def test_blast_wrong_input(self):
for i in self.neg_fp:
for aligner in ['blastp', 'blastx']:
with self.assertRaisesRegex(
ApplicationError,
r'(Error reading file)|(Invalid input file format)'):
search_protein_homologs(
i, self.db, self.temp_dir, aligner)
def test_blast(self):
for aligner, query, exp in self.blast:
res = search_protein_homologs(
query, self.db, self.temp_dir, aligner)
with open(res) as o, open(exp) as e:
self.assertEqual(o.read(), e.read())