def log_component_run(
component_run: ComponentRun,
set_dependencies_from_inputs=True,
staleness_threshold: int = (60 * 60 * 24 * 30),
):
"""Takes client-facing ComponentRun object and logs it to the DB."""
store = Store(_db_uri)
# Make dictionary object
component_run_dict = component_run.to_dictionary()
component_run_sql = store.initialize_empty_component_run(
component_run.component_name)
# Add relevant attributes
if component_run_dict["start_timestamp"]:
component_run_sql.set_start_timestamp(
component_run_dict["start_timestamp"])
if component_run_dict["end_timestamp"]:
component_run_sql.set_end_timestamp(
component_run_dict["end_timestamp"])
if component_run_dict["notes"]:
component_run_sql.add_notes(component_run_dict["notes"])
component_run_sql.set_git_hash(component_run_dict["git_hash"])
component_run_sql.set_git_tags(component_run_dict["git_tags"])
component_run_sql.set_code_snapshot(component_run_dict["code_snapshot"])
# Add I/O
component_run_sql.add_inputs([
store.get_io_pointer(inp.name,
inp.value,
pointer_type=inp.pointer_type)
for inp in component_run_dict["inputs"]
])
component_run_sql.add_outputs([
store.get_io_pointer(out.name,
out.value,
pointer_type=out.pointer_type)
for out in component_run_dict["outputs"]
])
# Create component if it does not exist
create_component(component_run.component_name, "", "")
# Add dependencies if there is flag to automatically set
if set_dependencies_from_inputs:
store.set_dependencies_from_inputs(component_run_sql)
# Add dependencies explicitly stored in the component run
for dependency in component_run_dict["dependencies"]:
cr = store.get_history(dependency, 1)[0]
component_run_sql.set_upstream(cr)
store.commit_component_run(component_run_sql,
staleness_threshold=staleness_threshold)
class TestDags(unittest.TestCase):
def setUp(self):
self.store = Store("test")
def testLinkedList(self):
# Create chain of component runs
expected_result = []
num_runs = 10
for i in range(1, num_runs + 1):
self.store.create_component(f"mock_component_{i}", "", "")
inp = self.store.get_io_pointer(f"iop_{i}")
out = self.store.get_io_pointer(f"iop_{i + 1}")
cr = self.store.initialize_empty_component_run(
f"mock_component_{i}")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(inp)
cr.add_output(out)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
expected_result.append((num_runs - i, i))
# Reverse the expected result
expected_result.reverse()
# Trace the final output
trace = self.store.trace("iop_11")
level_id = [(level, cr.id) for level, cr in trace]
self.assertEqual(expected_result, level_id)
def testVersionedComputation(self):
# Run the same computation many times
self.store.create_component("mock_component", "", "")
num_runs = 10
for i in range(1, num_runs + 1):
inp = self.store.get_io_pointer("inp")
out = self.store.get_io_pointer("out")
cr = self.store.initialize_empty_component_run("mock_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(inp)
cr.add_output(out)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Trace the out pointer. Only most recent run ID should show.
trace = self.store.trace("out")
self.assertEqual(len(trace), 1)
self.assertEqual(trace[0][0], 0)
self.assertEqual(trace[0][1].id, num_runs)
def testTree(self):
# Create a tree of component runs, 5 levels deep
num_levels = 2
global cr_counter
global iop_counter
cr_counter = 1
iop_counter = 1
def create_tree(level, inp):
if level == num_levels:
return
global cr_counter
global iop_counter
self.store.create_component(f"mock_component_{cr_counter}", "", "")
cr = self.store.initialize_empty_component_run(
f"mock_component_{cr_counter}")
cr_counter += 1
cr.set_start_timestamp()
cr.set_end_timestamp()
# Create output pointers
out1 = self.store.get_io_pointer(f"iop_{iop_counter}")
iop_counter += 1
out2 = self.store.get_io_pointer(f"iop_{iop_counter}")
iop_counter += 1
# Add and commit component run
cr.add_input(inp)
cr.add_outputs([out1, out2])
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Create left and right trees
create_tree(level + 1, out1)
create_tree(level + 1, out2)
# Create first input pointer and tree of computation
inp = self.store.get_io_pointer(f"iop_{iop_counter}")
iop_counter += 1
create_tree(0, inp)
# Grab last iop id and trace it
last_iop_id = f"iop_{iop_counter - 1}"
trace = self.store.trace(last_iop_id)
level_id = [(level, cr.id) for level, cr in trace]
self.assertEqual(level_id, [(0, 3), (1, 1)])
def testCycle(self):
# Create cycle. Since dependencies are versioned, we shouldn't run
# into problems.
# Create io pointers and components
iop1 = self.store.get_io_pointer("iop1")
iop2 = self.store.get_io_pointer("iop2")
self.store.create_component("component_1", "", "")
self.store.create_component("component_2", "", "")
# Create component runs
cr = self.store.initialize_empty_component_run("component_1")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(iop1)
cr.add_output(iop2)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
cr = self.store.initialize_empty_component_run("component_2")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(iop2)
cr.add_output(iop1)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Trace iop1
trace_1 = [(level, cr.id) for level, cr in self.store.trace("iop1")]
trace_2 = [(level, cr.id) for level, cr in self.store.trace("iop2")]
self.assertEqual(trace_1, [(0, 2), (1, 1)])
self.assertEqual(trace_2, [(0, 1)])
def testStaleUpdate(self):
# Create computation with stale update.
iop1 = self.store.get_io_pointer("iop1")
iop2 = self.store.get_io_pointer("iop2")
iop3 = self.store.get_io_pointer("iop3")
iop4 = self.store.get_io_pointer("iop4")
self.store.create_component("component_1", "", "")
self.store.create_component("component_2", "", "")
# Create first component
cr = self.store.initialize_empty_component_run("component_1")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(iop1)
cr.add_output(iop2)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Create second component run
cr = self.store.initialize_empty_component_run("component_1")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(iop1)
cr.add_output(iop3)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Create third component run that depends on the first (stale update)
cr = self.store.initialize_empty_component_run("component_2")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(iop2)
cr.add_output(iop4)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Trace iop4
trace = [(level, cr.id, cr.stale)
for level, cr in self.store.trace("iop4")]
res = [
(
0,
3,
[
"component_1 (ID 1) has 1 fresher run that began " +
"before this component run started."
],
),
(1, 1, []),
]
self.assertEqual(trace, res)
def testStaleTime(self):
# Create computation with stale update.
iop1 = self.store.get_io_pointer("iop1")
iop2 = self.store.get_io_pointer("iop2")
iop3 = self.store.get_io_pointer("iop3")
self.store.create_component("component_1", "", "")
self.store.create_component("component_2", "", "")
now = datetime.utcnow()
# Create first component
cr = self.store.initialize_empty_component_run("component_1")
start_month = now.month - 2 if now.month > 2 else (12 + now.month) - 2
start_year = now.year if now.month > 2 else now.year - 1
start_date = now.replace(month=start_month, year=start_year)
cr.set_start_timestamp(start_date)
cr.set_end_timestamp()
cr.add_input(iop1)
cr.add_output(iop2)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Create second component run
cr = self.store.initialize_empty_component_run("component_2")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(iop2)
cr.add_output(iop3)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Trace
trace = [(level, cr.id, cr.stale)
for level, cr in self.store.trace("iop3")]
res = [
(
0,
2,
[
"component_1 (ID 1) was run " +
f"{(now - start_date).days} days" + " ago."
],
),
(1, 1, []),
]
self.assertEqual(trace, res)
class TestStore(unittest.TestCase):
def setUp(self):
self.store = Store("test")
def testComponent(self):
self.store.create_component("test_component", "test_description",
"shreya")
component = self.store.get_component("test_component")
self.assertEqual(component.name, "test_component")
# Retrieve components with owner
components = self.store.get_components(owner="shreya")
self.assertEqual(1, len(components))
def testCompleteComponentRun(self):
# Create component
self.store.create_component("test_component", "test_description",
"shreya")
# Create component run
cr = self.store.initialize_empty_component_run("test_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(IOPointer("inp"))
cr.add_output(IOPointer("out"))
self.store.commit_component_run(cr)
# Test retrieval
component_runs = self.store.get_history("test_component", limit=None)
self.assertEqual(1, len(component_runs))
self.assertEqual(component_runs[0], cr)
def testLogComponentRunWithoutComponentCreated(self):
# Create a ComponentRun
cr = self.store.initialize_empty_component_run("test_component_new")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(IOPointer("inp"))
cr.add_output(IOPointer("out"))
self.store.commit_component_run(cr)
# Test retrieval
component_runs = self.store.get_history("test_component_new",
limit=None)
self.assertEqual(1, len(component_runs))
self.assertEqual(component_runs[0], cr)
def testIncompleteComponentRun(self):
# Create component
self.store.create_component("test_component", "test_description",
"shreya")
# Create incomplete component run
cr = self.store.initialize_empty_component_run("test_component")
with self.assertRaises(RuntimeError):
self.store.commit_component_run(cr)
def testTags(self):
# Create component without tags
self.store.create_component("test_component", "test_description",
"shreya")
# Add tags
self.store.add_tags_to_component("test_component", ["tag1", "tag2"])
# Test retrieval
component = self.store.get_component("test_component")
tags = [t.name for t in component.tags]
self.assertEqual(component.name, "test_component")
self.assertEqual(set(tags), set(["tag1", "tag2"]))
def testDuplicateTags(self):
# Create component without tags
self.store.create_component("test_component", "test_description",
"shreya")
# Add duplicate tags
self.store.add_tags_to_component("test_component", ["tag1", "tag1"])
# Test retrieval
component = self.store.get_component("test_component")
tags = [t.name for t in component.tags]
self.assertEqual(component.name, "test_component")
self.assertEqual(tags, ["tag1"])
def testIOPointer(self):
# Test there is no IOPointer
with self.assertRaises(RuntimeError):
self.store.get_io_pointer("iop", create=False)
# Create IOPointer
iop = self.store.get_io_pointer("iop")
iop2 = self.store.get_io_pointer("iop")
self.assertEqual(iop, iop2)
def testIOPointers(self):
# Create new IOPointers from scratch
iop_names = [f"iop_{i}" for i in range(100)]
iops = self.store.get_io_pointers(iop_names)
iops2 = self.store.get_io_pointers(iop_names)
self.assertEqual(set(iops), set(iops2))
def testKVIOPointer(self):
iop_name = "name"
iop_value = "value"
iop = self.store.get_io_pointer(iop_name, iop_value)
iop2 = self.store.get_io_pointer(iop_name, iop_value)
self.assertEqual(iop, iop2)
def testSetDependenciesFromInputs(self):
# Create IO pointers
inp = self.store.get_io_pointer("inp")
out = self.store.get_io_pointer("out")
another_out = self.store.get_io_pointer("another_out")
# Create two component runs that have the same output
self.store.create_component("test_component", "test_description",
"shreya")
for idx in range(2):
cr = self.store.initialize_empty_component_run("test_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(inp)
cr.add_output(out)
self.store.commit_component_run(cr)
# Create another two component runs that have the same output
self.store.create_component("test_component", "test_description",
"shreya")
for idx in range(2):
cr = self.store.initialize_empty_component_run("test_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(inp)
cr.add_output(another_out)
self.store.commit_component_run(cr)
# Create new component run that depends on "out" pointer
cr = self.store.initialize_empty_component_run("test_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_inputs([out, another_out])
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Retrieve latest component run and check dependencies
component_runs = self.store.get_history("test_component", limit=None)
self.assertTrue(component_runs[1] in component_runs[0].dependencies)
self.assertTrue(component_runs[3] in component_runs[0].dependencies)
def _set_up_computation(self):
# Create dag of computation
# Create component and IOPointers
for i in range(1, 5):
self.store.create_component(f"test_component_{i}",
"test_description", "shreya")
iop = [self.store.get_io_pointer(f"iop_{i}") for i in range(1, 5)]
# Create component runs
cr1 = self.store.initialize_empty_component_run("test_component_1")
cr1.set_start_timestamp()
cr1.set_end_timestamp()
cr1.add_output(iop[0])
self.store.set_dependencies_from_inputs(cr1)
self.store.commit_component_run(cr1)
cr2 = self.store.initialize_empty_component_run("test_component_2")
cr2.set_start_timestamp()
cr2.set_end_timestamp()
cr2.add_output(iop[0])
self.store.set_dependencies_from_inputs(cr2)
self.store.commit_component_run(cr2)
cr3 = self.store.initialize_empty_component_run("test_component_3")
cr3.set_start_timestamp()
cr3.set_end_timestamp()
cr3.add_input(iop[0])
cr3.add_outputs([iop[1], iop[2]])
self.store.set_dependencies_from_inputs(cr3)
self.store.commit_component_run(cr3)
cr4 = self.store.initialize_empty_component_run("test_component_4")
cr4.set_start_timestamp()
cr4.set_end_timestamp()
cr4.add_input(iop[2])
cr4.add_output(iop[3])
self.store.set_dependencies_from_inputs(cr4)
self.store.commit_component_run(cr4)
def testTrace(self):
self._set_up_computation()
# Call trace functionality
trace = self.store.trace("iop_4")
level_id = [(level, cr.id) for level, cr in trace]
self.assertEqual(level_id, [(0, 4), (1, 3), (2, 2)])
def testEmptyTrace(self):
with self.assertRaises(RuntimeError):
self.store.trace("some_weird_pointer")
with self.assertRaises(RuntimeError):
self.store.web_trace("some_weird_pointer")
def testWebTrace(self):
self._set_up_computation()
# Call web trace functionality. The ordering is nondeterministic.
expected_res = [{
"id":
"componentrun_4",
"label":
"test_component_4",
"hasCaret":
True,
"isExpanded":
True,
"stale": [],
"childNodes": [
{
"id": "iopointer_iop_4",
"label": "iop_4",
"hasCaret": False,
"parent": "componentrun_4",
},
{
"id":
"componentrun_3",
"label":
"test_component_3",
"hasCaret":
True,
"isExpanded":
True,
"stale": [],
"childNodes": [
{
"id": "iopointer_iop_2",
"label": "iop_2",
"hasCaret": False,
"parent": "componentrun_3",
},
{
"id": "iopointer_iop_3",
"label": "iop_3",
"hasCaret": False,
"parent": "componentrun_3",
},
{
"id":
"componentrun_2",
"label":
"test_component_2",
"hasCaret":
True,
"isExpanded":
True,
"stale": [],
"childNodes": [{
"id": "iopointer_iop_1",
"label": "iop_1",
"hasCaret": False,
"parent": "componentrun_2",
}],
},
],
},
],
}]
web_trace = self.store.web_trace("iop_4")
self.assertEqual(web_trace, expected_res)
def testBasicFlaggedOutputs(self):
# Create components and iopointers
self.store.create_component("test_component_A", "test_description",
"shreya")
self.store.create_component("test_component_B", "test_description",
"shreya")
iop = [self.store.get_io_pointer(f"iop_{i}") for i in range(1, 5)]
# Create component runs
# First pipeline
cr_A1 = self.store.initialize_empty_component_run("test_component_A")
cr_A1.set_start_timestamp()
cr_A1.set_end_timestamp()
cr_A1.add_outputs([iop[0], iop[1]])
self.store.set_dependencies_from_inputs(cr_A1)
self.store.commit_component_run(cr_A1)
cr_B1 = self.store.initialize_empty_component_run("test_component_B")
cr_B1.set_start_timestamp()
cr_B1.set_end_timestamp()
cr_B1.add_input(iop[0])
cr_B1.add_output(iop[2])
self.store.set_dependencies_from_inputs(cr_B1)
self.store.commit_component_run(cr_B1)
# Second pipeline, which builds off iop2
cr_B2 = self.store.initialize_empty_component_run("test_component_B")
cr_B2.set_start_timestamp()
cr_B2.set_end_timestamp()
cr_B2.add_input(iop[1])
cr_B2.add_output(iop[3])
self.store.set_dependencies_from_inputs(cr_B2)
self.store.commit_component_run(cr_B2)
# Flag iop_3 and iop_4
self.store.set_io_pointer_flag("iop_3", True)
self.store.set_io_pointer_flag("iop_4", True)
# Run diagnose. It should output
# [component_A, component_B, component_B]'s corresponding run IDs
_, res = self.store.review_flagged_outputs()
res = [(cr.id, count) for cr, count in res]
expected_res = [(1, 2), (3, 1), (2, 1)]
self.assertEqual(res, expected_res)
def testManyFlaggedOutputs(self):
# Create components and iopointers
self.store.create_component("test_component_A", "test_description",
"shreya")
self.store.create_component("test_component_B", "test_description",
"shreya")
self.store.create_component("test_component_C", "test_description",
"shreya")
iop = [self.store.get_io_pointer(f"iop_{i}") for i in range(1, 8)]
# Create component runs
# First pipeline
cr_A1 = self.store.initialize_empty_component_run("test_component_A")
cr_A1.set_start_timestamp()
cr_A1.set_end_timestamp()
cr_A1.add_outputs([iop[0], iop[1]])
self.store.set_dependencies_from_inputs(cr_A1)
self.store.commit_component_run(cr_A1)
cr_B1 = self.store.initialize_empty_component_run("test_component_B")
cr_B1.set_start_timestamp()
cr_B1.set_end_timestamp()
cr_B1.add_input(iop[0])
cr_B1.add_output(iop[2])
self.store.set_dependencies_from_inputs(cr_B1)
self.store.commit_component_run(cr_B1)
cr_C1 = self.store.initialize_empty_component_run("test_component_C")
cr_C1.set_start_timestamp()
cr_C1.set_end_timestamp()
cr_C1.add_inputs([iop[1], iop[2]])
cr_C1.add_output(iop[3])
self.store.set_dependencies_from_inputs(cr_C1)
self.store.commit_component_run(cr_C1)
# Second pipeline
cr_C2 = self.store.initialize_empty_component_run("test_component_C")
cr_C2.set_start_timestamp()
cr_C2.set_end_timestamp()
cr_C2.add_inputs([iop[1], iop[2]])
cr_C2.add_output(iop[4])
self.store.set_dependencies_from_inputs(cr_C2)
self.store.commit_component_run(cr_C2)
# Third pipeline
cr_C3 = self.store.initialize_empty_component_run("test_component_C")
cr_C3.set_start_timestamp()
cr_C3.set_end_timestamp()
cr_C3.add_inputs([iop[1], iop[2]])
cr_C3.add_output(iop[5])
self.store.set_dependencies_from_inputs(cr_C3)
self.store.commit_component_run(cr_C3)
# Fourth pipeline
cr_C4 = self.store.initialize_empty_component_run("test_component_C")
cr_C4.set_start_timestamp()
cr_C4.set_end_timestamp()
cr_C4.add_inputs([iop[1], iop[2]])
cr_C4.add_output(iop[6])
self.store.set_dependencies_from_inputs(cr_C4)
self.store.commit_component_run(cr_C4)
# Flag
self.store.set_io_pointer_flag("iop_4", True)
self.store.set_io_pointer_flag("iop_5", True)
self.store.set_io_pointer_flag("iop_6", True)
self.store.set_io_pointer_flag("iop_7", True)
_, res = self.store.review_flagged_outputs()
res = [(cr.component_name, cr.id, count) for cr, count in res]
expected_res = [
("test_component_B", 2, 4),
("test_component_A", 1, 4),
("test_component_C", 6, 1),
("test_component_C", 5, 1),
("test_component_C", 4, 1),
("test_component_C", 3, 1),
]
self.assertEqual(res, expected_res)
class TestDags(unittest.TestCase):
def setUp(self):
self.store = Store("test")
def testLinkedList(self):
# Create chain of component runs
expected_result = []
num_runs = 10
for i in range(1, num_runs + 1):
self.store.create_component(f"mock_component_{i}", "", "")
inp = self.store.get_io_pointer(f"iop_{i}")
out = self.store.get_io_pointer(f"iop_{i + 1}")
cr = self.store.initialize_empty_component_run(
f"mock_component_{i}")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(inp)
cr.add_output(out)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
expected_result.append((num_runs - i, i))
# Reverse the expected result
expected_result.reverse()
# Trace the final output
trace = self.store.trace("iop_11")
level_id = [(l, cr.id) for l, cr in trace]
self.assertEqual(expected_result, level_id)
def testVersionedComputation(self):
# Run the same computation many times
self.store.create_component("mock_component", "", "")
num_runs = 10
for i in range(1, num_runs + 1):
inp = self.store.get_io_pointer("inp")
out = self.store.get_io_pointer("out")
cr = self.store.initialize_empty_component_run("mock_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(inp)
cr.add_output(out)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Trace the out pointer. Only most recent run ID should show.
trace = self.store.trace("out")
self.assertEqual(len(trace), 1)
self.assertEqual(trace[0][0], 0)
self.assertEqual(trace[0][1].id, num_runs)
def testTree(self):
# Create a tree of component runs, 5 levels deep
num_levels = 2
global cr_counter
global iop_counter
cr_counter = 1
iop_counter = 1
def create_tree(level, inp):
if level == num_levels:
return
global cr_counter
global iop_counter
self.store.create_component(f"mock_component_{cr_counter}", "", "")
cr = self.store.initialize_empty_component_run(
f"mock_component_{cr_counter}")
cr_counter += 1
cr.set_start_timestamp()
cr.set_end_timestamp()
# Create output pointers
out1 = self.store.get_io_pointer(f"iop_{iop_counter}")
iop_counter += 1
out2 = self.store.get_io_pointer(f"iop_{iop_counter}")
iop_counter += 1
# Add and commit component run
cr.add_input(inp)
cr.add_outputs([out1, out2])
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Create left and right trees
create_tree(level + 1, out1)
create_tree(level + 1, out2)
# Create first input pointer and tree of computation
inp = self.store.get_io_pointer(f"iop_{iop_counter}")
iop_counter += 1
create_tree(0, inp)
# Grab last iop id and trace it
last_iop_id = f"iop_{iop_counter - 1}"
trace = self.store.trace(last_iop_id)
level_id = [(l, cr.id) for l, cr in trace]
self.assertEqual(level_id, [(0, 3), (1, 1)])
def testCycle(self):
# Create cycle. Since dependencies are versioned, we shouldn't run into problems.
# Create io pointers and components
iop1 = self.store.get_io_pointer("iop1")
iop2 = self.store.get_io_pointer("iop2")
self.store.create_component("component_1", "", "")
self.store.create_component("component_2", "", "")
# Create component runs
cr = self.store.initialize_empty_component_run("component_1")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(iop1)
cr.add_output(iop2)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
cr = self.store.initialize_empty_component_run("component_2")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(iop2)
cr.add_output(iop1)
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Trace iop1
trace_1 = [(l, cr.id) for l, cr in self.store.trace("iop1")]
trace_2 = [(l, cr.id) for l, cr in self.store.trace("iop2")]
self.assertEqual(trace_1, [(0, 2), (1, 1)])
self.assertEqual(trace_2, [(0, 1)])
def wrapper(*args, **kwargs):
# Get function information
filename = inspect.getfile(func)
function_name = func.__name__
# Construct component run object
store = Store(_db_uri)
component_run = store.initialize_empty_component_run(
component_name)
component_run.set_start_timestamp()
# Define trace helper
def trace_helper(frame, event, arg):
if event != "return":
return
logging.info(f"Inspecting {frame.f_code.co_filename}")
input_pointers = []
output_pointers = []
local_vars = frame.f_locals
# Add input_vars and output_vars as pointers
for var in input_vars:
if var not in local_vars:
logging.debug(
f"Variable {var} not in current stack frame.")
continue
val = local_vars[var]
if val == None:
logging.debug(f"Variable {var} has value {val}.")
continue
if isinstance(val, list):
input_pointers += store.get_io_pointers(val)
else:
input_pointers.append(store.get_io_pointer(str(val)))
for var in output_vars:
if var not in local_vars:
logging.debug(
f"Variable {var} not in current stack frame.")
continue
val = local_vars[var]
if val == None:
logging.debug(f"Variable {var} has value {val}.")
continue
if isinstance(val, list):
output_pointers += (store.get_io_pointers(
val, PointerTypeEnum.ENDPOINT) if endpoint else
store.get_io_pointers(val))
else:
output_pointers += ([
store.get_io_pointer(str(val),
PointerTypeEnum.ENDPOINT)
] if endpoint else [store.get_io_pointer(str(val))])
component_run.add_inputs(input_pointers)
component_run.add_outputs(output_pointers)
# Define tracer
def tracer(frame, event, arg):
if event == "call":
if (frame.f_code.co_name == function_name
and frame.f_code.co_filename == filename):
return trace_helper
return
# Run function under the tracer
sys.settrace(tracer)
try:
value = func(*args, **kwargs)
finally:
sys.settrace(None)
# Log relevant info
component_run.set_end_timestamp()
input_pointers = [store.get_io_pointer(inp) for inp in inputs]
output_pointers = ([
store.get_io_pointer(out, PointerTypeEnum.ENDPOINT)
for out in outputs
] if endpoint else [store.get_io_pointer(out) for out in outputs])
component_run.add_inputs(input_pointers)
component_run.add_outputs(output_pointers)
store.set_dependencies_from_inputs(component_run)
# Add code versions
try:
repo = git.Repo(search_parent_directories=True)
component_run.set_git_hash(str(repo.head.object.hexsha))
except:
logging.info("No git repo found.")
# Add source code if less than 2^16
func_source_code = inspect.getsource(func)
if len(func_source_code) < 2**16:
component_run.set_code_snapshot(
bytes(func_source_code, "ascii"))
# Commit component run object to the DB
store.commit_component_run(component_run)
return value
class TestStore(unittest.TestCase):
def setUp(self):
self.store = Store("test")
def testComponent(self):
self.store.create_component("test_component", "test_description", "shreya")
component = self.store.get_component("test_component")
self.assertEqual(component.name, "test_component")
# Retrieve components with owner
components = self.store.get_components_with_owner("shreya")
self.assertEqual(1, len(components))
def testCompleteComponentRun(self):
# Create component
self.store.create_component("test_component", "test_description", "shreya")
# Create component run
cr = self.store.initialize_empty_component_run("test_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(IOPointer("inp"))
cr.add_output(IOPointer("out"))
self.store.commit_component_run(cr)
# Test retrieval
component_runs = self.store.get_history("test_component", limit=None)
self.assertEqual(1, len(component_runs))
self.assertEqual(component_runs[0], cr)
def testIncompleteComponentRun(self):
# Create component
self.store.create_component("test_component", "test_description", "shreya")
# Create incomplete component run
cr = self.store.initialize_empty_component_run("test_component")
with self.assertRaises(RuntimeError):
self.store.commit_component_run(cr)
def testTags(self):
# Create component without tags
self.store.create_component("test_component", "test_description", "shreya")
# Add tags
self.store.add_tags_to_component("test_component", ["tag1", "tag2"])
# Test retrieval
component = self.store.get_component("test_component")
tags = [t.name for t in component.tags]
self.assertEqual(component.name, "test_component")
self.assertEqual(set(tags), set(["tag1", "tag2"]))
def testDuplicateTags(self):
# Create component without tags
self.store.create_component("test_component", "test_description", "shreya")
# Add duplicate tags
self.store.add_tags_to_component("test_component", ["tag1", "tag1"])
# Test retrieval
component = self.store.get_component("test_component")
tags = [t.name for t in component.tags]
self.assertEqual(component.name, "test_component")
self.assertEqual(tags, ["tag1"])
def testIOPointer(self):
# Test there is no IOPointer
with self.assertRaises(RuntimeError):
self.store.get_io_pointer("iop", create=False)
# Create IOPointer
iop = self.store.get_io_pointer("iop")
iop2 = self.store.get_io_pointer("iop")
self.assertEqual(iop, iop2)
def testIOPointers(self):
# Create new IOPointers from scratch
iop_names = [f"iop_{i}" for i in range(100)]
iops = self.store.get_io_pointers(iop_names)
iops2 = self.store.get_io_pointers(iop_names)
self.assertEqual(set(iops), set(iops2))
def testSetDependenciesFromInputs(self):
# Create IO pointers
inp = self.store.get_io_pointer("inp")
out = self.store.get_io_pointer("out")
another_out = self.store.get_io_pointer("another_out")
# Create two component runs that have the same output
self.store.create_component("test_component", "test_description", "shreya")
for idx in range(2):
cr = self.store.initialize_empty_component_run("test_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(inp)
cr.add_output(out)
self.store.commit_component_run(cr)
# Create another two component runs that have the same output
self.store.create_component("test_component", "test_description", "shreya")
for idx in range(2):
cr = self.store.initialize_empty_component_run("test_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_input(inp)
cr.add_output(another_out)
self.store.commit_component_run(cr)
# Create new component run that depends on "out" pointer
cr = self.store.initialize_empty_component_run("test_component")
cr.set_start_timestamp()
cr.set_end_timestamp()
cr.add_inputs([out, another_out])
self.store.set_dependencies_from_inputs(cr)
self.store.commit_component_run(cr)
# Retrieve latest component run and check dependencies
component_runs = self.store.get_history("test_component", limit=None)
self.assertTrue(component_runs[1] in component_runs[0].dependencies)
self.assertTrue(component_runs[3] in component_runs[0].dependencies)
def _set_up_computation(self):
# Create dag of computation
# Create component and IOPointers
self.store.create_component("test_component", "test_description", "shreya")
iop = [self.store.get_io_pointer(f"iop_{i}") for i in range(1, 5)]
# Create component runs
cr1 = self.store.initialize_empty_component_run("test_component")
cr1.set_start_timestamp()
cr1.set_end_timestamp()
cr1.add_output(iop[0])
self.store.set_dependencies_from_inputs(cr1)
self.store.commit_component_run(cr1)
cr2 = self.store.initialize_empty_component_run("test_component")
cr2.set_start_timestamp()
cr2.set_end_timestamp()
cr2.add_output(iop[0])
self.store.set_dependencies_from_inputs(cr2)
self.store.commit_component_run(cr2)
cr3 = self.store.initialize_empty_component_run("test_component")
cr3.set_start_timestamp()
cr3.set_end_timestamp()
cr3.add_input(iop[0])
cr3.add_outputs([iop[1], iop[2]])
self.store.set_dependencies_from_inputs(cr3)
self.store.commit_component_run(cr3)
cr4 = self.store.initialize_empty_component_run("test_component")
cr4.set_start_timestamp()
cr4.set_end_timestamp()
cr4.add_input(iop[2])
cr4.add_output(iop[3])
self.store.set_dependencies_from_inputs(cr4)
self.store.commit_component_run(cr4)
def testTrace(self):
self._set_up_computation()
# Call trace functionality
trace = self.store.trace("iop_4")
level_id = [(l, cr.id) for l, cr in trace]
self.assertEqual(level_id, [(0, 4), (1, 3), (2, 2)])
def testEmptyTrace(self):
with self.assertRaises(RuntimeError):
self.store.trace("some_weird_pointer")
with self.assertRaises(RuntimeError):
self.store.web_trace("some_weird_pointer")
def testWebTrace(self):
self._set_up_computation()
# Call web trace functionality. The ordering is nondeterministic.
expected_res = [
{
"id": "componentrun_4",
"label": "test_component",
"hasCaret": True,
"isExpanded": True,
"childNodes": [
{
"id": "iopointer_iop_4",
"label": "iop_4",
"hasCaret": False,
"parent": "componentrun_4",
},
{
"id": "componentrun_3",
"label": "test_component",
"hasCaret": True,
"isExpanded": True,
"childNodes": [
{
"id": "iopointer_iop_2",
"label": "iop_2",
"hasCaret": False,
"parent": "componentrun_3",
},
{
"id": "iopointer_iop_3",
"label": "iop_3",
"hasCaret": False,
"parent": "componentrun_3",
},
{
"id": "componentrun_2",
"label": "test_component",
"hasCaret": True,
"isExpanded": True,
"childNodes": [
{
"id": "iopointer_iop_1",
"label": "iop_1",
"hasCaret": False,
"parent": "componentrun_2",
}
],
},
],
},
],
}
]
web_trace = self.store.web_trace("iop_4")
self.assertEqual(web_trace, expected_res)
def wrapper(*args, **kwargs):
# Get function information
filename = inspect.getfile(func)
function_name = func.__name__
# Construct component run object
store = Store(_db_uri)
component_run = store.initialize_empty_component_run(
component_name)
component_run.set_start_timestamp()
# Define trace helper
frame = None
trace = sys.gettrace()
def trace_helper(_frame, event, arg):
nonlocal frame
if frame is None and event == "call":
frame = _frame
sys.settrace(trace)
return trace
# Run function under the tracer
sys.settrace(trace_helper)
try:
# merge with existing run
value = func(*args, **kwargs)
finally:
sys.settrace(trace)
component_run.set_end_timestamp()
# Do logging here
logging.info(f"Inspecting {frame.f_code.co_filename}")
input_pointers = []
output_pointers = []
local_vars = frame.f_locals
# Auto log inputs
if auto_log:
# Get IOPointers corresponding to args and f_locals
all_input_args = {
k: v.default
for k, v in inspect.signature(func).parameters.items()
if v.default is not inspect.Parameter.empty
}
all_input_args = {
**all_input_args,
**dict(zip(inspect.getfullargspec(func).args, args)),
}
all_input_args = {**all_input_args, **kwargs}
input_pointers += store.get_io_pointers_from_args(
**all_input_args)
# Add input_vars and output_vars as pointers
for var in input_vars:
if var not in local_vars:
raise ValueError(
f"Variable {var} not in current stack frame.")
val = local_vars[var]
if val is None:
logging.debug(f"Variable {var} has value {val}.")
continue
if isinstance(val, list):
input_pointers += store.get_io_pointers(val)
else:
input_pointers.append(store.get_io_pointer(str(val)))
for var in output_vars:
if var not in local_vars:
raise ValueError(
f"Variable {var} not in current stack frame.")
val = local_vars[var]
if val is None:
logging.debug(f"Variable {var} has value {val}.")
continue
if isinstance(val, list):
output_pointers += (store.get_io_pointers(
val, pointer_type=PointerTypeEnum.ENDPOINT) if endpoint
else store.get_io_pointers(val))
else:
output_pointers += ([
store.get_io_pointer(
str(val), pointer_type=PointerTypeEnum.ENDPOINT)
] if endpoint else [store.get_io_pointer(str(val))])
# Add input_kwargs and output_kwargs as pointers
for key, val in input_kwargs.items():
if key not in local_vars or val not in local_vars:
raise ValueError(
f"Variables ({key}, {val}) not in current stack frame."
)
if local_vars[key] is None:
logging.debug(
f"Variable {key} has value {local_vars[key]}.")
continue
if isinstance(local_vars[key], list):
if not isinstance(local_vars[val], list) or len(
local_vars[key]) != len(local_vars[val]):
raise ValueError(
f'Value "{val}" does not have the same length as' +
f' the key "{key}."')
input_pointers += store.get_io_pointers(
local_vars[key], values=local_vars[val])
else:
input_pointers.append(
store.get_io_pointer(str(local_vars[key]),
local_vars[val]))
for key, val in output_kwargs.items():
if key not in local_vars or val not in local_vars:
raise ValueError(
f"Variables ({key}, {val}) not in current stack frame."
)
if local_vars[key] is None:
logging.debug(
f"Variable {key} has value {local_vars[key]}.")
continue
if isinstance(local_vars[key], list):
if not isinstance(local_vars[val], list) or len(
local_vars[key]) != len(local_vars[val]):
raise ValueError(
f'Value "{val}" does not have the same length as' +
f' the key "{key}."')
output_pointers += (store.get_io_pointers(
local_vars[key],
local_vars[val],
pointer_type=PointerTypeEnum.ENDPOINT,
) if endpoint else store.get_io_pointers(
local_vars[key], local_vars[val]))
else:
output_pointers += ([
store.get_io_pointer(
str(local_vars[key]),
local_vars[val],
pointer_type=PointerTypeEnum.ENDPOINT,
)
] if endpoint else [
store.get_io_pointer(str(local_vars[key]),
local_vars[val])
])
# Directly specified I/O
if not callable(inputs):
input_pointers += [store.get_io_pointer(inp) for inp in inputs]
input_pointers += [store.get_io_pointer(inp) for inp in inputs]
output_pointers += ([
store.get_io_pointer(out,
pointer_type=PointerTypeEnum.ENDPOINT)
for out in outputs
] if endpoint else [store.get_io_pointer(out) for out in outputs])
# If there were calls to mltrace.load and mltrace.save, log them
if "_mltrace_loaded_artifacts" in local_vars:
input_pointers += [
store.get_io_pointer(name, val) for name, val in
local_vars["_mltrace_loaded_artifacts"].items()
]
if "_mltrace_saved_artifacts" in local_vars:
output_pointers += [
store.get_io_pointer(name, val) for name, val in
local_vars["_mltrace_saved_artifacts"].items()
]
func_source_code = inspect.getsource(func)
if auto_log:
# Get IOPointers corresponding to args and f_locals
all_output_args = {
k: v
for k, v in local_vars.items() if k not in all_input_args
}
output_pointers += store.get_io_pointers_from_args(
**all_output_args)
component_run.add_inputs(input_pointers)
component_run.add_outputs(output_pointers)
# Add code versions
try:
repo = git.Repo(search_parent_directories=True)
component_run.set_git_hash(str(repo.head.object.hexsha))
except Exception as e:
logging.info("No git repo found.")
# Add git tags
if get_git_tags() is not None:
component_run.set_git_tags(get_git_tags())
# Add source code if less than 2^16
if len(func_source_code) < 2**16:
component_run.set_code_snapshot(
bytes(func_source_code, "ascii"))
# Create component if it does not exist
create_component(component_run.component_name, "", "")
store.set_dependencies_from_inputs(component_run)
# Commit component run object to the DB
store.commit_component_run(component_run,
staleness_threshold=staleness_threshold)
return value
def wrapper(*args, **kwargs):
# Construct component run object
store = Store(clientUtils.get_db_uri())
component_run = store.initialize_empty_component_run(self.name)
# Assert key names are not in args or kwargs
if (set(key_names) & set(inspect.getfullargspec(func).args)
) or (set(key_names) & set(kwargs.keys())):
raise ValueError(
"skip_before or skip_after cannot be in " +
f"the arguments of the function {func.__name__}")
# Make Dictionary of test status
status = {}
# Run before tests
if not user_kwargs.get("skip_before"):
all_args = dict(
zip(inspect.getfullargspec(func).args, args))
all_args = {
k if k not in inv_user_kwargs else inv_user_kwargs[k]:
v
for k, v in all_args.items()
}
all_args = {**all_args, **kwargs}
status.update(self.beforeRun(**all_args))
# Create input and output pointers
input_pointers = []
output_pointers = []
# Auto log inputs
if auto_log:
# Get IOPointers corresponding to args and f_locals
all_input_args = {
k: v.default
for k, v in inspect.signature(func).parameters.items()
if v.default is not inspect.Parameter.empty
}
all_input_args = {
**all_input_args,
**dict(zip(inspect.getfullargspec(func).args, args)),
}
all_input_args = {**all_input_args, **kwargs}
input_pointers += store.get_io_pointers_from_args(
should_filter=True, **all_input_args)
def mlflow_start_run_id():
nonlocal mlflow_run_id
res = mlflow_start_run_copy()
if mlflow.active_run():
mlflow_run_id = mlflow.active_run().info.run_id
return res
# monkey patching mlflow.start_run method
mlflow_run_id = None
mlflow_start_run_copy = mlflow.start_run
mlflow.start_run = mlflow_start_run_id
component_run.set_start_timestamp()
# Run function
local_vars, value = utils.run_func_capture_locals(
func, *args, **kwargs)
component_run.set_end_timestamp()
if mlflow_run_id is not None:
try:
mlflow_run = mlflow.get_run(mlflow_run_id)
component_run.set_mlflow_run_id(mlflow_run_id)
metrics = mlflow_run.data.metrics
params = mlflow_run.data.params
component_run.set_mlflow_run_metrics(metrics)
component_run.set_mlflow_run_params(params)
except Exception as e:
logging.warning(
f"Mlflow.get_run {mlflow_run_id} failed.")
mlflow.start_run = mlflow_start_run_copy
if not callable(input_vars):
# Log input and output vars
duplicate = input_vars
if not isinstance(duplicate, dict):
duplicate = {vname: None for vname in input_vars}
for var, label_vars in duplicate.items():
if var not in local_vars:
raise ValueError(
f"Variable {var} not in current stack frame.")
val = local_vars[var]
labels = None
if label_vars is not None:
try:
labels = ([
local_vars[lv] for lv in label_vars
] if isinstance(label_vars, list) else
local_vars[label_vars])
if isinstance(labels, str):
labels = [labels]
except KeyError:
raise ValueError(
f"Variable {label_vars} not " +
f"in current stack frame.")
if val is None:
logging.debug(f"Variable {var} has value {val}.")
continue
input_pointers += store.get_io_pointers_from_args(
should_filter=False, labels=labels, **{var: val})
for var in output_vars:
if var not in local_vars:
raise ValueError(
f"Variable {var} not in current stack frame.")
val = local_vars[var]
if val is None:
logging.debug(f"Variable {var} has value {val}.")
continue
output_pointers += store.get_io_pointers_from_args(
should_filter=False, **{var: val})
# If there were calls to mltrace.load and mltrace.save, log
if "_mltrace_loaded_artifacts" in local_vars:
input_pointers += [
store.get_io_pointer(name, val) for name, val in
local_vars["_mltrace_loaded_artifacts"].items()
]
if "_mltrace_saved_artifacts" in local_vars:
output_pointers += [
store.get_io_pointer(name, val) for name, val in
local_vars["_mltrace_saved_artifacts"].items()
]
func_source_code = inspect.getsource(func)
if auto_log:
# Get IOPointers corresponding to args and f_locals
all_output_args = {
k: v
for k, v in local_vars.items()
if k not in all_input_args
}
output_pointers += store.get_io_pointers_from_args(
should_filter=True, **all_output_args)
# Check that none of the labels in the inputs are deleted
store.assert_not_deleted_labels(
input_pointers, staleness_threshold=staleness_threshold)
# Propagate labels
store.propagate_labels(input_pointers, output_pointers)
component_run.add_inputs(input_pointers)
component_run.add_outputs(output_pointers)
# Add code versions
try:
repo = git.Repo(search_parent_directories=True)
component_run.set_git_hash(str(repo.head.object.hexsha))
except Exception as e:
logging.info("No git repo found.")
# Add git tags
if client.get_git_tags() is not None:
component_run.set_git_tags(client.get_git_tags())
# Add source code if less than 2^16
if len(func_source_code) < 2**16:
component_run.set_code_snapshot(
bytes(func_source_code, "ascii"))
# Create component if it does not exist
client.create_component(self.name, self.description,
self.owner, self.tags)
# Set dependencies
store.set_dependencies_from_inputs(component_run)
# Perform after run tests
if not user_kwargs.get("skip_after"):
after_run_args = {
k if k not in inv_user_kwargs else inv_user_kwargs[k]:
v
for k, v in local_vars.items()
}
status.update(self.afterRun(**after_run_args))
# update the component's testStatus, convert status to a json
component_run.set_test_result(status)
# Commit component run object to the DB
store.commit_component_run(
component_run, staleness_threshold=staleness_threshold)
return value
