def chrome_extension_redirect():
collection_id = request.args.get("id")
url = request.args.get("url")
collection = None
if collection_id:
collection = Collection.query.filter(
Collection.id == collection_id).first()
else:
collection = Collection()
user = g.user
collection.creator = user
collection.title = request.args.get('title')
collection.append_child(
CollectionItem(parent=collection, content=str(url)))
db.session.add(collection)
db.session.commit()
return redirect(url)
if collection and url and g.user == collection.creator:
collection.append_child(
CollectionItem(parent=collection, content=str(url)))
cache_request(url)
db.session.add(collection)
db.session.commit()
return redirect(url)
else:
#this should be improved
return abort(404)
def add_book(self, user_num, book): for item in self.items: if item.book.id == book.id and item.user_num == user_num: collection_list = CollectionItem.objects.filter(user_num=user_num, book_id__exact=book.id) collection_list.update(dis_collect=False) collection_list.update(add_date = datetime.now()) return collection_item = CollectionItem(user_num=user_num, book=book, dis_collect=False) collection_item.save() self.items.append(collection_item)
def register_menu(subitem_url, subitem_text, parent_path = "/", permmited_group = None):
"""
If subitem_test contains dynamic, subitem_url is not used.
Otherwise, subitem_url is the content of this menu item.
Register a menu item in the left tree in object manager, the info is stored in obj_sys.models.Collection.
:param subitem_url: menu item's URL. When the item is clicked, the URL will be loaded to the content pane
:param subitem_text: menu item's text. It is stored in to id_in_col field for Collection and if it is
"dynamic://xxxx", the parent item's children will be dynamically generated by opening
URL: xxxx. xxxx should return a collection of items as in tags.tag_list. The format is
described in tags.tag_list as well.
:param parent_path: the parent for this menu item. Root item is "/", sub menus should start with "/" as well.
:param permmited_group:
:return: N/A
"""
try:
root_uuid = get_item_id(parent_path)
url = u"view://%s"%(subitem_url)
qs = UfsObj.objects.filter(ufs_url = url)
if 0 == qs.count():
print 'creating new ufs obj'
o = UfsObj(ufs_url = url, uuid = unicode(uuid.uuid4()), timestamp=timezone.now(), user=User.objects.filter(username="******")[0])
o.save()
else:
#print 'use existing item'
o = qs[0]
except django.db.utils.DatabaseError:
#Database is not created yet, just return, items will be created after syncdb is executed
return
#print 'creating collection item for root: ', root_uuid
if permmited_group is None:
#If no permission requested, set anonymous user accessable.
permitted_user_or_group = User.objects.filter(pk=settings.ANONYMOUS_USER_ID)[0]
else:
try:
permitted_user_or_group = Group.objects.filter(name = permmited_group)[0]
except:
#Group not exist, create it
permitted_user_or_group = Group.objects.create(name = permmited_group)
collqs = CollectionItem.objects.filter(uuid = root_uuid, id_in_col = subitem_text)
if 0 == collqs.count():
c = CollectionItem(obj = o, uuid = root_uuid, id_in_col = subitem_text,
timestamp=timezone.now(), user=User.objects.filter(username="******")[0])
c.save()
else:
c = collqs[0]
#Assign group permission
assign_perm('view_collection_item', permitted_user_or_group, c)
def create_item(collection_id):
collection = Collection.query.get(collection_id)
item = CollectionItem(**request.form)
collection.items.append(item)
collection.save()
return redirect(f'/collections/{collection_id}')
def api_create_collection():
data = request.get_json()
print data
if data.get('unique_id'):
collection = Collection.query.filter_by(
unique_id=data.get("unique_id")).first()
collection.title = data.get('title', None)
collection.is_public = data.get('is_public')
collection.timestamp = datetime.utcnow()
layout = data.get('layout')
if layout == 'one':
collection.collection_layout = 'col-sm-6 col-sm-offset-3'
elif layout == 'two':
collection.collection_layout = 'col-sm-6'
elif layout == 'three':
collection.collection_layout = 'col-sm-4'
if g.user == collection.creator:
collection.collection_items.delete()
if data.get('items'):
for item in data.get('items'):
collection.append_child(
CollectionItem(parent=collection, content=str(item)))
cache_request(data.get('items'))
db.session.add(collection)
db.session.commit()
else:
collection = Collection()
user = g.user
if user:
collection.creator = user
collection.title = data.get('title', None)
collection.is_public = data.get('is_public')
layout = data.get('layout')
if layout == 'one':
collection.collection_layout = 'col-sm-6 col-sm-offset-3'
elif layout == 'two':
collection.collection_layout == 'col-sm-6'
elif layout == 'three':
collection.collection_layout = 'col-sm-4'
for item in data["items"]:
collection.append_child(
CollectionItem(parent=collection, content=str(item)))
db.session.add(collection)
db.session.commit()
return jsonify(ok=True,
uri=str(url_for('board', unique_id=collection.unique_id)))
def register(objectClass, group_name = "scheduling"):
module_name = objectClass.__module__.split(".")[0].lower()
class_name = objectClass.__name__.lower()
url = u"view://admin/%s/%s/add"%(module_name, class_name)
try:
for i in UfsObj.objects.filter(ufs_url = url):
return
except django.db.utils.DatabaseError:
#Database is not created yet, just return, items will be created after syncdb is executed
return
o = UfsObj(ufs_url = url, uuid = unicode(uuid.uuid4()), timestamp=timezone.now(), user=User.objects.filter(username="******")[0])
o.save()
c = CollectionItem(obj = o, uuid = gRootUuid, id_in_col="%s_%s_add"%(module_name, class_name),
timestamp=timezone.now(), user=User.objects.filter(username="******")[0])
c.save()
#Add to group
try:
group = Group.objects.filter(name=group_name)[0]
except:
#Group not exist, create it
group = Group.objects.create(name=group_name)
#print 'assigning: ', group, c
assign_perm('view_collection_item', group, c)
def parse_to_ABCDModel(self):
"""Very raw implementation of the parser"""
if self.xml_str is None:
raise TypeError('Expected \'str\' type \'None\' provided!')
e = xml.etree.ElementTree.fromstring(self.xml_str.encode('utf-8'))
content = e.find(c.abcd_path_content.format(self.biocase_ns_str),
self.ns)
record_count = content.attrib['recordCount']
record_dropped = content.attrib['recordDropped']
total_searched_hits = content.attrib['totalSearchHits']
if record_count is None:
raise ValueError('\'recordCount\' can\'t be None.')
if record_dropped is None:
raise ValueError('\'recordDropped\' can\'t be None.')
if total_searched_hits is None:
raise ValueError('\'totalSearchHits\' Count can\'t be None.')
try:
record_count = int(record_count)
record_dropped = int(record_dropped)
total_searched_hits = int(total_searched_hits)
except ValueError:
raise (
'failed to parse attributes to int. provided: '
'{recordCount: {0}, recordDropped: {1}, totalSearchHits: {2}}'.
format(record_count, record_dropped, total_searched_hits))
technical_contact_name = e.find(
c.abcd_path_technical_contact_name.format(self.biocase_ns_str,
self.abcd_ns_str),
self.ns)
technical_contact_name = technical_contact_name.text if technical_contact_name is not None else None
technical_contact_email = e.find(
c.abcd_path_technical_contact_email.format(self.biocase_ns_str,
self.abcd_ns_str),
self.ns)
technical_contact_email = technical_contact_email.text if technical_contact_email is not None else None
organisation_name = e.find(
c.abcd_path_org_representation_name.format(self.biocase_ns_str,
self.abcd_ns_str),
self.ns)
organisation_name = organisation_name.text if organisation_name is not None else None
organisation_abbrv = e.find(
c.abcd_path_org_representation_abbrv.format(
self.biocase_ns_str, self.abcd_ns_str), self.ns)
organisation_abbrv = organisation_abbrv.text if organisation_abbrv is not None else None
organisation_address = e.find(
c.abcd_path_org_address.format(self.biocase_ns_str,
self.abcd_ns_str), self.ns)
organisation_address = organisation_address.text if organisation_address is not None else None
units = e.findall(
c.abcd_path_unit.format(self.biocase_ns_str, self.abcd_ns_str),
self.ns)
if organisation_name is None:
return None
data_provider = DataProvider()
data_provider.org_name = organisation_name
data_provider.org_abbrv = organisation_abbrv
data_provider.address = organisation_address
data_provider.contact_name = technical_contact_name
data_provider.contact_email = technical_contact_email
abcd_model = ABCDModel()
abcd_model.provider = data_provider
abcd_model.record_count = record_count
abcd_model.record_dropped = record_dropped
abcd_model.total_searched_hits = total_searched_hits
for child in units:
unit = {}
collection_item = CollectionItem()
collection_item.ABCD_model = abcd_model
for key, value in c.attrs.iteritems():
name = c.attrs[key]['name']
_relative_path = c.attrs[key][
'relative_path'] # this should be iterated.
_full_path = c.attrs[key][
'full_path'] # this should be iterated.
value = child.find(_relative_path.format(self.abcd_ns_str),
self.ns)
value = value.text if value is not None else None
unit[name] = value
attribute = Attribute()
attribute.id = key # this will be 'k' for key (in the dict)
attribute.name = name
attribute.relative_path = _relative_path
attribute.full_path = _full_path
attribute.values = [value]
collection_item.add_attribute(attribute)
if name == 'SourceInstitutionID' and data_provider.org_abbrv is None:
data_provider.org_abbrv = value
abcd_model.add_collection_item(collection_item)
abcd_model.flag = max([
int(
collection_item.get_attribute(
c.attrs[c.name_unit_id]['name']).values[0])
for collection_item in abcd_model.collection_items
])
return abcd_model
def addArticleToCollection(self, col, article):
colItem = CollectionItem()
colItem.article_id = article.id
colItem.collection_id = col.id
db.session.add(colItem)
db.session.commit()
def addArticleToCollection(self,col,article):
colItem = CollectionItem()
colItem.article_id=article.id
colItem.collection_id = col.id
db.session.add(colItem)
db.session.commit()