def run(cls, args):
tpl_path = locate_template(args.template, new=False)
tpl = open(tpl_path).read()
# TODO: render from a template
output = tpl
if args.out == '-':
sys.stdout.write(tpl)
else:
filename = args.out or locate_template(args.template, new=True)
cls.check_overwrite(args, filename)
with open(filename, 'w') as outfile:
outfile.write(output)
# chmod +x
st = os.stat(filename)
os.chmod(filename, st.st_mode | stat.S_IEXEC)
def render_primer3_input(**kwargs):
tpl_path = locate_template('d.primer3.txt')
tpl = open(tpl_path).read()
tpl = Template(tpl)
return tpl.render(**kwargs)
def render_svg(**kwargs):
# font-size: 12; font: Arial
tpl_path = locate_template('d.arrows.xml')
tpl = open(tpl_path).read()
tpl = Template(tpl)
return tpl.render(**kwargs)
def test_j2(gbdict):
import jinja2
tmpl = jinja2.Template(open(locate_template('d.genbank.tpl')).read())
res = tmpl.render(gbdict=gbdict, wrap=textwrap.wrap)
return res
