def main():
parser = argparse.ArgumentParser()
parser.add_argument("--version",
type=str,
default='',
help="Version to evaluate.")
parser.add_argument("--baselines",
type=int,
default=0,
help="Whether to evaluate the baseline segmentations")
parser.add_argument("--semantic_eval",
type=int,
default=0,
help="Whether to evaluate per region/tissue.")
parser.add_argument('--target', type=str, default='local')
parser.add_argument('--max_jobs', type=int, default=48)
args = parser.parse_args()
version = args.version
if version == '':
version = get_version(ROOT)
baselines = bool(args.baselines)
if baselines:
print("Evaluatiing baselines")
eval_baselines(version, bool(args.semantic_eval), args.target,
args.max_jobs)
else:
print("Evaluating segmentation for version", version)
eval_seg(version, bool(args.semantic_eval))
def get_tags():
tag = get_version('data')
new_tag = tag.split('.')
new_tag[-1] = '0' # reset patch
new_tag[1] = str(int(new_tag[1]) + 1)
new_tag = '.'.join(new_tag)
return tag, new_tag
def main():
parser = argparse.ArgumentParser()
parser.add_argument("--version",
type=str,
default='',
help="Version to evaluate.")
args = parser.parse_args()
version = args.version
if version == '':
version = get_version(ROOT)
eval_seg(version)
roi_begin=roi_begin,
roi_end=roi_end)
print("Have evaluated segmentation:")
print(seg_path, ":", seg_key)
print("against refetence:")
print(ref_path, ":", ref_key)
print("Result:")
print("VI:", vis, "(split)", vim, "(merge)", vis + vim, "(total)")
print("Adapted Rand error:", ari)
if __name__ == '__main__':
parser = argparse.ArgumentParser()
parser.add_argument("seg_path", type=str, help="Path to segmentation")
parser.add_argument("seg_key", type=str, help="Segmentation key")
parser.add_argument("--version",
type=str,
default='',
help="Reference version.")
parser.add_argument('--target', type=str, default='slurm')
parser.add_argument('--max_jobs', type=int, default=200)
parser.add_argument('--with_roi', default=0, type=int)
args = parser.parse_args()
version = args.version
if version == '':
version = get_version(ROOT)
compare_seg_to_ref(args.seg_path, args.seg_key, version,
bool(args.with_roi), args.target, args.max_jobs)