def test_init(self):
try:
temp = thermodynamics.mmThermo(seed=self.seed)
self.assertIsInstance(temp.fold, vienna.RNAvienna)
self.assertEqual(temp.temperature, 37.0)
temp = thermodynamics.mmThermo(seed=self.seed, temperature=0)
self.assertEqual(temp.temperature, 0)
except EnvironmentError:
pass
def __init_thermodynamics(self, **args):
try:
self._thermodynamic = thermodynamics.mmThermo(self._seed, **args)
except EnvironmentError:
warnings.warn((
"RNAVienna not available, falling back to Python Only mode. "
"Please Note that thermodynamic Values will NOT be available. "
), RuntimeWarning)
self.model = 'python_only_seed'