLE_MODULE),
fromlist=[
config.get(DataSetDriverConfigKeys.PARTICLE_CLASS)
])
# if there is more than one particle class for this parser, this cannot be used, need to hard code the
# particle class in the driver
try:
self._particle_class = getattr(
self._particle_module,
config.get(DataSetDriverConfigKeys.PARTICLE_CLASS))
except TypeError:
self._particle_class = None
else:
log.warn(
"Particle class is specified in config, but no particle module is specified in config"
)
def test_funky_chunks(self):
def funky_sieve(data):
return [(3,6),(0,3)]
self._chunker = StringChunker(funky_sieve)
self._chunker.add_chunk("BarFoo")
result = self._chunker.get_next_data()
self.assertEquals(result, "Bar")
result = self._chunker.get_next_data()
self.assertEquals(result, "Foo")
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(Protocol.sieve_function)
self.assert_chunker_sample(chunker, self.SAMPLE_DATA1)
self.assert_chunker_sample_with_noise(chunker, self.SAMPLE_DATA1)
self.assert_chunker_fragmented_sample(chunker, self.SAMPLE_DATA1)
self.assert_chunker_combined_sample(chunker, self.SAMPLE_DATA1)
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
# Construct protocol superclass.
CommandResponseInstrumentProtocol.__init__(self, prompts, newline, driver_event)
# Build protocol state machine.
self._protocol_fsm = InstrumentFSM(ProtocolState, ProtocolEvent,
ProtocolEvent.ENTER, ProtocolEvent.EXIT)
# Add event handlers for protocol state machine.
self._protocol_fsm.add_handler(ProtocolState.UNKNOWN, ProtocolEvent.ENTER, self._handler_unknown_enter)
self._protocol_fsm.add_handler(ProtocolState.UNKNOWN, ProtocolEvent.EXIT, self._handler_unknown_exit)
self._protocol_fsm.add_handler(ProtocolState.UNKNOWN, ProtocolEvent.DISCOVER, self._handler_unknown_discover)
self._protocol_fsm.add_handler(ProtocolState.AUTOSAMPLE, ProtocolEvent.ENTER, self._handler_autosample_enter)
self._protocol_fsm.add_handler(ProtocolState.AUTOSAMPLE, ProtocolEvent.EXIT, self._handler_autosample_exit)
self._protocol_fsm.add_handler(ProtocolState.AUTOSAMPLE, ProtocolEvent.STOP_AUTOSAMPLE, self._handler_autosample_stop_autosample)
self._protocol_fsm.add_handler(ProtocolState.COMMAND, ProtocolEvent.ENTER, self._handler_command_enter)
self._protocol_fsm.add_handler(ProtocolState.COMMAND, ProtocolEvent.EXIT, self._handler_command_exit)
self._protocol_fsm.add_handler(ProtocolState.COMMAND, ProtocolEvent.GET, self._handler_command_get)
self._protocol_fsm.add_handler(ProtocolState.COMMAND, ProtocolEvent.SET, self._handler_command_set)
self._protocol_fsm.add_handler(ProtocolState.COMMAND, ProtocolEvent.START_AUTOSAMPLE, self._handler_command_start_autosample)
self._protocol_fsm.add_handler(ProtocolState.COMMAND, ProtocolEvent.HEAT_ON, self._handler_command_heat_on)
self._protocol_fsm.add_handler(ProtocolState.COMMAND, ProtocolEvent.HEAT_OFF, self._handler_command_heat_off)
# Construct the parameter dictionary containing device parameters,
# current parameter values, and set formatting functions.
self._build_param_dict()
# Add build handlers for device commands.
self._add_build_handler(InstrumentCommand.HEAT_ON, self._build_heat_on_command)
self._add_build_handler(InstrumentCommand.HEAT_OFF, self._build_heat_off_command)
# Add response handlers for device commands.
self._add_response_handler(InstrumentCommand.HEAT_ON, self._parse_heat_on_off_resp)
self._add_response_handler(InstrumentCommand.HEAT_OFF, self._parse_heat_on_off_resp)
# Add sample handlers.
# State state machine in UNKNOWN state.
self._protocol_fsm.start(ProtocolState.UNKNOWN)
# commands sent sent to device to be filtered in responses for telnet DA
self._sent_cmds = []
#
self._chunker = StringChunker(Protocol.sieve_function)
self._heat_duration = DEFAULT_HEAT_DURATION
def __init__(self, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
CommandResponseInstrumentProtocol.__init__(self, None, None, driver_event)
# create chunker for processing instrument samples.
self._chunker = StringChunker(self.sieve_function)
def test_chunker(self):
"""
Tests the chunker
"""
# This will want to be created in the driver eventually...
chunker = StringChunker(Protocol.sieve_function)
self.assert_chunker_sample(chunker, FULL_SAMPLE)
self.assert_chunker_fragmented_sample(chunker, FULL_SAMPLE)
self.assert_chunker_combined_sample(chunker, FULL_SAMPLE)
self.assert_chunker_sample_with_noise(chunker, FULL_SAMPLE)
def test_chunker(self):
"""
Tests the chunker
"""
# This will want to be created in the driver eventually...
chunker = StringChunker(SatlanticOCR507InstrumentProtocol.sieve_function)
for sample in [ VALID_SAMPLE_INVALID_CHECKSUM, VALID_SAMPLE_VALID_CHECKSUM, VALID_CONFIG ]:
self.assert_chunker_sample(chunker, sample)
self.assert_chunker_fragmented_sample(chunker, sample)
self.assert_chunker_combined_sample(chunker, sample)
self.assert_chunker_sample_with_noise(chunker, sample)
def test_funky_chunks(self):
def funky_sieve(_):
return [(3,6),(0,3)]
self._chunker = StringChunker(funky_sieve)
self._chunker.add_chunk("BarFoo", self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, "Bar")
self.assertEquals(time, self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, "Foo")
self.assertEquals(time, self.TIMESTAMP_1)
def test_regex_sieve(self):
"""
Do a test of the regex based sieve to make sure it does what we want.
"""
pattern = r"SATPAR(?P<sernum>\d{4}),(?P<timer>\d{1,7}.\d\d),(?P<counts>\d{10}),(?P<checksum>\d{1,3})"
regex = re.compile(pattern)
self._chunker = StringChunker(partial(self._chunker.regex_sieve_function, regex_list=[regex]))
self.assertEquals([(0, 31)], self._chunker.regex_sieve_function(self.SAMPLE_1, [regex]))
self.assertEquals([], self._chunker.regex_sieve_function(self.FRAGMENT_1, [regex]))
self.assertEquals([(0, 31), (33, 64)], self._chunker.regex_sieve_function(self.MULTI_SAMPLE_1, [regex]))
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
# Construct protocol superclass.
TeledyneProtocol.__init__(self, prompts, newline, driver_event)
self._chunker = StringChunker(WorkhorseProtocol.sieve_function)
def test_chunker(self):
"""
Test the chunker
"""
chunker = StringChunker(Protocol.sieve_function)
chunks = [TELEGRAM_1]
for chunk in chunks:
self.assert_chunker_sample(chunker, chunk + NEWLINE)
self.assert_chunker_fragmented_sample(chunker, chunk + NEWLINE)
self.assert_chunker_sample_with_noise(chunker, chunk + NEWLINE)
self.assert_chunker_combined_sample(chunker, chunk + NEWLINE)
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
# Construct protocol superclass.
SamiProtocol.__init__(self, prompts, newline, driver_event)
# Build protocol state machine.
###
# most of these are defined in the base class with exception of handlers
# defined below that differ for the two instruments (what defines
# success and the timeout duration)
###
# this state would be entered whenever an ACQUIRE_SAMPLE event occurred
# while in the AUTOSAMPLE state and will last anywhere from a few
# seconds to ~12 minutes depending on instrument and the type of
# sampling.
self._protocol_fsm.add_handler(ProtocolState.SCHEDULED_SAMPLE, ProtocolEvent.SUCCESS,
self._handler_sample_success)
self._protocol_fsm.add_handler(ProtocolState.SCHEDULED_SAMPLE, ProtocolEvent.TIMEOUT,
self._handler_sample_timeout)
# this state would be entered whenever an ACQUIRE_SAMPLE event occurred
# while in either the COMMAND state (or via the discover transition
# from the UNKNOWN state with the instrument unresponsive) and will
# last anywhere from a few seconds to 3 minutes depending on instrument
# and sample type.
self._protocol_fsm.add_handler(ProtocolState.POLLED_SAMPLE, ProtocolEvent.SUCCESS,
self._handler_sample_success)
self._protocol_fsm.add_handler(ProtocolState.POLLED_SAMPLE, ProtocolEvent.TIMEOUT,
self._handler_sample_timeout)
# Add build handlers for device commands.
### primarily defined in base class
self._add_build_handler(InstrumentCommand.ACQUIRE_SAMPLE_DEV1, self._build_sample_dev1)
# Add response handlers for device commands.
### primarily defined in base class
self._add_response_handler(InstrumentCommand.ACQUIRE_SAMPLE_DEV1, self._build_response_sample_dev1)
# Add sample handlers
# State state machine in UNKNOWN state.
self._protocol_fsm.start(ProtocolState.UNKNOWN)
# build the chunker
self._chunker = StringChunker(Protocol.sieve_function)
def test_chunker(self):
"""
Verify the chunker can parse each sample type
1. complete data structure
2. fragmented data structure
3. combined data structure
4. data structure with noise
"""
chunker = StringChunker(Protocol.sieve_function)
self.assert_chunker_sample(chunker, VELOCITY_SAMPLE)
self.assert_chunker_fragmented_sample(chunker, VELOCITY_SAMPLE)
self.assert_chunker_combined_sample(chunker, VELOCITY_SAMPLE)
self.assert_chunker_sample_with_noise(chunker, VELOCITY_SAMPLE)
def test_overlap(self):
self.assertFalse(StringChunker.overlaps([(0, 5)]))
self.assertFalse(StringChunker.overlaps([]))
self.assertTrue(StringChunker.overlaps([(0, 5), (3, 6)]))
self.assertTrue(StringChunker.overlaps([(0, 5), (5, 7), (6, 8)]))
self.assertTrue(StringChunker.overlaps([(0, 5), (6, 9), (5, 7)]))
def overlap_sieve(data):
return [(0, 3), (2, 6)]
self._chunker = StringChunker(overlap_sieve)
self.assertRaises(SampleException, self._chunker.add_chunk, "foobar",
self.TIMESTAMP_1)
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(CAMDSProtocol.sieve_function)
self.assert_chunker_sample(chunker, self._health_data)
self.assert_chunker_sample_with_noise(chunker, self._health_data)
self.assert_chunker_fragmented_sample(chunker, self._health_data, 5)
self.assert_chunker_combined_sample(chunker, self._health_data)
self.assert_chunker_sample(chunker, self._disk_data)
self.assert_chunker_sample_with_noise(chunker, self._disk_data)
self.assert_chunker_fragmented_sample(chunker, self._disk_data, 6)
self.assert_chunker_combined_sample(chunker, self._disk_data)
def test_chunker(self):
"""
Test the chunker and verify the particles created.
"""
chunker = StringChunker(Protocol.sieve_function)
self.assert_chunker_sample(chunker, self.VALID_CTDBP_NO_SAMPLE)
self.assert_chunker_sample_with_noise(chunker, self.VALID_CTDBP_NO_SAMPLE)
self.assert_chunker_fragmented_sample(chunker, self.VALID_CTDBP_NO_SAMPLE)
self.assert_chunker_combined_sample(chunker, self.VALID_CTDBP_NO_SAMPLE)
self.assert_chunker_sample(chunker, self.VALID_CTDPF_SBE43_SAMPLE)
self.assert_chunker_sample_with_noise(chunker, self.VALID_CTDPF_SBE43_SAMPLE)
self.assert_chunker_fragmented_sample(chunker, self.VALID_CTDPF_SBE43_SAMPLE)
self.assert_chunker_combined_sample(chunker, self.VALID_CTDPF_SBE43_SAMPLE)
def test_overlap(self):
self.assertFalse(StringChunker.overlaps([(0, 5)]))
self.assertFalse(StringChunker.overlaps([]))
self.assertTrue(StringChunker.overlaps([(0, 5), (3, 6)]))
self.assertTrue(StringChunker.overlaps([(0, 5), (5, 7), (6, 8)]))
self.assertTrue(StringChunker.overlaps([(0, 5), (6, 9), (5, 7)]))
def overlap_sieve(data):
return [(0,3),(2,6)]
self._chunker = StringChunker(overlap_sieve)
self.assertRaises(SampleException, self._chunker.add_chunk, "foobar")
def setUp(self):
""" Setup a chunker for use in tests """
self._chunker = StringChunker(UnitTestStringChunker.sieve_function)
class Protocol(CommandResponseInstrumentProtocol):
"""
Instrument protocol class
Subclasses CommandResponseInstrumentProtocol
"""
__metaclass__ = META_LOGGER
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
# Construct protocol superclass.
CommandResponseInstrumentProtocol.__init__(self, prompts, newline, driver_event)
# Build protocol state machine.
self._protocol_fsm = ThreadSafeFSM(ProtocolState, ProtocolEvent,
ProtocolEvent.ENTER, ProtocolEvent.EXIT)
# Add event handlers for protocol state machine.
handlers = {
ProtocolState.UNKNOWN: [
(ProtocolEvent.ENTER, self._handler_generic_enter),
(ProtocolEvent.EXIT, self._handler_generic_exit),
(ProtocolEvent.DISCOVER, self._handler_unknown_discover),
],
ProtocolState.COMMAND: [
(ProtocolEvent.ENTER, self._handler_generic_enter),
(ProtocolEvent.EXIT, self._handler_generic_exit),
(ProtocolEvent.START_DIRECT, self._handler_command_start_direct),
(ProtocolEvent.GET, self._handler_command_get),
(ProtocolEvent.SET, self._handler_command_set),
(ProtocolEvent.START_SCAN, self._handler_command_start_scan),
],
ProtocolState.DIRECT_ACCESS: [
(ProtocolEvent.ENTER, self._handler_direct_access_enter),
(ProtocolEvent.EXIT, self._handler_generic_exit),
(ProtocolEvent.STOP_DIRECT, self._handler_direct_access_stop_direct),
(ProtocolEvent.EXECUTE_DIRECT, self._handler_direct_access_execute_direct),
],
ProtocolState.SCAN: [
(ProtocolEvent.ENTER, self._handler_scan_enter),
(ProtocolEvent.EXIT, self._handler_scan_exit),
(ProtocolEvent.STOP_SCAN, self._handler_scan_stop_scan),
(ProtocolEvent.TAKE_SCAN, self._handler_scan_take_scan),
(ProtocolEvent.TIMEOUT, self._handler_scan_timeout),
(ProtocolEvent.ERROR, self._handler_scan_error),
],
ProtocolState.ERROR: [
(ProtocolEvent.ENTER, self._handler_generic_enter),
(ProtocolEvent.EXIT, self._handler_generic_exit),
(ProtocolEvent.CLEAR, self._handler_error_clear),
(ProtocolEvent.GET, self._handler_command_get),
]
}
for state in handlers:
for event, handler in handlers[state]:
self._protocol_fsm.add_handler(state, event, handler)
# Construct the parameter dictionary containing device parameters,
# current parameter values, and set formatting functions.
self._build_param_dict()
self._build_command_dict()
self._build_driver_dict()
# Add build handlers for device commands.
for command in InstrumentCommand.list():
self._add_build_handler(command, self._generic_build_handler)
# Add response handlers for device commands.
for command in InstrumentCommand.list():
self._add_response_handler(command, functools.partial(self._generic_response_handler, command=command))
# State state machine in UNKNOWN state.
self._protocol_fsm.start(ProtocolState.UNKNOWN)
# commands sent sent to device to be filtered in responses for telnet DA
self._sent_cmds = []
self._chunker = StringChunker(Protocol.sieve_function)
self.initialize_scheduler()
# all calls to do_cmd_resp should expect RESPONSE_REGEX and use TIMEOUT. Freeze these arguments...
self._do_cmd_resp = functools.partial(self._do_cmd_resp, response_regex=RESPONSE_REGEX, timeout=TIMEOUT)
# these variables are used to track scan time and completion status
# for development and performance data
self.scan_start_time = 0
self.in_scan = False
@staticmethod
def sieve_function(raw_data):
"""
This is a placeholder. The sieve function for the RGA is built dynamically when a scan is started.
This function must return a list.
see self._build_sieve_function()
"""
return []
def _build_param_dict(self):
"""
Populate the parameter dictionary with parameters.
For each parameter key, add match string, match lambda function,
and value formatting function for set commands.
"""
name = 'display_name'
desc = 'description'
units = 'units'
val_desc = 'value_description'
parameters = {
Parameter.ID: {
name: 'RGA ID String',
desc: '',
},
Parameter.EE: {
name: 'Electron Energy',
desc: 'The desired electron ionization energy: (25 - 105)',
units: DriverUnits.ELECTRONVOLT,
val_desc: 'The desired electron ionization energy in units of eV'
},
Parameter.IE: {
name: 'Ion Energy',
desc: 'The ion energy: (0:8eV | 1:12eV)',
val_desc: 'Ion energy level: 0 for Low and 1 for High',
},
Parameter.VF: {
name: 'Focus Plate Voltage',
desc: 'The focus plate voltage in the ionizer: (0 - 150)',
val_desc: 'The parameter represents the magnitude of the biasing voltage (negative) in units of volts.',
units: DriverUnits.VOLT,
},
Parameter.NF: {
name: 'Noise Floor',
desc: 'Rate and detection limit for ion current measurements: (0 - 7)',
val_desc: 'The parameter represents the noise-floor level desired. Lower parameter values ' +
'correspond to lower baseline noise, better detection limits and increased measurement ' +
'times. Please refer to the Electrometer section of the RGA Electronics Control Unit ' +
'chapter to obtain detailed information about detection limits and bandwidth values' +
'as a function of NF settings.',
},
Parameter.SA: {
name: 'Steps per AMU',
desc: 'Number of steps executed per amu of analog scan: (10 - 25)',
val_desc: 'The parameter specifies the number of steps-per-amu.',
units: DriverUnits.COUNTS,
},
Parameter.MI: {
name: 'Initial Mass',
desc: 'The initial scan mass: (1 - 200)',
units: DriverUnits.AMU,
},
Parameter.MF: {
name: 'Final Mass',
desc: 'The final scan mass: (1 - 200)',
units: DriverUnits.AMU,
},
Parameter.FL: {
name: 'Electron Emission Current',
desc: 'Electron emission current level in the ionizer: (0 - 3.5)',
val_desc: 'The parameter represents the desired electron emission current.',
units: Prefixes.MILLI + Units.AMPERE
},
Parameter.FL_ACTUAL: {
name: 'Actual Electron Emission Current',
desc: 'The actual electron emission current level in the ionizer.',
val_desc: 'The parameter represents the actual electron emission current.',
units: Prefixes.MILLI + Units.AMPERE
},
Parameter.AP: {
name: 'Analog Scan Points',
desc: 'The total number of ion currents that will be measured and transmitted ' +
'during an analog scan under the current scan conditions.',
val_desc: 'Total number of ion currents to be transmitted. Does not include the four extra' +
'bytes for total pressure included when performing an analog scan.',
units: DriverUnits.COUNTS
},
Parameter.HV: {
name: 'High Voltage CDEM',
desc: 'Electron multiplier high voltage bias setting: (0:disables CDEM, 10 - 2490)',
val_desc: '0 disables the CDEM, values from 10-2490 enable the CDEM and specify the CDEM bias voltage',
units: Units.VOLT
},
Parameter.ER: {
name: 'Status Byte',
desc: 'Bit-mapped value representing any errors detected by the RGA.',
val_desc: '0 indicates no errors detected. See the RGA manual if this value is non-zero.',
},
Parameter.ERROR_REASON: {
name: 'RGA Error Reason',
desc: 'Reason for RGA error state.'
}
}
constraints = ParameterConstraints.dict()
read_only = [Parameter.ID, Parameter.AP, Parameter.ER, Parameter.FL_ACTUAL, Parameter.ERROR_REASON]
floats = [Parameter.FL, Parameter.FL_ACTUAL]
strings = [Parameter.ID, Parameter.ERROR_REASON]
for param in parameters:
visibility = ParameterDictVisibility.READ_WRITE
value_type = ParameterDictType.INT
formatter = int
startup = True
if param in read_only:
visibility = ParameterDictVisibility.READ_ONLY
startup = False
if param in floats:
value_type = ParameterDictType.FLOAT
formatter = float
elif param in strings:
value_type = ParameterDictType.STRING
formatter = str
if param in constraints:
_type, minimum, maximum = constraints[param]
parameters[param][val_desc] = '%s %s value from %d - %d' % (parameters[param].get(val_desc, ''),
_type, minimum, maximum)
self._param_dict.add(param, '', None, formatter, type=value_type,
visibility=visibility, startup_param=startup, **parameters[param])
def _build_command_dict(self):
"""
Populate the command dictionary with commands.
"""
self._cmd_dict.add(Capability.START_SCAN, display_name="Start Scan")
self._cmd_dict.add(Capability.STOP_SCAN, display_name="Stop Scan")
self._cmd_dict.add(Capability.CLEAR, display_name="Clear Error State")
self._cmd_dict.add(Capability.DISCOVER, display_name='Discover')
def _build_driver_dict(self):
"""
Populate the driver dictionary with options
"""
self._driver_dict.add(DriverDictKey.VENDOR_SW_COMPATIBLE, False)
def _got_chunk(self, chunk, ts):
"""
The base class got_data has gotten a chunk from the chunker.
We only generate sample particles and they cannot be verified (beyond size, which is done in the chunker).
Just create a particle, reset the scheduler and start the next scan.
@param chunk: data to process
@param ts: timestamp
"""
elapsed = time.time() - self.scan_start_time
self.in_scan = False
log.debug('_got_chunk: Received complete scan. AP: %d NF: %d SIZE: %d ET: %d secs',
self._param_dict.get(Parameter.AP),
self._param_dict.get(Parameter.NF),
len(chunk),
elapsed)
self._driver_event(DriverAsyncEvent.SAMPLE, RGASampleParticle(chunk, port_timestamp=ts).generate())
# Reset the scheduler and initiate the next scan if we are in the scan state
if self.get_current_state() == ProtocolState.SCAN:
self._build_scheduler()
self._async_raise_fsm_event(ProtocolEvent.TAKE_SCAN)
def _generic_response_handler(self, resp, prompt, command=None):
"""
Generic response handler. Shove the results into the param dict.
The associated command should be frozen when the response handler is registered using functools.partial
@param resp: command response
@param prompt: not used, required to match signature
@param command: command which generated response
@return: response
"""
parameter = getattr(Parameter, command, None)
log.debug('_generic_response_handler: command: %s parameter: %s resp: %s', command, parameter, resp)
if parameter in self._param_dict.get_keys():
if parameter == Parameter.FL:
parameter = Parameter.FL_ACTUAL
try:
self._param_dict.set_value(parameter, self._param_dict.format(parameter, resp))
except ValueError:
# bad data? Don't set the value, but keep the driver moving forward
# verify the data if necessary downstream.
pass
return resp
def _generic_build_handler(self, command, *args, **kwargs):
"""
Generic build handler. If a value is passed, then this is a set, otherwise it's a query...
@param command: command to build
@param args: arglist which may contain a value
@return: command string
"""
if len(args) == 1:
# this is a set action
value = args[0]
return self._build_rga_set(command, value) + NEWLINE
# this is a query
return self._build_rga_query(command) + NEWLINE
def _build_rga_set(self, command, value):
"""
Build a set command
@param command: command to build
@param value: value to set
@return: command string
"""
return command + str(value)
def _build_rga_query(self, command):
"""
Build a query command
@param command: command to build
@return: command string
"""
return command + '?'
def _filter_capabilities(self, events):
"""
Return a list of currently available capabilities.
@param events: list of events to be filtered
@return: list of events which are in capability
"""
return [x for x in events if Capability.has(x)]
def _wakeup(self, timeout, delay=1):
"""
Wakeup not required for this instrument
"""
def _build_scheduler(self):
"""
Remove any previously scheduled event, then generate an absolute trigger to schedule the next
scan in case we lose some data and the next scan isn't triggered by got_chunk.
"""
try:
self._remove_scheduler(ScheduledJob.TAKE_SCAN)
log.debug('Successfully removed existing scheduled event TAKE_SCAN.')
except KeyError as ke:
log.debug('KeyError: %s', ke)
# this formula was derived from testing, should yield a slightly higher time than the actual
# time required to collect a single scan.
delay = self._param_dict.get(Parameter.AP) / 9 / self._param_dict.get(Parameter.NF) + 5
if delay > 0:
dt = datetime.datetime.now() + datetime.timedelta(seconds=delay)
job_name = ScheduledJob.TAKE_SCAN
config = {
DriverConfigKey.SCHEDULER: {
job_name: {
DriverSchedulerConfigKey.TRIGGER: {
DriverSchedulerConfigKey.TRIGGER_TYPE: TriggerType.ABSOLUTE,
DriverSchedulerConfigKey.DATE: dt
},
}
}
}
self.set_init_params(config)
self._add_scheduler_event(ScheduledJob.TAKE_SCAN, ProtocolEvent.TIMEOUT)
def _update_params(self, *args, **kwargs):
"""
Parameters are NOT set in the instrument by this method, as the RGA is configured anytime
a scan is started, as it may have been powered off since the last time we saw it.
"""
def _set_params(self, *args, **kwargs):
"""
Set parameters, raise a CONFIG_CHANGE event if necessary.
@throws InstrumentParameterException
"""
self._verify_not_readonly(*args, **kwargs)
params_to_set = args[0]
old_config = self._param_dict.get_all()
# check if in range
constraints = ParameterConstraints.dict()
parameters = Parameter.reverse_dict()
# step through the list of parameters
for key, val in params_to_set.iteritems():
# if constraint exists, verify we have not violated it
constraint_key = parameters.get(key)
if constraint_key in constraints:
var_type, minimum, maximum = constraints[constraint_key]
try:
value = var_type(val)
except ValueError:
raise exceptions.InstrumentParameterException(
'Unable to verify type - parameter: %s value: %s' % (key, val))
if val < minimum or val > maximum:
raise exceptions.InstrumentParameterException(
'Value out of range - parameter: %s value: %s min: %s max: %s' %
(key, val, minimum, maximum))
# all constraints met or no constraints exist, set the values
for key, val in params_to_set.iteritems():
if key in old_config:
self._param_dict.set_value(key, val)
else:
raise exceptions.InstrumentParameterException(
'Attempted to set unknown parameter: %s value: %s' % (key, val))
new_config = self._param_dict.get_all()
# If we changed anything, raise a CONFIG_CHANGE event
if old_config != new_config:
self._driver_event(DriverAsyncEvent.CONFIG_CHANGE)
def _check_error_byte(self, error_string):
"""
Check the error byte as returned by some commands
@param error_string: byte to be checked for errors
@throws InstrumentStateException
"""
# trim, just in case we received some garbage with our response...
if len(error_string) > 1:
error_string = error_string[-1]
if int(error_string):
self._async_raise_fsm_event(ProtocolEvent.ERROR)
error = 'RGA Error byte set: %s' % error_string
self._param_dict.set_value(Parameter.ERROR_REASON, error)
self._driver_event(DriverAsyncEvent.CONFIG_CHANGE)
raise exceptions.InstrumentStateException(error)
def _set_instrument_parameter(self, command):
"""
Set a parameter on the instrument.
We will attempt up to MAX_SET_RETRIES to set the value correctly, according to the following sequence:
1. send set command
2. verify error byte, if returned (per Responses)
3. send query command
4. verify returned value equals the set value (within tolerance)
@throws InstrumentParameterException
"""
response_type = getattr(Responses, command)
parameter = getattr(Parameter, command)
# store the configured setting
old_value = self._param_dict.format(parameter)
if old_value is None:
raise exceptions.InstrumentParameterException('Missing required instrument parameter: %s' % parameter)
log.debug('response_type: %s parameter: %s command: %s', response_type, getattr(Parameter, command), command)
# attempt to set the value up to MAX_SET_RETRIES times
for x in xrange(MAX_RETRIES):
if response_type == STATUS:
resp = self._do_cmd_resp(command, old_value)
self._check_error_byte(resp)
else:
self._do_cmd_no_resp(command, old_value)
# query the value from the instrument to load the parameter dictionary
self._do_cmd_resp(command)
# if values match, we were successful, return.
difference = abs(self._param_dict.format(parameter) - old_value)
if difference < CLOSE_ENOUGH:
return
log.error('Set attempt failed. Parameter: %s Set value: %s Returned value: %s difference: %.2f',
parameter, old_value, self._param_dict.get(parameter), difference)
# configuring the RGA failed, restore the setting from our configuration and raise an exception
self._param_dict.set_value(parameter, old_value)
raise exceptions.InstrumentParameterException('Unable to set instrument parameter: %s, attempted %d times' %
(parameter, MAX_RETRIES))
def _build_sieve_function(self):
"""
Build a sieve function based on the expected data size. Replace the previous sieve function in
the chunker. This should happen during the configuration phase.
"""
num_points = int(self._param_dict.get(Parameter.AP))
match_string = r'(?<=%s)(.{%d})' % (SCAN_START_SENTINEL, (num_points + 1) * 4)
matcher = re.compile(match_string, re.DOTALL)
def my_sieve(raw_data):
return_list = []
log.debug('SIEVE: pattern=%r, raw_data_len=%d', matcher.pattern, len(raw_data))
# do not descend into this loop unless we are at log level trace...
if log.isEnabledFor('trace'):
temp = raw_data[:]
while temp:
log.trace('SIEVE: raw_data: %s', temp[:32].encode('hex'))
if len(temp) > 32:
temp = temp[32:]
else:
temp = ''
for match in matcher.finditer(raw_data):
# if sentinel value present in this slice it is invalid
if not SCAN_START_SENTINEL in raw_data[match.start():match.end()]:
return_list.append((match.start(), match.end()))
return return_list
self._chunker.sieve = my_sieve
def _verify_filament(self):
"""
Ensure the filament is on and the current is within tolerance
@throws InstrumentProtocolException
"""
self._do_cmd_resp(InstrumentCommand.FILAMENT_EMISSION)
filament_difference = abs(1 - self._param_dict.get(Parameter.FL_ACTUAL))
if filament_difference > CLOSE_ENOUGH:
self._async_raise_fsm_event(ProtocolEvent.ERROR)
error = 'Filament power not withing tolerance (%.2f): %.2f' % (CLOSE_ENOUGH, filament_difference)
self._param_dict.set_value(Parameter.ERROR_REASON, error)
self._driver_event(DriverAsyncEvent.CONFIG_CHANGE)
raise exceptions.InstrumentProtocolException(error)
def _stop_instrument(self):
"""
Stop any running scan, flush the output buffer, turn off the filament and CDEM.
Update the parameter dictionary for FL.
"""
try:
self._remove_scheduler(ScheduledJob.TAKE_SCAN)
log.debug('Successfully removed existing scheduled event TAKE_SCAN.')
except KeyError as ke:
log.debug('KeyError: %s', ke)
self._do_cmd_resp(InstrumentCommand.INITIALIZE, 0)
self._do_cmd_resp(InstrumentCommand.INITIALIZE, 2)
self._do_cmd_resp(InstrumentCommand.FILAMENT_EMISSION)
self.in_scan = False
########################################################################
# Unknown handlers.
########################################################################
def _handler_unknown_discover(self, *args, **kwargs):
"""
Discover current state
@return (next_state, result)
"""
return ProtocolState.COMMAND, ResourceAgentState.IDLE
########################################################################
# Command handlers.
########################################################################
def _handler_command_get(self, *args, **kwargs):
"""
Get parameter
"""
return self._handler_get(*args, **kwargs)
def _handler_command_set(self, *args, **kwargs):
"""
Set parameter
"""
self._set_params(*args, **kwargs)
return None, None
def _handler_command_start_direct(self):
"""
Start direct access
@return next_state, (next_agent_state, None)
"""
return ProtocolState.DIRECT_ACCESS, (ResourceAgentState.DIRECT_ACCESS, None)
def _handler_command_start_scan(self):
"""
Start a scan
@return next_state, (next_agent_state, None)
"""
return ProtocolState.SCAN, (ResourceAgentState.STREAMING, None)
########################################################################
# Direct access handlers.
########################################################################
def _handler_direct_access_enter(self, *args, **kwargs):
"""
Enter direct access state.
"""
# Tell driver superclass to send a state change event.
# Superclass will query the state.
self._driver_event(DriverAsyncEvent.STATE_CHANGE)
self._sent_cmds = []
def _handler_direct_access_execute_direct(self, data):
"""
Forward direct access commands to the instrument.
@return next_state, (next_agent_state, None)
"""
self._do_cmd_direct(data)
# add sent command to list for 'echo' filtering in callback
self._sent_cmds.append(data)
return None, (None, None)
def _handler_direct_access_stop_direct(self):
"""
Stop direct access, return to COMMAND.
@return next_state, (next_agent_state, None)
"""
return ProtocolState.COMMAND, (ResourceAgentState.COMMAND, None)
########################################################################
# Scan handlers
########################################################################
def _handler_scan_enter(self, *args, **kwargs):
"""
Enter the scan state. Configure the RGA, start the first scan and the scheduler.
@throws InstrumentTimeoutException
"""
for attempt in range(1, MAX_RETRIES+1):
try:
self._handler_scan_configure_rga()
self._async_raise_fsm_event(ProtocolEvent.TAKE_SCAN)
self._build_scheduler()
self._driver_event(DriverAsyncEvent.STATE_CHANGE)
return
except exceptions.InstrumentTimeoutException:
log.error('Failed to configure the RGA - attempt %d', attempt)
self._async_raise_fsm_event(ProtocolEvent.ERROR)
error = 'Failed to configure RGA and start scanning.'
self._param_dict.set_value(Parameter.ERROR_REASON, error)
self._driver_event(DriverAsyncEvent.CONFIG_CHANGE)
raise exceptions.InstrumentTimeoutException(error)
def _handler_scan_exit(self, *args, **kwargs):
"""
Exit scan. Delete the scheduler.
"""
try:
self._remove_scheduler(ScheduledJob.TAKE_SCAN)
except KeyError:
log.error("_remove_scheduler could not find: %s", ScheduledJob.TAKE_SCAN)
def _handler_scan_configure_rga(self):
"""
Send the appropriate configuration to the RGA and update the chunker sieve function for the
correct data length.
"""
# initialize the connection
self._do_cmd_resp(InstrumentCommand.INITIALIZE, 0)
# set these
set_commands = [
(InstrumentCommand.ELECTRON_ENERGY, Parameter.EE),
(InstrumentCommand.ION_ENERGY, Parameter.IE),
(InstrumentCommand.FOCUS_VOLTAGE, Parameter.VF),
(InstrumentCommand.NOISE_FLOOR, Parameter.NF),
(InstrumentCommand.STEPS_PER_AMU, Parameter.SA),
(InstrumentCommand.INITIAL_MASS, Parameter.MI),
(InstrumentCommand.FINAL_MASS, Parameter.MF),
]
for command, parameter in set_commands:
self._set_instrument_parameter(command)
# turn on the filament
self._set_instrument_parameter(InstrumentCommand.FILAMENT_EMISSION)
# query the read only items
for command in [InstrumentCommand.READINGS_PER_SCAN, InstrumentCommand.FILAMENT_EMISSION,
InstrumentCommand.ID, InstrumentCommand.CHECK_ERRORS]:
self._do_cmd_resp(command)
# publish the config as a status particle
pd = self._param_dict.get_all()
log.debug('parameter dictionary: %r', pd)
ts = ntplib.system_to_ntp_time(time.time())
self._driver_event(DriverAsyncEvent.SAMPLE, RGAStatusParticle(pd, port_timestamp=ts).generate())
# replace the sieve function
self._build_sieve_function()
def _handler_scan_take_scan(self, *args, **kwargs):
"""
place a sentinel value in the chunker, then perform one analog scan from the RGA
@return next_state, (next_agent_state, None)
"""
# empty the chunker
self._chunker.clean()
# place sentinel value in chunker
self._chunker.add_chunk(SCAN_START_SENTINEL, ntplib.system_to_ntp_time(time.time()))
self.scan_start_time = time.time()
if self.in_scan:
log.error('FAILED scan detected, in_scan sentinel set to TRUE')
self.in_scan = True
self._do_cmd_no_resp(InstrumentCommand.ANALOG_SCAN, 1)
return None, (None, None)
def _handler_scan_timeout(self, *args, **kwargs):
"""
Handle scan timeout
@return next_state, (next_agent_state, None)
"""
# timeout, clear the instrument buffers
self._do_cmd_resp(InstrumentCommand.INITIALIZE, 0)
# verify the filament is still on
self._verify_filament()
return self._handler_scan_take_scan()
def _handler_scan_stop_scan(self, *args, **kwargs):
"""
Stop scanning, go to COMMAND.
@return next_state, (next_agent_state, None)
"""
self._stop_instrument()
return ProtocolState.COMMAND, (ResourceAgentState.COMMAND, None)
def _handler_scan_error(self, *args, **kwargs):
"""
Stop scanning, go to ERROR.
@return next_state, (next_agent_state, None)
"""
self._stop_instrument()
return ProtocolState.ERROR, (ResourceAgentState.COMMAND, None)
########################################################################
# Error handlers
########################################################################
def _handler_error_clear(self):
"""
Leave the error state, return to COMMAND.
@return next_state, (next_agent_state, None)
"""
self._param_dict.set_value(Parameter.ERROR_REASON, '')
self._driver_event(DriverAsyncEvent.CONFIG_CHANGE)
return ProtocolState.COMMAND, (ResourceAgentState.COMMAND, None)
########################################################################
# Generic handlers
########################################################################
def _handler_generic_enter(self):
"""
Generic method to handle entering state.
"""
if self.get_current_state() != ProtocolState.UNKNOWN:
self._init_params()
self._driver_event(DriverAsyncEvent.STATE_CHANGE)
def _handler_generic_exit(self):
"""
def __init__(self, prompts, newline, driver_event):
"""
Protocol constructor.
@param prompts A BaseEnum class containing instrument prompts.
@param newline The newline.
@param driver_event Driver process event callback.
"""
# Construct protocol superclass.
CommandResponseInstrumentProtocol.__init__(self, prompts, newline, driver_event)
# Build protocol state machine.
self._protocol_fsm = ThreadSafeFSM(ProtocolState, ProtocolEvent,
ProtocolEvent.ENTER, ProtocolEvent.EXIT)
# Add event handlers for protocol state machine.
handlers = {
ProtocolState.UNKNOWN: [
(ProtocolEvent.ENTER, self._handler_generic_enter),
(ProtocolEvent.EXIT, self._handler_generic_exit),
(ProtocolEvent.DISCOVER, self._handler_unknown_discover),
],
ProtocolState.COMMAND: [
(ProtocolEvent.ENTER, self._handler_generic_enter),
(ProtocolEvent.EXIT, self._handler_generic_exit),
(ProtocolEvent.START_DIRECT, self._handler_command_start_direct),
(ProtocolEvent.GET, self._handler_command_get),
(ProtocolEvent.SET, self._handler_command_set),
(ProtocolEvent.START_SCAN, self._handler_command_start_scan),
],
ProtocolState.DIRECT_ACCESS: [
(ProtocolEvent.ENTER, self._handler_direct_access_enter),
(ProtocolEvent.EXIT, self._handler_generic_exit),
(ProtocolEvent.STOP_DIRECT, self._handler_direct_access_stop_direct),
(ProtocolEvent.EXECUTE_DIRECT, self._handler_direct_access_execute_direct),
],
ProtocolState.SCAN: [
(ProtocolEvent.ENTER, self._handler_scan_enter),
(ProtocolEvent.EXIT, self._handler_scan_exit),
(ProtocolEvent.STOP_SCAN, self._handler_scan_stop_scan),
(ProtocolEvent.TAKE_SCAN, self._handler_scan_take_scan),
(ProtocolEvent.TIMEOUT, self._handler_scan_timeout),
(ProtocolEvent.ERROR, self._handler_scan_error),
],
ProtocolState.ERROR: [
(ProtocolEvent.ENTER, self._handler_generic_enter),
(ProtocolEvent.EXIT, self._handler_generic_exit),
(ProtocolEvent.CLEAR, self._handler_error_clear),
(ProtocolEvent.GET, self._handler_command_get),
]
}
for state in handlers:
for event, handler in handlers[state]:
self._protocol_fsm.add_handler(state, event, handler)
# Construct the parameter dictionary containing device parameters,
# current parameter values, and set formatting functions.
self._build_param_dict()
self._build_command_dict()
self._build_driver_dict()
# Add build handlers for device commands.
for command in InstrumentCommand.list():
self._add_build_handler(command, self._generic_build_handler)
# Add response handlers for device commands.
for command in InstrumentCommand.list():
self._add_response_handler(command, functools.partial(self._generic_response_handler, command=command))
# State state machine in UNKNOWN state.
self._protocol_fsm.start(ProtocolState.UNKNOWN)
# commands sent sent to device to be filtered in responses for telnet DA
self._sent_cmds = []
self._chunker = StringChunker(Protocol.sieve_function)
self.initialize_scheduler()
# all calls to do_cmd_resp should expect RESPONSE_REGEX and use TIMEOUT. Freeze these arguments...
self._do_cmd_resp = functools.partial(self._do_cmd_resp, response_regex=RESPONSE_REGEX, timeout=TIMEOUT)
# these variables are used to track scan time and completion status
# for development and performance data
self.scan_start_time = 0
self.in_scan = False
def test_overlap(self):
self.assertEqual([(0, 5)], StringChunker._prune_overlaps([(0, 5)]))
self.assertEqual([], StringChunker._prune_overlaps([]))
self.assertEqual([(0, 5)], StringChunker._prune_overlaps([(0, 5), (3, 6)]))
self.assertEqual([(0, 5), (5, 7)], StringChunker._prune_overlaps([(0, 5), (5, 7), (6, 8)]))
class UnitTestStringChunker(MiUnitTestCase):
"""
Test the basic functionality of the chunker system via unit tests
"""
# For testing, use PAR sensor data here...short and easy to work with...
# But cheat with the checksum. Make it easy to recognize which sample
SAMPLE_1 = "SATPAR0229,10.01,2206748111,111"
SAMPLE_2 = "SATPAR0229,10.02,2206748222,222"
SAMPLE_3 = "SATPAR0229,10.03,2206748333,333"
FRAGMENT_1 = "SATPAR0229,10.01,"
FRAGMENT_2 = "2206748544,123"
FRAGMENT_SAMPLE = FRAGMENT_1+FRAGMENT_2
MULTI_SAMPLE_1 = "%s\r\n%s" % (SAMPLE_1,
SAMPLE_2)
TIMESTAMP_1 = 3569168821.102485
TIMESTAMP_2 = 3569168822.202485
TIMESTAMP_3 = 3569168823.302485
@staticmethod
def sieve_function(raw_data):
""" The method that splits samples
"""
return_list = []
pattern = r'SATPAR(?P<sernum>\d{4}),(?P<timer>\d{1,7}.\d\d),(?P<counts>\d{10}),(?P<checksum>\d{1,3})'
regex = re.compile(pattern)
for match in regex.finditer(raw_data):
return_list.append((match.start(), match.end()))
log.debug("Sieving: %s...%s",
raw_data[match.start():match.start()+5],
raw_data[match.end()-5:match.end()])
return return_list
def setUp(self):
""" Setup a chunker for use in tests """
self._chunker = StringChunker(UnitTestStringChunker.sieve_function)
def test_sieve(self):
"""
Do a quick test of the sieve to make sure it does what we want.
"""
self.assertEquals([(0,31)],
UnitTestStringChunker.sieve_function(self.SAMPLE_1))
self.assertEquals([],
UnitTestStringChunker.sieve_function(self.FRAGMENT_1))
self.assertEquals([(0,31), (33, 64)],
UnitTestStringChunker.sieve_function(self.MULTI_SAMPLE_1))
def test_regex_sieve(self):
"""
Do a test of the regex based sieve to make sure it does what we want.
"""
pattern = r'SATPAR(?P<sernum>\d{4}),(?P<timer>\d{1,7}.\d\d),(?P<counts>\d{10}),(?P<checksum>\d{1,3})'
regex = re.compile(pattern)
self._chunker = StringChunker(partial(self._chunker.regex_sieve_function, regex_list=[regex]))
self.assertEquals([(0,31)],
self._chunker.regex_sieve_function(self.SAMPLE_1, [regex]))
self.assertEquals([],
self._chunker.regex_sieve_function(self.FRAGMENT_1, [regex]))
self.assertEquals([(0,31), (33, 64)],
self._chunker.regex_sieve_function(self.MULTI_SAMPLE_1, [regex]))
def test_make_chunks(self):
sample_string = "Foo%sBar%sBat" % (self.SAMPLE_1, self.SAMPLE_2)
self._chunker.add_chunk(sample_string, self.TIMESTAMP_1)
chunks = self._chunker.chunks
self.assertEqual(len(chunks), 2)
self.assertEqual(chunks[0][0], self.TIMESTAMP_1)
self.assertEqual(chunks[0][1], self.SAMPLE_1)
self.assertEqual(chunks[1][1], self.SAMPLE_2)
def test_add_get_simple(self):
"""
Add a simple string of data to the buffer, get the next chunk out
"""
self._chunker.add_chunk(self.SAMPLE_1, self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(time, self.TIMESTAMP_1)
self.assertEquals(result, self.SAMPLE_1)
# It got cleared at the last fetch...
(time, result) = self._chunker.get_next_data()
self.assertEquals(time, None)
self.assertEquals(result, None)
self.assertEqual(self._chunker.buffer, '')
def test_rebase_timestamps(self):
"""
Test an add/get without cleaning
"""
self._chunker.add_chunk(self.SAMPLE_1, self.TIMESTAMP_1)
self._chunker.add_chunk("BLEH", self.TIMESTAMP_2)
self._chunker.get_next_data()
timestamps = self._chunker.timestamps
self.assertEqual(len(timestamps), 1)
self.assertEqual(timestamps[0][0], 0)
self.assertEqual(timestamps[0][1], 4)
self.assertEqual(timestamps[0][2], self.TIMESTAMP_2)
def test_add_many_get_simple(self):
"""
Add a few simple strings of data to the buffer, get the chunks out
"""
self._chunker.add_chunk(self.SAMPLE_1, self.TIMESTAMP_1)
self._chunker.add_chunk(self.SAMPLE_2, self.TIMESTAMP_2)
self._chunker.add_chunk(self.SAMPLE_3, self.TIMESTAMP_3)
(time, result) = self._chunker.get_next_data()
self.assertEquals(time, self.TIMESTAMP_1)
self.assertEquals(result, self.SAMPLE_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(time, self.TIMESTAMP_2)
self.assertEquals(result, self.SAMPLE_2)
(time, result) = self._chunker.get_next_data()
self.assertEquals(time, self.TIMESTAMP_3)
self.assertEquals(result, self.SAMPLE_3)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, None)
self.assertEquals(time, None)
def test_add_get_fragment(self):
"""
Add some fragments of a string, then verify that value is stitched together
"""
# Add a part of a sample
self._chunker.add_chunk(self.FRAGMENT_1, self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(time, None)
self.assertEquals(result, None)
# add the rest of the sample
self._chunker.add_chunk(self.FRAGMENT_2, self.TIMESTAMP_2)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, self.FRAGMENT_SAMPLE)
self.assertEquals(time, self.TIMESTAMP_1)
def test_add_multiple_in_one(self):
"""
Test multiple data bits input in a single sample. They will ultimately
need to be split apart.
"""
self._chunker.add_chunk(self.MULTI_SAMPLE_1, self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_1)
self.assertEquals(time, self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(time, self.TIMESTAMP_1)
self.assertEquals(result, self.SAMPLE_2)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, None)
self.assertEquals(time, None)
def test_funky_chunks(self):
def funky_sieve(_):
return [(3,6),(0,3)]
self._chunker = StringChunker(funky_sieve)
self._chunker.add_chunk("BarFoo", self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, "Bar")
self.assertEquals(time, self.TIMESTAMP_1)
(time, result) = self._chunker.get_next_data()
self.assertEquals(result, "Foo")
self.assertEquals(time, self.TIMESTAMP_1)
def test_overlap(self):
self.assertEqual([(0, 5)], StringChunker._prune_overlaps([(0, 5)]))
self.assertEqual([], StringChunker._prune_overlaps([]))
self.assertEqual([(0, 5)], StringChunker._prune_overlaps([(0, 5), (3, 6)]))
self.assertEqual([(0, 5), (5, 7)], StringChunker._prune_overlaps([(0, 5), (5, 7), (6, 8)]))
class UnitTestStringChunker(MiUnitTestCase):
"""
Test the basic functionality of the chunker system via unit tests
"""
# For testing, use PAR sensor data here...short and easy to work with...
# But cheat with the checksum. Make it easy to recognize which sample
SAMPLE_1 = "SATPAR0229,10.01,2206748111,111"
SAMPLE_2 = "SATPAR0229,10.02,2206748222,222"
SAMPLE_3 = "SATPAR0229,10.03,2206748333,333"
FRAGMENT_1 = "SATPAR0229,10.01,"
FRAGMENT_2 = "2206748544,123"
FRAGMENT_SAMPLE = FRAGMENT_1+FRAGMENT_2
MULTI_SAMPLE_1 = "%s\r\n%s" % (SAMPLE_1,
SAMPLE_2)
@staticmethod
def sieve_function(raw_data):
""" The method that splits samples
"""
return_list = []
pattern = r'SATPAR(?P<sernum>\d{4}),(?P<timer>\d{1,7}.\d\d),(?P<counts>\d{10}),(?P<checksum>\d{1,3})'
regex = re.compile(pattern)
for match in regex.finditer(raw_data):
return_list.append((match.start(), match.end()))
log.debug("Sieving: %s...%s",
raw_data[match.start():match.start()+5],
raw_data[match.end()-5:match.end()])
return return_list
def setUp(self):
""" Setup a chunker for use in tests """
self._chunker = StringChunker(UnitTestStringChunker.sieve_function)
def _display_chunk_list(self, data, chunk_list):
""" Display the data as viewed through the chunk list """
data_list = []
if chunk_list == None:
return data_list
for (s, e) in chunk_list:
data_list.append(data[s:e])
return data_list
def test_sieve(self):
"""
Do a quick test of the sieve to make sure it does what we want.
"""
self.assertEquals([(0,31)],
UnitTestStringChunker.sieve_function(self.SAMPLE_1))
self.assertEquals([],
UnitTestStringChunker.sieve_function(self.FRAGMENT_1))
self.assertEquals([(0,31), (33, 64)],
UnitTestStringChunker.sieve_function(self.MULTI_SAMPLE_1))
def test_generate_data_lists(self):
sample_string = "Foo%sBar%sBat" % (self.SAMPLE_1, self.SAMPLE_2)
self._chunker.add_chunk(sample_string)
lists = self._chunker._generate_data_lists()
log.debug("Data chunk list: %s",
self._display_chunk_list(sample_string,
lists['data_chunk_list']))
self.assertEquals(lists['data_chunk_list'], [(3,34), (37, 68)])
log.debug("Non-data chunk list: %s",
self._display_chunk_list(sample_string,
lists['non_data_chunk_list']))
self.assertEquals(lists['non_data_chunk_list'], [(0, 3), (34, 37)])
def test_clean_chunk_list(self):
test_str = "abcdefghijklmnopqrstuvwxyz"
short_test_str = test_str[10:]
test_list = [(3, 5), (8, 12), (20, 25)]
log.debug("Test string: %s", test_str)
log.debug("Raw list: %s", self._display_chunk_list(test_str, test_list))
result = self._chunker._clean_chunk_list(test_list, 10)
log.debug("Shortened test string: %s", short_test_str)
log.debug("Cleaned list: %s", self._display_chunk_list(short_test_str,
result))
self.assertEquals(result, [(0, 2), (10, 15)])
def test_add_get_simple(self):
"""
Add a simple string of data to the buffer, get the next chunk out
"""
self._chunker.add_chunk(self.SAMPLE_1)
result = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_1)
# It got cleared at the last fetch...
result = self._chunker.get_next_data()
self.assertEquals(result, None)
result = self._chunker.get_next_non_data()
self.assertEquals(result, None)
def test_no_clean_data(self):
"""
Test an add/get without cleaning
"""
self._chunker.add_chunk(self.SAMPLE_1)
result = self._chunker.get_next_data(clean=False)
self.assertEquals(result, self.SAMPLE_1)
# It did NOT get cleared at the last fetch...
result = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_1)
# and now it did
result = self._chunker.get_next_data()
self.assertEquals(result, None)
def test_add_many_get_simple(self):
"""
Add a few simple strings of data to the buffer, get the chunks out
"""
self._chunker.add_chunk(self.SAMPLE_1)
self._chunker.add_chunk(self.SAMPLE_2)
self._chunker.add_chunk(self.SAMPLE_3)
result = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_1)
result = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_2)
result = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_3)
result = self._chunker.get_next_data()
self.assertEquals(result, None)
def test_get_non_data(self):
"""
Get some non-data blocks
"""
self._chunker.add_chunk("Foo")
self.assertEquals(len(self._chunker.nondata_chunk_list), 1)
self.assertEquals(len(self._chunker.data_chunk_list), 0)
self._chunker.add_chunk(self.SAMPLE_1)
self.assertEquals(len(self._chunker.nondata_chunk_list), 1)
self.assertEquals(len(self._chunker.data_chunk_list), 1)
self._chunker.add_chunk("Bar")
self._chunker.add_chunk("Bat")
self.assertEquals(len(self._chunker.nondata_chunk_list), 2)
self.assertEquals(len(self._chunker.data_chunk_list), 1)
self._chunker.add_chunk(self.SAMPLE_2)
self.assertEquals(len(self._chunker.nondata_chunk_list), 2)
self.assertEquals(len(self._chunker.data_chunk_list), 2)
self._chunker.add_chunk("Baz")
self.assertEquals(len(self._chunker.nondata_chunk_list), 3)
self.assertEquals(len(self._chunker.data_chunk_list), 2)
result = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_1)
result = self._chunker.get_next_non_data()
self.assertEquals(result, "BarBat")
result = self._chunker.get_next_non_data()
self.assertEquals(result, "Baz")
result = self._chunker.get_next_data()
self.assertEquals(result, None)
def test_add_get_fragment(self):
"""
Add some fragments of a string, then verify that value is stitched together
"""
# Add a part of a sample
self._chunker.add_chunk(self.FRAGMENT_1)
result = self._chunker.get_next_data()
self.assertEquals(result, None)
self.assertEquals(len(self._chunker.nondata_chunk_list), 1)
self.assertEquals(len(self._chunker.data_chunk_list), 0)
# add the rest of the sample
self._chunker.add_chunk(self.FRAGMENT_2)
self.assertEquals(len(self._chunker.nondata_chunk_list), 0)
self.assertEquals(len(self._chunker.data_chunk_list), 1)
result = self._chunker.get_next_data()
self.assertEquals(result, self.FRAGMENT_SAMPLE)
def test_add_multiple_in_one(self):
"""
Test multiple data bits input in a single sample. They will ultimately
need to be split apart.
"""
self._chunker.add_chunk(self.MULTI_SAMPLE_1)
result = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_1)
result = self._chunker.get_next_data()
self.assertEquals(result, self.SAMPLE_2)
result = self._chunker.get_next_data()
self.assertEquals(result, None)
def test_get_raw(self):
"""
Test the ability to get raw data, but not totally hose data strings
"""
# Put some data fragments in
self._chunker.add_chunk("Foo")
self._chunker.add_chunk(self.SAMPLE_1)
self._chunker.add_chunk(self.FRAGMENT_1)
self._chunker.add_chunk(self.FRAGMENT_2)
self._chunker.add_chunk("Baz")
# Get a raw chunk out
result = self._chunker.get_next_raw()
self.assertEquals(result, "Foo")
result = self._chunker.get_next_raw()
self.assertEquals(result, self.SAMPLE_1)
result = self._chunker.get_next_raw()
self.assertEquals(result, self.FRAGMENT_1) # Fragments got ripped up
result = self._chunker.get_next_data()
self.assertEquals(result, None)
def test_funky_chunks(self):
def funky_sieve(data):
return [(3,6),(0,3)]
self._chunker = StringChunker(funky_sieve)
self._chunker.add_chunk("BarFoo")
result = self._chunker.get_next_data()
self.assertEquals(result, "Bar")
result = self._chunker.get_next_data()
self.assertEquals(result, "Foo")
def test_overlap(self):
self.assertFalse(StringChunker.overlaps([(0, 5)]))
self.assertFalse(StringChunker.overlaps([]))
self.assertTrue(StringChunker.overlaps([(0, 5), (3, 6)]))
self.assertTrue(StringChunker.overlaps([(0, 5), (5, 7), (6, 8)]))
self.assertTrue(StringChunker.overlaps([(0, 5), (6, 9), (5, 7)]))
def overlap_sieve(data):
return [(0,3),(2,6)]
self._chunker = StringChunker(overlap_sieve)
self.assertRaises(SampleException, self._chunker.add_chunk, "foobar")
